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Oryza sativa
cluster # 8545 cluster # 8545       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8545#0 length = 917 sequences # 4  
consensus_8545#1 length = 610 sequences # 1  

consensusID : consensus_8545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 917
fasta sequence
                              [GTTTTTTTTTTTTTTTTTTTTTTTTGGAGTCTGATGGCAGCTATTATTACTACCATCCT-GTGGCCAACACAACACTCCAACAGGAACTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACTCATTTTGCCTGTTGGCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACC-CATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAGTTCATCG-TAAGCCGGTGATCAGGATTTGCCGGCGATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACAGCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAAGAGTTCAGGTTTCTTCTTTTCTACTC]

[+] EMBL CF322131             [GTTTTTTTTTTTTTTTTTTTTTTTTGGAGTCTGATGGCAGCTATTATTACTACCATCCT GTGGCCAACACAACACTCCAACAGGAACTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACTCATTTTGCCTGTTGGCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAAGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB964452             [                        TGGAGTCTGATGGCAGTAATTATTACTACCATCCTNGTGGCCAACACAACACTCCAACAGGAACTGTACAAAAACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTGTCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACC CATTTGGCCCATGAAGGCATGCTGGGTATCGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAG TCATCG TAAGCCGGTGATCAAGA TTG CGGCat                                                                                                                                       ]
[-] EMBL CF322130             [                                                                                                                                                                                                                                                                                                                   TTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACC CATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAGTTCATAA AAAGCCGGTGATCAGGATTTGCCGGCGATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACAGCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAAGAGTTCAGGTTTCTTCTTTTCTACTC]
[-] EMBL CF277332             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACCNCATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAGTTCATCGTTAAGCCGGTGATCAGGATTTGCCGGCGATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACAGCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAA                          ]


>consensus_8545#0 GTTTTTTTTTTTTTTTTTTTTTTTTGGAGTCTGATGGCAGCTATTATTACTACCATCCTG TGGCCAACACAACACTCCAACAGGAACTGTACAAACACACGCCTGCGCTGCAAGCGTCTA TTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACTCATTTTGCCTGTTG GCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAA ATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGC TCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATC TCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCT ACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCC AGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACC TCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCA ACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTT CCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACC GGCAAAGCACTATTGATGCCCGAGGAGTTCATCGTAAGCCGGTGATCAGGATTTGCCGGC GATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACA GCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAAGAGTTCAGG TTTCTTCTTTTCTACTC



consensusID : consensus_8545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence
                              [CTGTCAACGATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTGTCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCT]

[+] EMBL CF277333             [CTGTCAACGATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTGTCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCT]


>consensus_8545#1 CTGTCAACGATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTGTACAA ACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATG GCATCAAACACGCATTTTGCCTGTTGTCGTGGTGCTACCAAACTAAAAAACTGAGTTGTA ACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCC TGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCA CTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCT CGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGAT TTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCA CCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTC TTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACCCATTTGGCCCATG AAGGCATGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8545#0      GTTTTTTTTTTTTTTTTTTTTTTTTGGAGTCTGATGGCAGCTATTATTACTACCATCCTG 60
consensus_8545#1      ---------------------------------CTGTCAACGATACGCTACGTAACGGCA 27
                                                        ** ** * **          *     

consensus_8545#0      TGGCCAACACAACACTCCAACAGGAACTGTACAAACACACGCCTGCGCTGCAAGCGTCTA 120
consensus_8545#1      TGACTT-TGTTTTTTTTTTTTTTTTTTTGTACAAACACACGCCTGCGCTGCAAGCGTCTA 86
                      ** *           *           *********************************

consensus_8545#0      TTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACTCATTTTGCCTGTTG 180
consensus_8545#1      TTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTG 146
                      ********************************************* **************

consensus_8545#0      GCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAA 240
consensus_8545#1      TCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAA 206
                       ***********************************************************

consensus_8545#0      ATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGC 300
consensus_8545#1      ATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGC 266
                      ************************************************************

consensus_8545#0      TCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATC 360
consensus_8545#1      TCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATC 326
                      ************************************************************

consensus_8545#0      TCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCT 420
consensus_8545#1      TCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCT 386
                      ************************************************************

consensus_8545#0      ACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCC 480
consensus_8545#1      ACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCC 446
                      ************************************************************

consensus_8545#0      AGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACC 540
consensus_8545#1      AGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACC 506
                      ************************************************************

consensus_8545#0      TCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCA 600
consensus_8545#1      TCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCA 566
                      ************************************************************

consensus_8545#0      ACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTT 660
consensus_8545#1      ACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCT---------------- 610
                      ********************************************                

consensus_8545#0      CCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACC 720
consensus_8545#1      ------------------------------------------------------------
                                                                                  

consensus_8545#0      GGCAAAGCACTATTGATGCCCGAGGAGTTCATCGTAAGCCGGTGATCAGGATTTGCCGGC 780
consensus_8545#1      ------------------------------------------------------------
                                                                                  

consensus_8545#0      GATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACA 840
consensus_8545#1      ------------------------------------------------------------
                                                                                  

consensus_8545#0      GCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAAGAGTTCAGG 900
consensus_8545#1      ------------------------------------------------------------
                                                                                  

consensus_8545#0      TTTCTTCTTTTCTACTC 917
consensus_8545#1      -----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)