cluster # 8547

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Oryza sativa
cluster # 8547 cluster # 8547 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8547#0 length = 1388 sequences # 3

consensus_8547#1 length = 432 sequences # 1
consensus_8547#2 length = 134 sequences # 1

consensusID : consensus_8547#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1388
fasta sequence

                              [GCCGCCGCCGTCATACTCATATCATATCTTCTTCTTCTTCTCCAAAAAAATACTAGTGTAATGTGTGATTTGTGAGAGATGATGGAGCTGTGTAGGATTCGAACCTTCCAGAAGAGCCTACTGAGGCCCCTCCTCCTCCTCCAGCATGCCCCTTGTAGAACCCTCCAAACCCTAGGGCGGTCCCCTTCGCCCTCGGTGTTCCGGCCCCCCCCGCCGCCGCCCCCCGCTCCTCCTCCTCCTCCTCCGCTCCTCCTTCGCCTCCGTCTCTCCGGGTCCGGCCCCCGGGAGCGGGACAGGCGAATGCCCCCCGCCCCCGCCCGCGCCCTTGCCGCCCGACGAGCTCGCCTCCGACGACGACGCCTACTACCACGAGCACATTCTCGAGGCCACGCAGGAGGACCAAAGTCGCCTCGTTCCAGTCAAGGCCTACTTCCCCTGCACCAGCATCAACCTCAAGAGCCTCCAGTCCCAGAATTCCTTCAATGTCATCCCCCCCACTTCGCGTGCTACCAACTACGTCGTCCTCAGGTACTACGATGTCAAGGGAGACCCAGAGGGTTTTAAGGCTGGCATCATAGATGAAAGTCATTGCCACTATATGGTGGTGTTCCAATATGGGTCCATTGTGCTGTTTAATGTTTCTGATCATGAAGCGGATGGATACCTGAAAATTGTTGAGAAGCATGCATCAGGCTTACTTCCAGAGATGAGAAAAGATGATTATGCTGTTGTTGAGAAGCCTACCTTGGAGGCATGGATGCAGGGTGGACTTGACTTCATCATACTCAGGGACCTAAGTATCGATGGGATTCGTACAATTGGAAGTGTCCTTGGTCAGAGTATTGCCCTTGACTATTATATCCGGCAAGTAGATGGAATGGTAGCTGAGTTCACGGATATAAATCGTGGAATGGAAAAGACTGGTACCTTCACTATGGAAAGGAAAAAGCTTTTCCAGTTGGTAGGAAAGGCTAACTCTAACCTGGCAGATGTTATTCTCAAGCTTGGGCTTTTTGAAAGGTCAGACATTGCTTGGAAGAACGCAAACTATGCTCAGATTTGGGAATACCTTCGAGATGAATATGAGTTAACCCAAAGATTTTGGAACCTTGATTTTAAGTTGAAATTTGTTGAGCACAACATTCGTTTTCTTCAAGAGATCCTTCAGAACAGGAAGTCTGATTTTCTGGAATGGCTTATCATAATTTTGATTAGTGTGGAGATCCTGATATCTGTTTACAACATTGTTCAGGAGCAAATGTAGCTGACTATTGTGGGAATCCTTGCTGGGGCTGAAACCTCGTCAGAACCACTGTGGCACGAACCACGAATGACACGTTCTGTCTTGTGGATTTTTCAATGGATCAAGTAAGAGCCTTGTATATGCG]

[+] EMBL AK065595             [GCCGCCGCCGTCATACTCATATCATATCTTCTTCTTCTTCTCCAAAAAAATACTAGTGTAATGTGTGATTTGTGAGAGATGATGGAGCTGTGTAGGATTCGAACCTTCCAGAAGAGCCTACTGAGGCCCCTCCTCCTCCTCCAGCATGCCCCTTGTAGAACCCTCCAAACCCTAGGGCGGTCCCCTTCGCCCTCGGTGTTCCGGCCCCCCCCGCCGCCGCCCCCCGCTCCTCCTCCTCCTCCTCCGCTCCTCCTTCGCCTCCGTCTCTCCGGGTCCGGCCCCCGGGAGCGGGACAGGCGAATGCCCCCCGCCCCCGCCCGCGCCCTTGCCGCCCGACGAGCTCGCCTCCGACGACGACGCCTACTACCACGAGCACATTCTCGAGGCCACGCAGGAGGACCAAAGTCGCCTCGTTCCAGTCAAGGCCTACTTCCCCTGCACCAGCATCAACCTCAAGAGCCTCCAGTCCCAGAATTCCTTCAATGTCATCCCCCCCACTTCGCGTGCTACCAACTACGTCGTCCTCAGGTACTACGATGTCAAGGGAGACCCAGAGGGTTTTAAGGCTGGCATCATAGATGAAAGTCATTGCCACTATATGGTGGTGTTCCAATATGGGTCCATTGTGCTGTTTAATGTTTCTGATCATGAAGCGGATGGATACCTGAAAATTGTTGAGAAGCATGCATCAGGCTTACTTCCAGAGATGAGAAAAGATGATTATGCTGTTGTTGAGAAGCCTACCTTGGAGGCATGGATGCAGGGTGGACTTGACTTCATCATACTCAGGGACCTAAGTATCGATGGGATTCGTACAATTGGAAGTGTCCTTGGTCAGAGTATTGCCCTTGACTATTATATCCGGCAAGTAGATGGAATGGTAGCTGAGTTCACGGATATAAATCGTGGAATGGAAAAGACTGGTACCTTCACTATGGAAAGGAAAAAGCTTTTCCAGTTGGTAGGAAAGGCTAACTCTAACCTGGCAGATGTTATTCTCAAGCTTGGGCTTTTTGAAAGGTCAGACATTGCTTGGAAGAACGCAAACTATGCTCAGATTTGGGAATACCTTCGAGATGAATATGAGTTAACCCAAAGATTTTGGAACCTTGATTTTAAGTTGAAATTTGTTGAGCACAACATTCGTTTTCTTCAAGAGATCCTTCAGAACAGGAAGTCTGATTTTCTGGAATGGCTTATCATAATTTTGATTAGTGTGGAGATCCTGATATCTGTTTACAACATTGTTCAGGAGCAAATGTAGCTGACTATTGTGGGAATCCTTGCTGGGGCTGAAACCTCGTCAGAACCACTGTGGCACGAACCACGAATGACACGTTCTGTCTTGTGGATTTTTCAATGGATCAAGTAAGAGCCT          ]
[+] EMBL CB685363             [                                                                                               GATTCTAACCTTCCAGAAGAGCCTACTGAGGCCCCTCCTCCTCCTCCAGCATGCCCCTTGTAGAACCCTCCAAACCCTAGGGCGGTCCCCTTCGCCCTCGGTGTTCCGG CCCCCCCGCCGCCGCCCCCCGCTCCTCCTCCTCCTCCTCCGCTCCTCCTTCGCCTCCGTCTCTCCGGGTCCGGCCCCCGGGAGCGGGACAGGCGAATGCCCCCCGCCCCCGCCCGCGCCCTTGCCGCCCGACGAGCTCGCCTCCGACGACCACGCCTACTACCACGAGCACATTCTCCAGGCCACGCATGAGGACCAAAGTCGCCTCGTTCCAGTCAAGGCCTACTTCCCCTGCACCAGCATCAACCTCAAGAGCCTCCAGTCCCAGAATTCCTTCAATGTCATCCCCCCCACTTCGCGTGCTACCAACTACGTCGTCCTCAGGTACTACGATGTCAAGGGAGACCCACAGGGTTTTAAGGCTGGCATCATAGATGAAAGTCATTGCCACTATATGGTGGTGTTCCAATATGGGTCCATTGCGCTGTTTAATGCTTCTGATCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB685364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCAGGCTTACTTCCAGAGATGAGAAAAGATGATTATGCTGTTGTTGAGAAGCCTACCTTGGAGACATGGATGCAGGGTGGACTTGACTTCATCATACTCAGGGACCTAAGTATCGATGGGATTCGTACAATTGGAAGTGTCCTTGGTCAGAGTATTGCCCTTGACTATTATATCCGGCAAGTAGATGGAATGGTAGCTGAGTTCACGGATATAAATCGTGGAATGGAAAAGACTGGTACCTTCACTATGGAAAGGAAAAAGCTTTTCCAGTTGGTAGGAAAGGCTAACTCTAACCTGGCAGATGTTATTCTCAAGCTTGGGCTTTTTGAAAGGTCAGACATTGCTTGGAAGAACGCAAACTATGCTCAGATTTGGGAATACCTTCGAGATGAATATGAGTTAACCCAAAGATTTGGGAACCTTGATTTTAAGTTGAAATTTGTTGAGCACAACATTCGTTTTCTTCAAGAGATCCTTCAGAACAGGAAGTCTGATTTTCTGGAATGGCTTATCATAATTTTGATTAGTGTGGAGATCCTGATATCTGTTTACAACATTGTTCAGGAGCAAATGTAGCTGACTATTGTGGGAATCCTTGCTGGGGCTGAAACCTCGTCAGAACCACTGTGGCACGAACCACGAATGACACGTTCTGTCTTGTGGATGTTTCAATGGATCAAGTAAGACCCTTGTATATGCG]




>consensus_8547#0
GCCGCCGCCGTCATACTCATATCATATCTTCTTCTTCTTCTCCAAAAAAATACTAGTGTA
ATGTGTGATTTGTGAGAGATGATGGAGCTGTGTAGGATTCGAACCTTCCAGAAGAGCCTA
CTGAGGCCCCTCCTCCTCCTCCAGCATGCCCCTTGTAGAACCCTCCAAACCCTAGGGCGG
TCCCCTTCGCCCTCGGTGTTCCGGCCCCCCCCGCCGCCGCCCCCCGCTCCTCCTCCTCCT
CCTCCGCTCCTCCTTCGCCTCCGTCTCTCCGGGTCCGGCCCCCGGGAGCGGGACAGGCGA
ATGCCCCCCGCCCCCGCCCGCGCCCTTGCCGCCCGACGAGCTCGCCTCCGACGACGACGC
CTACTACCACGAGCACATTCTCGAGGCCACGCAGGAGGACCAAAGTCGCCTCGTTCCAGT
CAAGGCCTACTTCCCCTGCACCAGCATCAACCTCAAGAGCCTCCAGTCCCAGAATTCCTT
CAATGTCATCCCCCCCACTTCGCGTGCTACCAACTACGTCGTCCTCAGGTACTACGATGT
CAAGGGAGACCCAGAGGGTTTTAAGGCTGGCATCATAGATGAAAGTCATTGCCACTATAT
GGTGGTGTTCCAATATGGGTCCATTGTGCTGTTTAATGTTTCTGATCATGAAGCGGATGG
ATACCTGAAAATTGTTGAGAAGCATGCATCAGGCTTACTTCCAGAGATGAGAAAAGATGA
TTATGCTGTTGTTGAGAAGCCTACCTTGGAGGCATGGATGCAGGGTGGACTTGACTTCAT
CATACTCAGGGACCTAAGTATCGATGGGATTCGTACAATTGGAAGTGTCCTTGGTCAGAG
TATTGCCCTTGACTATTATATCCGGCAAGTAGATGGAATGGTAGCTGAGTTCACGGATAT
AAATCGTGGAATGGAAAAGACTGGTACCTTCACTATGGAAAGGAAAAAGCTTTTCCAGTT
GGTAGGAAAGGCTAACTCTAACCTGGCAGATGTTATTCTCAAGCTTGGGCTTTTTGAAAG
GTCAGACATTGCTTGGAAGAACGCAAACTATGCTCAGATTTGGGAATACCTTCGAGATGA
ATATGAGTTAACCCAAAGATTTTGGAACCTTGATTTTAAGTTGAAATTTGTTGAGCACAA
CATTCGTTTTCTTCAAGAGATCCTTCAGAACAGGAAGTCTGATTTTCTGGAATGGCTTAT
CATAATTTTGATTAGTGTGGAGATCCTGATATCTGTTTACAACATTGTTCAGGAGCAAAT
GTAGCTGACTATTGTGGGAATCCTTGCTGGGGCTGAAACCTCGTCAGAACCACTGTGGCA
CGAACCACGAATGACACGTTCTGTCTTGTGGATTTTTCAATGGATCAAGTAAGAGCCTTG
TATATGCG

consensusID : consensus_8547#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [AAGCTTGGGGCTTTTTGAAAGGTCAGACATTGGCTTGGAAGAACCCACAACTATGGCTCAGATTTGGGAATACACTTCGAGATGAATATGAGTTGAACCCCAAGATGTTGGGANACCTTGGATGTTTAAGTTGAAATTTGTTGGAGCNCAACCTGTGCGTGTTNTCTTCAAGAGATCCTTCAGAACCAAGGAAGTCTGATTTTCTGGAATGGGCTTGATGCATAATGTTTGGATTAGTGTGGGAGATCCTGATGATGCTGGTGTTGACAACATGTGTTGCCAGGANCAAAATGTAGCTCGACTATTGTGGGGAATCCCTTGCTGGGGGCTGAAACCTCGTGCAGAACCCCTGGTGGGCCCGAACCCCGAATGACACGTTCTNTCTTGTGGATTTTTCAATGGATCAAGTAAGACCCTTGTATAAAAAAAAAA]

[+] EMBL BM038382             [AAGCTTGGGGCTTTTTGAAAGGTCAGACATTGGCTTGGAAGAACCCACAACTATGGCTCAGATTTGGGAATACACTTCGAGATGAATATGAGTTGAACCCCAAGATGTTGGGANACCTTGGATGTTTAAGTTGAAATTTGTTGGAGCNCAACCTGTGCGTGTTNTCTTCAAGAGATCCTTCAGAACCAAGGAAGTCTGATTTTCTGGAATGGGCTTGATGCATAATGTTTGGATTAGTGTGGGAGATCCTGATGATGCTGGTGTTGACAACATGTGTTGCCAGGANCAAAATGTAGCTCGACTATTGTGGGGAATCCCTTGCTGGGGGCTGAAACCTCGTGCAGAACCCCTGGTGGGCCCGAACCCCGAATGACACGTTCTNTCTTGTGGATTTTTCAATGGATCAAGTAAGACCCTTGTATAAAAAAAAAA]




>consensus_8547#1
AAGCTTGGGGCTTTTTGAAAGGTCAGACATTGGCTTGGAAGAACCCACAACTATGGCTCA
GATTTGGGAATACACTTCGAGATGAATATGAGTTGAACCCCAAGATGTTGGGANACCTTG
GATGTTTAAGTTGAAATTTGTTGGAGCNCAACCTGTGCGTGTTNTCTTCAAGAGATCCTT
CAGAACCAAGGAAGTCTGATTTTCTGGAATGGGCTTGATGCATAATGTTTGGATTAGTGT
GGGAGATCCTGATGATGCTGGTGTTGACAACATGTGTTGCCAGGANCAAAATGTAGCTCG
ACTATTGTGGGGAATCCCTTGCTGGGGGCTGAAACCTCGTGCAGAACCCCTGGTGGGCCC
GAACCCCGAATGACACGTTCTNTCTTGTGGATTTTTCAATGGATCAAGTAAGACCCTTGT
ATAAAAAAAAAA

consensusID : consensus_8547#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence

                              [TGCCACGGAGCCAATGTAGCTGACTACTTGTGGGAATCCCTTGCTGGGGCTGAAACCTCGTCAGAACCACCTGGGGCCCGAACCCCGAATGACACCGTTCTGTCTTGTGGATTTTTCCATGGATCCAGTAAGAC]

[-] EMBL BM422218             [TGCCACGGAGCCAATGTAGCTGACTACTTGTGGGAATCCCTTGCTGGGGCTGAAACCTCGTCAGAACCACCTGGGGCCCGAACCCCGAATGACACCGTTCTGTCTTGTGGATTTTTCCATGGATCCAGTAAGAC]




>consensus_8547#2
TGCCACGGAGCCAATGTAGCTGACTACTTGTGGGAATCCCTTGCTGGGGCTGAAACCTCG
TCAGAACCACCTGGGGCCCGAACCCCGAATGACACCGTTCTGTCTTGTGGATTTTTCCAT
GGATCCAGTAAGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      GCCGCCGCCGTCATACTCATATCATATCTTCTTCTTCTTCTCCAAAAAAATACTAGTGTA 60
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      ATGTGTGATTTGTGAGAGATGATGGAGCTGTGTAGGATTCGAACCTTCCAGAAGAGCCTA 120
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      CTGAGGCCCCTCCTCCTCCTCCAGCATGCCCCTTGTAGAACCCTCCAAACCCTAGGGCGG 180
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      TCCCCTTCGCCCTCGGTGTTCCGGCCCCCCCCGCCGCCGCCCCCCGCTCCTCCTCCTCCT 240
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      CCTCCGCTCCTCCTTCGCCTCCGTCTCTCCGGGTCCGGCCCCCGGGAGCGGGACAGGCGA 300
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      ATGCCCCCCGCCCCCGCCCGCGCCCTTGCCGCCCGACGAGCTCGCCTCCGACGACGACGC 360
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      CTACTACCACGAGCACATTCTCGAGGCCACGCAGGAGGACCAAAGTCGCCTCGTTCCAGT 420
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      CAAGGCCTACTTCCCCTGCACCAGCATCAACCTCAAGAGCCTCCAGTCCCAGAATTCCTT 480
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      CAATGTCATCCCCCCCACTTCGCGTGCTACCAACTACGTCGTCCTCAGGTACTACGATGT 540
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      CAAGGGAGACCCAGAGGGTTTTAAGGCTGGCATCATAGATGAAAGTCATTGCCACTATAT 600
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      GGTGGTGTTCCAATATGGGTCCATTGTGCTGTTTAATGTTTCTGATCATGAAGCGGATGG 660
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      ATACCTGAAAATTGTTGAGAAGCATGCATCAGGCTTACTTCCAGAGATGAGAAAAGATGA 720
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      TTATGCTGTTGTTGAGAAGCCTACCTTGGAGGCATGGATGCAGGGTGGACTTGACTTCAT 780
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      CATACTCAGGGACCTAAGTATCGATGGGATTCGTACAATTGGAAGTGTCCTTGGTCAGAG 840
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      TATTGCCCTTGACTATTATATCCGGCAAGTAGATGGAATGGTAGCTGAGTTCACGGATAT 900
                                                                                  

consensus_8547#1      ------------------------------------------------------------
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      AAATCGTGGAATGGAAAAGACTGGTACCTTCACTATGGAAAGGAAAAAGCTTTTCCAGTT 960
                                                                                  

consensus_8547#1      ---------------------------------------AAGCTTGGGGCTTTTTGAAAG 21
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      GGTAGGAAAGGCTAACTCTAACCTGGCAGATGTTATTCTCAAGCTTGGGCTTTTTGAAAG 1020
                                                                                  

consensus_8547#1      GTCAGACATTGGCTTGGAAGAACCCACAACTATGGCTCAGATTTGGGAATACACTTCGAG 81
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      GTCAGACATTG-CTTGGAAGAACGCA-AACTATG-CTCAGATTTGGGAATAC-CTTCGAG 1076
                                                                                  

consensus_8547#1      ATGAATATGAGTTGAACCCCAAGATGTTGGGANACCTTGGATGTTTAAGTTGAAATTTGT 141
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      ATGAATATGAGTT-AACCCAAAGATTTTGG--AACCTTGAT--TTTAAGTTGAAATTTGT 1131
                                                                                  

consensus_8547#1      TGGAGCNCAACCTGTGCGTGTTNTCTTCAAGAGATCCTTCAGAACCAAGGAAGTCTGATT 201
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      TG-AGCACAACATTCG----TTTTCTTCAAGAGATCCTTCAGAAC--AGGAAGTCTGATT 1184
                                                                                  

consensus_8547#1      TTCTGGAATGGGCTTGATGCATAATGTTTGGATTAGTGTGGGAGATCCTGATGATGCTGG 261
consensus_8547#2      ------------------------------------------------------------
consensus_8547#0      TTCTGGAATGGCTTA---TCATAATTTT--GATTAGTGTGG-AGATCCTGATATC----- 1233
                                                                                  

consensus_8547#1      TGTTGACAACATGTGTTGCCAGGANCAAAATGTAGCTCGACTATTGTGGGGAATCCCTTG 321
consensus_8547#2      ----------------TGCCACGGAGCCAATGTAGCT-GACTACTTGTGGGAATCCCTTG 43
consensus_8547#0      TGTTTACAACA----TTGTTCAGGAGCAAATGTAGCT-GACTATTGTGGGAA--TCCTTG 1286
                                      **    *     ********* ***** *   ** *   *****

consensus_8547#1      CTGGGGGCTGAAACCTCGTGCAGAACCCCTGGTGGGCCCGAACCCCGAATGACAC-GTTC 380
consensus_8547#2      CTGGGG-CTGAAACCTCGT-CAGAACCACCTG-GGGCCCGAACCCCGAATGACACCGTTC 100
consensus_8547#0      CTGGGG-CTGAAACCTCGT-CAGAACCACTGT--GGCACGAACCACGAATGACAC-GTTC 1341
                      ****** ************ ******* *     *** ****** ********** ****

consensus_8547#1      TNTCTTGTGGATTTTTCAATGGATCAAGTAAGACCCTTGTATAAAAAAAAAA 432
consensus_8547#2      TGTCTTGTGGATTTTTCCATGGATCCAGTAAGAC------------------ 134
consensus_8547#0      TGTCTTGTGGATTTTTCAATGGATCAAGTAAGAGCCTTGTATATGCG----- 1388
                      * *************** ******* *******