Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8551 cluster # 8551       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8551#0 length = 1839 sequences # 5  

consensusID : consensus_8551#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1839
fasta sequence
                              [CTTCCTCCCTTCTCCTTTTCTTCTCCTCACCTCCCCACAGCCTCCTCCTCCCTTCCTCCCCACCTCTGAATTCATCGCTCCTCCTCCTTCGCTTCTGCAATTCAGAAGCTTCGGAATCAGAGGGGGGCAAAGGCGCCGCCTTTGGCTTGGTTTCTTTCTTTCTTGGGGTTGATCTTGGGTGAGTTCTTTCTCGAGGAAATTCGAGCAAAAACGAGGGAGGATTCGAGTGATTGTGTTCTTGGATAGATACATGTTCTTGGGAGAGAGGCTTGTTTTCATGTGTTTTCTTGGAGGATTTGCTGTGTGAAGGAAATCACCCTTTTTTCATTTTCCATTTTGTTGATGAGCTGGGGCTGATTTTTTGGAGGGTTGGCGTTAAAGACTCCGCCTTTGACTGTTCTTGGTGTGTGGATTTTTTTTTACAGCTTTCTTGAAGCAATTTGGTTGTCTCCTGGGAGTGTTGGTTGGTGGTTGGATTCTTGTGTTTGTTTTGTTCGAGTAGTTGGGAGAGTGGTTTTATGGGGAGAATTTAGGTGCTTTTATGAGGAATTCAGGTCAAATTAGGCGCCTTTGGTTCTTGATTTCCCAGGAGGTTTTGATTTGATTTGGTTTTTCCTTTTGAAATTTGGTGAGAGAGCTTCCTTCAATCCTCTACTTGTTTTGATGGTTGGAGGTGATAGGGGACACATTTGATTCTCCTTTGTAGACAAACCACAAACTTAGAGTTGGATTTGATCCTTTCTTGGGAGGATTTGGAGTGAAATAGTCCAGTTTAGTATTTGGGAGAAAAATATTTGGTCCTTCAGTGCTTTCTTTTGGAGAATTAAGTCTGTTCATCCAAGAATTTGAGGGGGAAGAAGGCGGCACTTTCTACAGGATTGGAAGTCGCTAATGGCACAACCTGACATTCCAGCATTTGGGAACTGGGACACCACTGGCAACACACCATACAAACAGAAGTTTGAGAATGCCCGCAAAAACAAGAAAGCGGGCATTTCTTCCCATCCCAACGATCCAAGGAGGCACCCTGAACCTCCATCCAAGTCACCTTTGCATCCAGCATACACACCTGATGCTCAGGGGCAGAGTCCAATGAATCCACAGCATGGAAGAAGGCAGGAAGCTGATCCCCATCGACGGCATTCGCTTTCTCAGCAGCGAGAGGTAGGCGGTAGCATCGGTAGCGCACCGAGAAGCCCATACAGGATGGTTCATGGCTCCGCTTCACCAGCGCAGCCGAACAACCCATCGAAGCCGAAGCACAGGTCATCTGGAATGCAGACTCCAGAGAGGAGGGCTTCATCGGAGGGACATGGCCAGCATACTCCTAGGAGGAGCAGGGACAAGCAGGGTGGCCGAGGCTATGATGCACCTGAAGATGATGTAGCTGTTCCACCGTTTGGTGAGTGGGATGAGGGTAATGCAGCATCAGGCGAAAAATTTACTGGTATCTTCAACAGGGTGAGGGATGATAAATTATCGCCAAACACTTCTACCAGGCAACCGGACACTAATCGCAGCCAGGAAAACAAAGTGAAACAGACATGCCCTTGCTGTATACTTTGAGACAACGGGGGATAAGATCACAGATATTGCTGGAGAGGTTCCTTAGCTACTTGTTGATCAGATTGCTACATTGTGAATTTTCAATTTTCATCGAACTCTGTTCATGTATTGTTTTC-CACGTTTATTGTTGTCGGT-GTGA-GT-AT-GT-AT-CT-GTAATTGAATTTTCCAGTCATCTAGTTTCTATGATTATTCGAAACATATATAGGGTGCCGTTT-GGCTCTGGGAAGCATGGAGTGAGAAATTTT-CCTTGCTGATAATAAAATGTTTCCAGAAAAA]

[+] EMBL AK101106             [CTTCCTCCCTTCTCCTTTTCTTCTCCTCACCTCCCCACAGCCTCCTCCTCCCTTCCTCCCCACCTCTGAATTCATCGCTCCTCCTCCTTCGCTTCTGCAATTCAGAAGCTTCGGAATCAGAGGGGGGCAAAGGCGCCGCCTTTGGCTTGGTTTCTTTCTTTCTTGGGGTTGATCTTGGGTGAGTTCTTTCTCGAGGAAATTCGAGCAAAAACGAGGGAGGATTCGAGTGATTGTGTTCTTGGATAGATACATGTTCTTGGGAGAGAGGCTTGTTTTCATGTGTTTTCTTGGAGGATTTGCTGTGTGAAGGAAATCACCCTTTTTTCATTTTCCATTTTGTTGATGAGCTGGGGCTGATTTTTTGGAGGGTTGGCGTTAAAGACTCCGCCTTTGACTGTTCTTGGTGTGTGGATTTTTTTTTACAGCTTTCTTGAAGCAATTTGGTTGTCTCCTGGGAGTGTTGGTTGGTGGTTGGATTCTTGTGTTTGTTTTGTTCGAGTAGTTGGGAGAGTGGTTTTATGGGGAGAATTTAGGTGCTTTTATGAGGAATTCAGGTCAAATTAGGCGCCTTTGGTTCTTGATTTCCCAGGAGGTTTTGATTTGATTTGGTTTTTCCTTTTGAAATTTGGTGAGAGAGCTTCCTTCAATCCTCTACTTGTTTTGATGGTTGGAGGTGATAGGGGACACATTTGATTCTCCTTTGTAGACAAACCACAAACTTAGAGTTGGATTTGATCCTTTCTTGGGAGGATTTGGAGTGAAATAGTCCAGTTTAGTATTTGGGAGAAAAATATTTGGTCCTTCAGTGCTTTCTTTTGGAGAATTAAGTCTGTTCATCCAAGAATTTGAGGGGGAAGAAGGCGGCACTTTCTACAGGATTGGAAGTCGCTAATGGCACAACCTGACATTCCAGCATTTGGGAACTGGGACACCACTGGCAACACACCATACAAACAGAAGTTTGAGAATGCCCGCAAAAACAAGAAAGCGGGCATTTCTTCCCATCCCAACGATCCAAGGAGGCACCCTGAACCTCCATCCAAGTCACCTTTGCATCCAGCATACACACCTGATGCTCAGGGGCAGAGTCCAATGAATCCACAGCATGGAAGAAGGCAGGAAGCTGATCCCCATCGACGGCATTCGCTTTCTCAGCAGCGAGAGGTAGGCGGTAGCATCGGTAGCGCACCGAGAAGCCCATACAGGATGGTTCATGGCTCCGCTTCACCAGCGCAGCCGAACAACCCATCGAAGCCGAAGCACAGGTCATCTGGAATGCAGACTCCAGAGAGGAGGGCTTCATCGGAGGGACATGGCCAGCATACTCCTAGGAGGAGCAGGGACAAGCAGGGTGGCCGAGGCTATGATGCACCTGAAGATGATGTAGCTGTTCCACCGTTTGGTGAGTGGGATGAGGGTAATGCAGCATCAGGCGAAAAATTTACTGGTATCTTCAACAGGGTGAGGGATGATAAATTATCGCCAAACACTTCTACCAGGCAACCGGACACTAATCGCAGCCAGGAAAACAAAGTGAAACAGACATGCCCTTGCTGTATACTTTGAGACAACGGGGGATAAGATCACAGATATTGCTGGAGAGGTTCCTTAGCTACTTGTTGATCAGATTGCTACATTGTGAATTTTCAATTTTCATCGAACTCTGTTCATGTATTGTTTTC CACGTTTATTGTTGTCGGT GTGA GT AT GT AT CT GTAATTGAATTTTCCAGTCATCTAGTTTCTATGATTATTCGAAACATATATAGGGTGCCGTTT GGCTCTGGGAAGCATGGAGTGAGAAATTTT CCTTGCTGATAATAAAATGT           ]
[+] EMBL CB637549             [                                                                                 TCCTCCTTCGCTTCTGCAATTCAGAAGCTTCGGAATCAGAGGGGGGCAAAGGCGCCGCCTTTGGCTTGGTTTCTTTCTTTCTTGGGGTTGATCTTGGGTGAGTTCTTTCTCGAGGAAATTCGAGCAAAAACGAGGGAGGATTCGAGTGATTGTGTTCTTGGATAGATACATGTTCTTGGGAGAGAGGCTTGTTTTCATGTGTTTTCTTGGAGGATTTGCTGTGTGAAGGAAATCACCCTTTTTTCATTTTCCATTTTGTTGATGAGCTGGGGCTGATTTTTTGGAGGGTTGGCGTTAAAGACTCCGCCTTTGACTGTTCTTGGTGTGTGGATTTTTTTTTACAGCTTTCTTGAAGCAATTTGGTTGTCTCCTGNGAGTGTTGGTTGGTGGTTGGATTCTTGTGTTTGTTTTGTTCGAGTAGTTGGGAGAGTGGCTTTATGGGGAGAANTTAGGTGCTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB637550             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCAGCATACTCCTAGGAGGAGCAGGGACAAGCAGGGTGGCCGAGGCTATGATGCACCTGAAGATGATGTAGCTGTTCCACCGTTTGGTGAGTGGGATGAGGGTAATGCAGCATCAGGCGAAAAATTTACTGGTATCTTCAACAGGGTGAGGGATGATAAATTATCGCCAAACACTTCTACCAGGCAACCGGACACTAATCGCAGCCAGGAAAACAAAGTGAAACAGACATGCCCTTGCTGTATACTTTGAGACAACGGGGGATAAGATCACAGATATTGCTGGAGAGGTTCCTTAGCTACTTGTTGATCAGATTGCTACATTGTGAATTTTCAATTTTCATCAAACTCTGTTCATGTATTGTTTTCACACGTTTATTGTTGTCGGT GTGA GT AT GT AT CT GTAATTGAATTTTCCAGTCATCTAGTTTCTATGATTATTCGAAACATATATAGGGTGCCGTTT GGCTCTGGGAAGCATGGAGTGAGAAATTTTGCCTTGTTGATAATAAAATGTTTCCA      ]
[+] EMBL CA766014             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGGGGATAAGATCACAGATATTGCTGGAGAGGTTCCTTAGCTACTTGTTGATCAGATTGCTACATTGTGAATTTTCAATTTTCATCGAACTCTGTTCATGTATTGTTTTC CACGTTTATTGTTGTCGGT GTGA GT AT GT AT CT GTAATTGAATTTTCCAGTCATCTAGTTTATGTGATTATCTGAAACATATATAGGGTGTCATTTAGGTTCTGTGAAGCATGGAGTGAGAAATTTT CCTTGCTG                       ]
[+] EMBL BI811037             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              gtgcgGGTGGTGAGGTGATGGTGATGCTGGTAATTGAATTTTCCAGTCATCTAGTTTCTATGATTATTCGAAACATATATAGGGT CCGTTT GGCTCTGGGAAGCATGGAGTGAGAAATTTT CCTTGCTGATAATAAAATGTTTCCAGAAAAA]


>consensus_8551#0 CTTCCTCCCTTCTCCTTTTCTTCTCCTCACCTCCCCACAGCCTCCTCCTCCCTTCCTCCC CACCTCTGAATTCATCGCTCCTCCTCCTTCGCTTCTGCAATTCAGAAGCTTCGGAATCAG AGGGGGGCAAAGGCGCCGCCTTTGGCTTGGTTTCTTTCTTTCTTGGGGTTGATCTTGGGT GAGTTCTTTCTCGAGGAAATTCGAGCAAAAACGAGGGAGGATTCGAGTGATTGTGTTCTT GGATAGATACATGTTCTTGGGAGAGAGGCTTGTTTTCATGTGTTTTCTTGGAGGATTTGC TGTGTGAAGGAAATCACCCTTTTTTCATTTTCCATTTTGTTGATGAGCTGGGGCTGATTT TTTGGAGGGTTGGCGTTAAAGACTCCGCCTTTGACTGTTCTTGGTGTGTGGATTTTTTTT TACAGCTTTCTTGAAGCAATTTGGTTGTCTCCTGGGAGTGTTGGTTGGTGGTTGGATTCT TGTGTTTGTTTTGTTCGAGTAGTTGGGAGAGTGGTTTTATGGGGAGAATTTAGGTGCTTT TATGAGGAATTCAGGTCAAATTAGGCGCCTTTGGTTCTTGATTTCCCAGGAGGTTTTGAT TTGATTTGGTTTTTCCTTTTGAAATTTGGTGAGAGAGCTTCCTTCAATCCTCTACTTGTT TTGATGGTTGGAGGTGATAGGGGACACATTTGATTCTCCTTTGTAGACAAACCACAAACT TAGAGTTGGATTTGATCCTTTCTTGGGAGGATTTGGAGTGAAATAGTCCAGTTTAGTATT TGGGAGAAAAATATTTGGTCCTTCAGTGCTTTCTTTTGGAGAATTAAGTCTGTTCATCCA AGAATTTGAGGGGGAAGAAGGCGGCACTTTCTACAGGATTGGAAGTCGCTAATGGCACAA CCTGACATTCCAGCATTTGGGAACTGGGACACCACTGGCAACACACCATACAAACAGAAG TTTGAGAATGCCCGCAAAAACAAGAAAGCGGGCATTTCTTCCCATCCCAACGATCCAAGG AGGCACCCTGAACCTCCATCCAAGTCACCTTTGCATCCAGCATACACACCTGATGCTCAG GGGCAGAGTCCAATGAATCCACAGCATGGAAGAAGGCAGGAAGCTGATCCCCATCGACGG CATTCGCTTTCTCAGCAGCGAGAGGTAGGCGGTAGCATCGGTAGCGCACCGAGAAGCCCA TACAGGATGGTTCATGGCTCCGCTTCACCAGCGCAGCCGAACAACCCATCGAAGCCGAAG CACAGGTCATCTGGAATGCAGACTCCAGAGAGGAGGGCTTCATCGGAGGGACATGGCCAG CATACTCCTAGGAGGAGCAGGGACAAGCAGGGTGGCCGAGGCTATGATGCACCTGAAGAT GATGTAGCTGTTCCACCGTTTGGTGAGTGGGATGAGGGTAATGCAGCATCAGGCGAAAAA TTTACTGGTATCTTCAACAGGGTGAGGGATGATAAATTATCGCCAAACACTTCTACCAGG CAACCGGACACTAATCGCAGCCAGGAAAACAAAGTGAAACAGACATGCCCTTGCTGTATA CTTTGAGACAACGGGGGATAAGATCACAGATATTGCTGGAGAGGTTCCTTAGCTACTTGT TGATCAGATTGCTACATTGTGAATTTTCAATTTTCATCGAACTCTGTTCATGTATTGTTT TCCACGTTTATTGTTGTCGGTGTGAGTATGTATCTGTAATTGAATTTTCCAGTCATCTAG TTTCTATGATTATTCGAAACATATATAGGGTGCCGTTTGGCTCTGGGAAGCATGGAGTGA GAAATTTTCCTTGCTGATAATAAAATGTTTCCAGAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)