These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 917 fasta sequence [GTTTTTTTTTTTTTTTTTTTTTTTTGGAGTCTGATGGCAGCTATTATTACTACCATCCT-GTGGCCAACACAACACTCCAACAGGAACTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACTCATTTTGCCTGTTGGCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACC-CATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAGTTCATCG-TAAGCCGGTGATCAGGATTTGCCGGCGATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACAGCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAAGAGTTCAGGTTTCTTCTTTTCTACTC] [+] EMBL CF322131 [GTTTTTTTTTTTTTTTTTTTTTTTTGGAGTCTGATGGCAGCTATTATTACTACCATCCT GTGGCCAACACAACACTCCAACAGGAACTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACTCATTTTGCCTGTTGGCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAAGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCC ] [+] EMBL CB964452 [ TGGAGTCTGATGGCAGTAATTATTACTACCATCCTNGTGGCCAACACAACACTCCAACAGGAACTGTACAAAAACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTGTCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACC CATTTGGCCCATGAAGGCATGCTGGGTATCGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAG TCATCG TAAGCCGGTGATCAAGA TTG CGGCat ] [-] EMBL CF322130 [ TTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACC CATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAGTTCATAA AAAGCCGGTGATCAGGATTTGCCGGCGATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACAGCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAAGAGTTCAGGTTTCTTCTTTTCTACTC] [-] EMBL CF277332 [ CGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACCNCATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAGTTCATCGTTAAGCCGGTGATCAGGATTTGCCGGCGATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACAGCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAA ] consensusID : consensus_8545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CTGTCAACGATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTGTCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCT] [+] EMBL CF277333 [CTGTCAACGATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTGTCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8545#0 GTTTTTTTTTTTTTTTTTTTTTTTTGGAGTCTGATGGCAGCTATTATTACTACCATCCTG 60 consensus_8545#1 ---------------------------------CTGTCAACGATACGCTACGTAACGGCA 27 ** ** * ** * consensus_8545#0 TGGCCAACACAACACTCCAACAGGAACTGTACAAACACACGCCTGCGCTGCAAGCGTCTA 120 consensus_8545#1 TGACTT-TGTTTTTTTTTTTTTTTTTTTGTACAAACACACGCCTGCGCTGCAAGCGTCTA 86 ** * * ********************************* consensus_8545#0 TTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACTCATTTTGCCTGTTG 180 consensus_8545#1 TTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTG 146 ********************************************* ************** consensus_8545#0 GCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAA 240 consensus_8545#1 TCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAA 206 *********************************************************** consensus_8545#0 ATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGC 300 consensus_8545#1 ATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGC 266 ************************************************************ consensus_8545#0 TCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATC 360 consensus_8545#1 TCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATC 326 ************************************************************ consensus_8545#0 TCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCT 420 consensus_8545#1 TCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCT 386 ************************************************************ consensus_8545#0 ACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCC 480 consensus_8545#1 ACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCC 446 ************************************************************ consensus_8545#0 AGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACC 540 consensus_8545#1 AGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACC 506 ************************************************************ consensus_8545#0 TCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCA 600 consensus_8545#1 TCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCA 566 ************************************************************ consensus_8545#0 ACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTT 660 consensus_8545#1 ACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCT---------------- 610 ******************************************** consensus_8545#0 CCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACC 720 consensus_8545#1 ------------------------------------------------------------ consensus_8545#0 GGCAAAGCACTATTGATGCCCGAGGAGTTCATCGTAAGCCGGTGATCAGGATTTGCCGGC 780 consensus_8545#1 ------------------------------------------------------------ consensus_8545#0 GATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACA 840 consensus_8545#1 ------------------------------------------------------------ consensus_8545#0 GCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAAGAGTTCAGG 900 consensus_8545#1 ------------------------------------------------------------ consensus_8545#0 TTTCTTCTTTTCTACTC 917 consensus_8545#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||