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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 917 fasta sequence
[GTTTTTTTTTTTTTTTTTTTTTTTTGGAGTCTGATGGCAGCTATTATTACTACCATCCT-GTGGCCAACACAACACTCCAACAGGAACTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACTCATTTTGCCTGTTGGCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACC-CATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAGTTCATCG-TAAGCCGGTGATCAGGATTTGCCGGCGATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACAGCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAAGAGTTCAGGTTTCTTCTTTTCTACTC]
[+] EMBL CF322131 [GTTTTTTTTTTTTTTTTTTTTTTTTGGAGTCTGATGGCAGCTATTATTACTACCATCCT GTGGCCAACACAACACTCCAACAGGAACTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACTCATTTTGCCTGTTGGCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAAGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCC ]
[+] EMBL CB964452 [ TGGAGTCTGATGGCAGTAATTATTACTACCATCCTNGTGGCCAACACAACACTCCAACAGGAACTGTACAAAAACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTGTCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACC CATTTGGCCCATGAAGGCATGCTGGGTATCGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAG TCATCG TAAGCCGGTGATCAAGA TTG CGGCat ]
[-] EMBL CF322130 [ TTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACC CATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAGTTCATAA AAAGCCGGTGATCAGGATTTGCCGGCGATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACAGCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAAGAGTTCAGGTTTCTTCTTTTCTACTC]
[-] EMBL CF277332 [ CGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACCNCATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTTCCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACCGGCAAAGCACTATTGATGCCCGAGGAGTTCATCGTTAAGCCGGTGATCAGGATTTGCCGGCGATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACAGCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAA ]
consensusID : consensus_8545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[CTGTCAACGATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTGTCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCT]
[+] EMBL CF277333 [CTGTCAACGATACGCTACGTAACGGCATGACTTTGTTTTTTTTTTTTTTTTTTTGTACAAACACACGCCTGCGCTGCAAGCGTCTATTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTGTCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAAATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGCTCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATCTCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCTACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCCAGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACCTCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCAACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8545#0 GTTTTTTTTTTTTTTTTTTTTTTTTGGAGTCTGATGGCAGCTATTATTACTACCATCCTG 60
consensus_8545#1 ---------------------------------CTGTCAACGATACGCTACGTAACGGCA 27
** ** * ** *
consensus_8545#0 TGGCCAACACAACACTCCAACAGGAACTGTACAAACACACGCCTGCGCTGCAAGCGTCTA 120
consensus_8545#1 TGACTT-TGTTTTTTTTTTTTTTTTTTTGTACAAACACACGCCTGCGCTGCAAGCGTCTA 86
** * * *********************************
consensus_8545#0 TTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACTCATTTTGCCTGTTG 180
consensus_8545#1 TTATATCAATCATCAATCAATCGGGAAGGCAATGGCATCAAACACGCATTTTGCCTGTTG 146
********************************************* **************
consensus_8545#0 GCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAA 240
consensus_8545#1 TCGTGGTGCTACCAAACTAAAAAACTGAGTTGTAACAGTAGCAGTTTTCTTTGCTACTAA 206
***********************************************************
consensus_8545#0 ATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGC 300
consensus_8545#1 ATGTGTATTTAGTTTCTGTTTGCTTTCCCCCTCCTGCCAAAAGGGTCCTTCCCCTACAGC 266
************************************************************
consensus_8545#0 TCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATC 360
consensus_8545#1 TCTTCCTTGTCTATCTTGTCGATGATGGGATCCACTATTGCATCCAACTCTTTCTTTATC 326
************************************************************
consensus_8545#0 TCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCT 420
consensus_8545#1 TCATCAACCTTCTGGATTAGGGCCTCGGCTTTCTCGGCATCATCCTCTATCACATCGGCT 386
************************************************************
consensus_8545#0 ACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCC 480
consensus_8545#1 ACGGTCTTAATCTTGGAGGCAACCTCCTTGAGATTTTCGTTGCCGGGAAAAGCGTCGGCC 446
************************************************************
consensus_8545#0 AGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACC 540
consensus_8545#1 AGCTCGCCGGCGACCTTCTCAGTCGCCTCCGCCACCGTGTCGACCACCTCGATTGCTACC 506
************************************************************
consensus_8545#0 TCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCA 600
consensus_8545#1 TCCGCTGTCTTCTCCACGGTGTCTTCCAATGCTCTTATCTTTCTGTAGATGGGTATAGCA 566
************************************************************
consensus_8545#0 ACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCTGGGTACTGGGAGATTT 660
consensus_8545#1 ACAATGATGGCCCCAACTACCCATTTGGCCCATGAAGGCATGCT---------------- 610
********************************************
consensus_8545#0 CCTCCTGACGGTGCTGGAGGACCAGAACCAACTGCAGGGATTTGTGCAGCTCCTCTGACC 720
consensus_8545#1 ------------------------------------------------------------
consensus_8545#0 GGCAAAGCACTATTGATGCCCGAGGAGTTCATCGTAAGCCGGTGATCAGGATTTGCCGGC 780
consensus_8545#1 ------------------------------------------------------------
consensus_8545#0 GATGAGCCGATGCAGATAACGGCGTGTTCCGGTGACGCTGAGCAATCGCTGGAGCGCACA 840
consensus_8545#1 ------------------------------------------------------------
consensus_8545#0 GCGCCAAGCCTTTGCAAGCAACAAGAGATTTGAGCACCGCCATGGATTTAAGAGTTCAGG 900
consensus_8545#1 ------------------------------------------------------------
consensus_8545#0 TTTCTTCTTTTCTACTC 917
consensus_8545#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||