|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1588 fasta sequence
[GCTTCGCATCTCGCCTCTGGTGATGAGAGCGGACAGAGCCGAGCTGAGGGAATTAAAACCCCCTTATCCTCTCTCTGCCCCCGGGCTGCCATTGCTGGATCCAACCATCTGCCCCCGCCACGCCTCGTCTCGCGCTAGCCGTCTCGCGTGCGTGCGCGCGCGTCGCGCCGCG-CCCTCGTTTTGGAGCCTTGCGCCCCGCTACTTTCCCCTTGTCCCGAACCCGGAATCCGCCTCGGCGAGCGTCCTTGCTTTGCTTCTTTGGTATCTGTGCTCCCGTTTGCTTTGCCTTGCCACGCTCCTTCCTCCTCCTCATTGTCTCCTCCCGTGGTTCGGCTCATTCTGTTCTTGGGTTGACGCGGGCTGCGTGCGTGCGTGCGTGCGTGCGGAGGCGATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGTGGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTGCGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAAGGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGACAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAACTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCCCGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTTCACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACATCGTCT-CCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATC-AAAGTTGACAGCCACAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGAGGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCTCGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTGGCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCAGAAGTGGACA--TTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGTTTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGTGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTATGTGTTATGTCAGTGTGCGTGTTTGAGCTTCTGTCACTCTGTCAGGGTCCTGTTTCGATCGAACTGCCTGTTTGAGTTCAGAGCAACGCAGCTGCATTTCTTGTAAACACTGGGACTGTATCTGACGCTTCCCTTACAAATTTCCCATTCTGTGTGC]
[+] EMBL AK073093 [GCTTCGCATCTCGCCTCTGGTGATGAGAGCGGACAGAGCCGAGCTGAGGGAATTAAAACCCCCTTATCCTCTCTCTGCCCCCGGGCTGCCATTGCTGGATCCAACCATCTGCCCCCGCCACGCCTCGTCTCGCGCTAGCCGTCTCGCGTGCGTGCGCGCGCGTCGCGCCGCG CCCTCGTTTTGGAGCCTTGCGCCCCGCTACTTTCCCCTTGTCCCGAACCCGGAATCCGCCTCGGCGAGCGTCCTTGCTTTGCTTCTTTGGTATCTGTGCTCCCGTTTGCTTTGCCTTGCCACGCTCCTTCCTCCTCCTCATTGTCTCCTCCCGTGGTTCGGCTCATTCTGTTCTTGGGTTGACGCGGGCTGCGTGCGTGCGTGCGTGCGTGCGGAGGCGATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGTGGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTGCGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAAGGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGACAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAACTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCCCGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTTCACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACATCGTCT CCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATC AAAGTTGACAGCCACAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGAGGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCTCGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTGGCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCAGAAGTGGACA TTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGTTTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGTGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTATGTGTTATGTCAGTGTGCGTGTTTGAGCTTCTGTCACTCTGTCAGGGTCCTGTTTCGATCGAACTGCCTGTTTGAGTTCAGAGCAACGCAGCTGCATTTCTTGTAAACACTGGGACTGTATCTGACGCTTCCCTTACAAATTTCCCATTCTGTGTGC]
[+] EMBL CA756162 [ CCCCGCCACGCCTCGTCTCGCGCTAGCCGTCTCGCGTGCGTGCGCGCGCGTCGCGCCGCG CCCTCGTTTTGGAGCCTTGCGCCCCGCTACTTTCCCCTTGTCCCGAACCCGGAATCCGCCTCGGCGAGCGTCCTTGCTTTGCTTCTTTGGTATCTGTGCTCCCGTTTGCTTTGCCTTGCCACGCTCCTTCCTCCTCCTCATTGTCTCCTCCCGTGGTTCGGCTCATTCTGTTCTTGGGTTGACGCGGGCTGCGTGCGTGCGTGCGTGCGTGCGGAGGCGATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGTGGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTGCGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAAGGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGACAAGGACGACCAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCG ]
[+] EMBL C91780 [ CTCGCGCTA NCGTCTCGCGTGCGTGCGCGCGCGTCG G CGCGNCNCTCGTTTTGGAGCCTTGCGCCCCGCTACTTTCCCCTTGTCCCGAACCCGGAATCCGCCTCGGCGAGCGTCCTTGCTTTGCTTCTTTGGTATCTGTGCTCCCGTTTGCTTTGCCTTGCCACGCTCCTTCCTCCTCCTCATTGTCTCCTCCCGTGGTTCGGCTCATTCTGTTCTTGGGTTGACGCGGGCTGCGTGCGTGCGTGCGTGCGTGCGGAGGCGATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGA GCGACGAAGGANCGGGTGGCGGTGGTGGG AAGAACG ]
[+] EMBL AU101439 [ GTTCACTTTTTCCGTCAGCAAAAACATNGTCTCCCGGCTTCCGNTACACAAATGCCGTCTGGAAGACCGGCATCAAAAGTTGACAGCCACAAGGAGATGCTCGGNACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGAGGAGACCACGCCGTCCGGCATNTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCTCGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGANTGGCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCAGAAGTGGACATTTTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGTTTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGTGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTATGTGTTATGTCAGTGTGCGTGTTTGAGCTTCTGTCACTCTGTCAGGGTCCTGTTTCGATCGAACTGCCTGTTTGAGTTCAGAGCAACGCAGCTGCATTTCTTGTAAAaaaa ]
consensusID : consensus_8541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1060 fasta sequence
[ATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGTGGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTGCGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAAGGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGACAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAACTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCCCGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTTCACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACATCGTCTCCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATCAAAGTTGACAGCCACAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGAGGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCTCGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTGGCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCAGAAGTGGACATTTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGTTTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGCGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AY288198 [ATGTCGTCGGCGGTGGATGCCATCTCCTGTTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGTGGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTGCGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAAGGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGACAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAACTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCCCGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTTCACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACATCGTCTCCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATCAAAGTTGACAGCCACAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGAGGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCTCGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTGGCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAGGGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCAGAAGTGGACATTTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGTTTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGTGTTAACGCCGCGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8541#0 GCTTCGCATCTCGCCTCTGGTGATGAGAGCGGACAGAGCCGAGCTGAGGGAATTAAAACC 60
consensus_8541#1 ------------------------------------------------------------
consensus_8541#0 CCCTTATCCTCTCTCTGCCCCCGGGCTGCCATTGCTGGATCCAACCATCTGCCCCCGCCA 120
consensus_8541#1 ------------------------------------------------------------
consensus_8541#0 CGCCTCGTCTCGCGCTAGCCGTCTCGCGTGCGTGCGCGCGCGTCGCGCCGCGCCCTCGTT 180
consensus_8541#1 ------------------------------------------------------------
consensus_8541#0 TTGGAGCCTTGCGCCCCGCTACTTTCCCCTTGTCCCGAACCCGGAATCCGCCTCGGCGAG 240
consensus_8541#1 ------------------------------------------------------------
consensus_8541#0 CGTCCTTGCTTTGCTTCTTTGGTATCTGTGCTCCCGTTTGCTTTGCCTTGCCACGCTCCT 300
consensus_8541#1 ------------------------------------------------------------
consensus_8541#0 TCCTCCTCCTCATTGTCTCCTCCCGTGGTTCGGCTCATTCTGTTCTTGGGTTGACGCGGG 360
consensus_8541#1 ------------------------------------------------------------
consensus_8541#0 CTGCGTGCGTGCGTGCGTGCGTGCGGAGGCGATGTCGTCGGCGGTGGATGCCATCTCCTG 420
consensus_8541#1 -------------------------------ATGTCGTCGGCGGTGGATGCCATCTCCTG 29
*****************************
consensus_8541#0 TTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGT 480
consensus_8541#1 TTCCAAGGGCATCGCGGCCCCGCCGACGGAGGAGGCGACGAAGGAGCGGGTGGCGGTGGT 89
************************************************************
consensus_8541#0 GGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTG 540
consensus_8541#1 GGGCAAGAACGGCGGCGTGGAGCACGGCGGCGACGCCGCGACGATGAACGGGAAGCAGTG 149
************************************************************
consensus_8541#0 CGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAA 600
consensus_8541#1 CGGCGAGGCGCCGCATTGCCGCAAGGAGAGCAACGAGGAGGAGGAGGATGACGAGGAGAA 209
************************************************************
consensus_8541#0 GGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGA 660
consensus_8541#1 GGCCCCCAAGGCCATCGACCTCGGCCCGCGTGTCAGCATCAAGGACCAGCTCGAGAAAGA 269
************************************************************
consensus_8541#0 CAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAA 720
consensus_8541#1 CAAGGACGACGAGAGCCTGAGGCGGTGGAAGGAGCAGCTGCTCGGCAGCGTGGATTTGAA 329
************************************************************
consensus_8541#0 CTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCC 780
consensus_8541#1 CTCCGTAGGAGAGACGTTGGAGCCTGACGTGAAGATCATGAGCCTGGCCATCCTCTCGCC 389
************************************************************
consensus_8541#0 CGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTT 840
consensus_8541#1 CGGCCGGCCGGACATCTTCCTGCCGCTGCCGGTGGAGCCCAACGCCAAGGGCGTCTGGTT 449
************************************************************
consensus_8541#0 CACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACAT 900
consensus_8541#1 CACCCTCAAGGAGGGCTCCCTCTACAAGCTCAAGTTCACCTTCTCCGTCAGCAACAACAT 509
************************************************************
consensus_8541#0 CGTCTCCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATCAAAGTTGACAGCCA 960
consensus_8541#1 CGTCTCCGGCCTCCGCTACACCAATGCCGTCTGGAAGACCGGCATCAAAGTTGACAGCCA 569
************************************************************
consensus_8541#0 CAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGA 1020
consensus_8541#1 CAAGGAGATGCTCGGCACGTTCAGCCCCCAGCCGGAGCCGTACACGTACGTGACGCCGGA 629
************************************************************
consensus_8541#0 GGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCT 1080
consensus_8541#1 GGAGACCACGCCGTCCGGCATGTTTGCGAGGGGATCCTACTCGGCCAGGACGAAGTTCCT 689
************************************************************
consensus_8541#0 CGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTG 1140
consensus_8541#1 CGACGACGACCGGAAATGTTACCTGGAGATCAACTACACCTTCGACATACGCCGAGAGTG 749
************************************************************
consensus_8541#0 GCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAG 1200
consensus_8541#1 GCCGGCGTTGAGCTAATGATCAGCTGAGCCGTTTTTCCGGTGGTGGTCGCCGAGTAGAAG 809
************************************************************
consensus_8541#0 GGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCA 1260
consensus_8541#1 GGTGAGGCGCCGGCCGGCCGGCATTCATGCTGTGTGTTACTGTCGTCACCGTTGGGAGCA 869
************************************************************
consensus_8541#0 GAAGTGGACATTTTTTTTT-CGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGT 1319
consensus_8541#1 GAAGTGGACATTTTTTTTTTCGTCTCGTTTGCGTCTTATCCACTCATTTTTTTTTTTGGT 929
******************* ****************************************
consensus_8541#0 TTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGT 1379
consensus_8541#1 TTGATTCACCCTAGGGTTCTTTTGTATATTGTTGCCCTGTCTGTCCCGGTTGTTTGCTGT 989
************************************************************
consensus_8541#0 GTTAACGCCGTGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTATGTGTTAT 1439
consensus_8541#1 GTTAACGCCGCGTTAGACGTACGCTTTGTCAGTTCAAGTTGATGTTATGCTAAAAAAAAA 1049
********** ***************************************** *
consensus_8541#0 GTCAGTGTGCGTGTTTGAGCTTCTGTCACTCTGTCAGGGTCCTGTTTCGATCGAACTGCC 1499
consensus_8541#1 AAAAAAAAAAA------------------------------------------------- 1060
*
consensus_8541#0 TGTTTGAGTTCAGAGCAACGCAGCTGCATTTCTTGTAAACACTGGGACTGTATCTGACGC 1559
consensus_8541#1 ------------------------------------------------------------
consensus_8541#0 TTCCCTTACAAATTTCCCATTCTGTGTGC 1588
consensus_8541#1 -----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||