These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1839 fasta sequence [CTTCCTCCCTTCTCCTTTTCTTCTCCTCACCTCCCCACAGCCTCCTCCTCCCTTCCTCCCCACCTCTGAATTCATCGCTCCTCCTCCTTCGCTTCTGCAATTCAGAAGCTTCGGAATCAGAGGGGGGCAAAGGCGCCGCCTTTGGCTTGGTTTCTTTCTTTCTTGGGGTTGATCTTGGGTGAGTTCTTTCTCGAGGAAATTCGAGCAAAAACGAGGGAGGATTCGAGTGATTGTGTTCTTGGATAGATACATGTTCTTGGGAGAGAGGCTTGTTTTCATGTGTTTTCTTGGAGGATTTGCTGTGTGAAGGAAATCACCCTTTTTTCATTTTCCATTTTGTTGATGAGCTGGGGCTGATTTTTTGGAGGGTTGGCGTTAAAGACTCCGCCTTTGACTGTTCTTGGTGTGTGGATTTTTTTTTACAGCTTTCTTGAAGCAATTTGGTTGTCTCCTGGGAGTGTTGGTTGGTGGTTGGATTCTTGTGTTTGTTTTGTTCGAGTAGTTGGGAGAGTGGTTTTATGGGGAGAATTTAGGTGCTTTTATGAGGAATTCAGGTCAAATTAGGCGCCTTTGGTTCTTGATTTCCCAGGAGGTTTTGATTTGATTTGGTTTTTCCTTTTGAAATTTGGTGAGAGAGCTTCCTTCAATCCTCTACTTGTTTTGATGGTTGGAGGTGATAGGGGACACATTTGATTCTCCTTTGTAGACAAACCACAAACTTAGAGTTGGATTTGATCCTTTCTTGGGAGGATTTGGAGTGAAATAGTCCAGTTTAGTATTTGGGAGAAAAATATTTGGTCCTTCAGTGCTTTCTTTTGGAGAATTAAGTCTGTTCATCCAAGAATTTGAGGGGGAAGAAGGCGGCACTTTCTACAGGATTGGAAGTCGCTAATGGCACAACCTGACATTCCAGCATTTGGGAACTGGGACACCACTGGCAACACACCATACAAACAGAAGTTTGAGAATGCCCGCAAAAACAAGAAAGCGGGCATTTCTTCCCATCCCAACGATCCAAGGAGGCACCCTGAACCTCCATCCAAGTCACCTTTGCATCCAGCATACACACCTGATGCTCAGGGGCAGAGTCCAATGAATCCACAGCATGGAAGAAGGCAGGAAGCTGATCCCCATCGACGGCATTCGCTTTCTCAGCAGCGAGAGGTAGGCGGTAGCATCGGTAGCGCACCGAGAAGCCCATACAGGATGGTTCATGGCTCCGCTTCACCAGCGCAGCCGAACAACCCATCGAAGCCGAAGCACAGGTCATCTGGAATGCAGACTCCAGAGAGGAGGGCTTCATCGGAGGGACATGGCCAGCATACTCCTAGGAGGAGCAGGGACAAGCAGGGTGGCCGAGGCTATGATGCACCTGAAGATGATGTAGCTGTTCCACCGTTTGGTGAGTGGGATGAGGGTAATGCAGCATCAGGCGAAAAATTTACTGGTATCTTCAACAGGGTGAGGGATGATAAATTATCGCCAAACACTTCTACCAGGCAACCGGACACTAATCGCAGCCAGGAAAACAAAGTGAAACAGACATGCCCTTGCTGTATACTTTGAGACAACGGGGGATAAGATCACAGATATTGCTGGAGAGGTTCCTTAGCTACTTGTTGATCAGATTGCTACATTGTGAATTTTCAATTTTCATCGAACTCTGTTCATGTATTGTTTTC-CACGTTTATTGTTGTCGGT-GTGA-GT-AT-GT-AT-CT-GTAATTGAATTTTCCAGTCATCTAGTTTCTATGATTATTCGAAACATATATAGGGTGCCGTTT-GGCTCTGGGAAGCATGGAGTGAGAAATTTT-CCTTGCTGATAATAAAATGTTTCCAGAAAAA] [+] EMBL AK101106 [CTTCCTCCCTTCTCCTTTTCTTCTCCTCACCTCCCCACAGCCTCCTCCTCCCTTCCTCCCCACCTCTGAATTCATCGCTCCTCCTCCTTCGCTTCTGCAATTCAGAAGCTTCGGAATCAGAGGGGGGCAAAGGCGCCGCCTTTGGCTTGGTTTCTTTCTTTCTTGGGGTTGATCTTGGGTGAGTTCTTTCTCGAGGAAATTCGAGCAAAAACGAGGGAGGATTCGAGTGATTGTGTTCTTGGATAGATACATGTTCTTGGGAGAGAGGCTTGTTTTCATGTGTTTTCTTGGAGGATTTGCTGTGTGAAGGAAATCACCCTTTTTTCATTTTCCATTTTGTTGATGAGCTGGGGCTGATTTTTTGGAGGGTTGGCGTTAAAGACTCCGCCTTTGACTGTTCTTGGTGTGTGGATTTTTTTTTACAGCTTTCTTGAAGCAATTTGGTTGTCTCCTGGGAGTGTTGGTTGGTGGTTGGATTCTTGTGTTTGTTTTGTTCGAGTAGTTGGGAGAGTGGTTTTATGGGGAGAATTTAGGTGCTTTTATGAGGAATTCAGGTCAAATTAGGCGCCTTTGGTTCTTGATTTCCCAGGAGGTTTTGATTTGATTTGGTTTTTCCTTTTGAAATTTGGTGAGAGAGCTTCCTTCAATCCTCTACTTGTTTTGATGGTTGGAGGTGATAGGGGACACATTTGATTCTCCTTTGTAGACAAACCACAAACTTAGAGTTGGATTTGATCCTTTCTTGGGAGGATTTGGAGTGAAATAGTCCAGTTTAGTATTTGGGAGAAAAATATTTGGTCCTTCAGTGCTTTCTTTTGGAGAATTAAGTCTGTTCATCCAAGAATTTGAGGGGGAAGAAGGCGGCACTTTCTACAGGATTGGAAGTCGCTAATGGCACAACCTGACATTCCAGCATTTGGGAACTGGGACACCACTGGCAACACACCATACAAACAGAAGTTTGAGAATGCCCGCAAAAACAAGAAAGCGGGCATTTCTTCCCATCCCAACGATCCAAGGAGGCACCCTGAACCTCCATCCAAGTCACCTTTGCATCCAGCATACACACCTGATGCTCAGGGGCAGAGTCCAATGAATCCACAGCATGGAAGAAGGCAGGAAGCTGATCCCCATCGACGGCATTCGCTTTCTCAGCAGCGAGAGGTAGGCGGTAGCATCGGTAGCGCACCGAGAAGCCCATACAGGATGGTTCATGGCTCCGCTTCACCAGCGCAGCCGAACAACCCATCGAAGCCGAAGCACAGGTCATCTGGAATGCAGACTCCAGAGAGGAGGGCTTCATCGGAGGGACATGGCCAGCATACTCCTAGGAGGAGCAGGGACAAGCAGGGTGGCCGAGGCTATGATGCACCTGAAGATGATGTAGCTGTTCCACCGTTTGGTGAGTGGGATGAGGGTAATGCAGCATCAGGCGAAAAATTTACTGGTATCTTCAACAGGGTGAGGGATGATAAATTATCGCCAAACACTTCTACCAGGCAACCGGACACTAATCGCAGCCAGGAAAACAAAGTGAAACAGACATGCCCTTGCTGTATACTTTGAGACAACGGGGGATAAGATCACAGATATTGCTGGAGAGGTTCCTTAGCTACTTGTTGATCAGATTGCTACATTGTGAATTTTCAATTTTCATCGAACTCTGTTCATGTATTGTTTTC CACGTTTATTGTTGTCGGT GTGA GT AT GT AT CT GTAATTGAATTTTCCAGTCATCTAGTTTCTATGATTATTCGAAACATATATAGGGTGCCGTTT GGCTCTGGGAAGCATGGAGTGAGAAATTTT CCTTGCTGATAATAAAATGT ] [+] EMBL CB637549 [ TCCTCCTTCGCTTCTGCAATTCAGAAGCTTCGGAATCAGAGGGGGGCAAAGGCGCCGCCTTTGGCTTGGTTTCTTTCTTTCTTGGGGTTGATCTTGGGTGAGTTCTTTCTCGAGGAAATTCGAGCAAAAACGAGGGAGGATTCGAGTGATTGTGTTCTTGGATAGATACATGTTCTTGGGAGAGAGGCTTGTTTTCATGTGTTTTCTTGGAGGATTTGCTGTGTGAAGGAAATCACCCTTTTTTCATTTTCCATTTTGTTGATGAGCTGGGGCTGATTTTTTGGAGGGTTGGCGTTAAAGACTCCGCCTTTGACTGTTCTTGGTGTGTGGATTTTTTTTTACAGCTTTCTTGAAGCAATTTGGTTGTCTCCTGNGAGTGTTGGTTGGTGGTTGGATTCTTGTGTTTGTTTTGTTCGAGTAGTTGGGAGAGTGGCTTTATGGGGAGAANTTAGGTGCTTT ] [-] EMBL CB637550 [ CCAGCATACTCCTAGGAGGAGCAGGGACAAGCAGGGTGGCCGAGGCTATGATGCACCTGAAGATGATGTAGCTGTTCCACCGTTTGGTGAGTGGGATGAGGGTAATGCAGCATCAGGCGAAAAATTTACTGGTATCTTCAACAGGGTGAGGGATGATAAATTATCGCCAAACACTTCTACCAGGCAACCGGACACTAATCGCAGCCAGGAAAACAAAGTGAAACAGACATGCCCTTGCTGTATACTTTGAGACAACGGGGGATAAGATCACAGATATTGCTGGAGAGGTTCCTTAGCTACTTGTTGATCAGATTGCTACATTGTGAATTTTCAATTTTCATCAAACTCTGTTCATGTATTGTTTTCACACGTTTATTGTTGTCGGT GTGA GT AT GT AT CT GTAATTGAATTTTCCAGTCATCTAGTTTCTATGATTATTCGAAACATATATAGGGTGCCGTTT GGCTCTGGGAAGCATGGAGTGAGAAATTTTGCCTTGTTGATAATAAAATGTTTCCA ] [+] EMBL CA766014 [ GGGGGATAAGATCACAGATATTGCTGGAGAGGTTCCTTAGCTACTTGTTGATCAGATTGCTACATTGTGAATTTTCAATTTTCATCGAACTCTGTTCATGTATTGTTTTC CACGTTTATTGTTGTCGGT GTGA GT AT GT AT CT GTAATTGAATTTTCCAGTCATCTAGTTTATGTGATTATCTGAAACATATATAGGGTGTCATTTAGGTTCTGTGAAGCATGGAGTGAGAAATTTT CCTTGCTG ] [+] EMBL BI811037 [ gtgcgGGTGGTGAGGTGATGGTGATGCTGGTAATTGAATTTTCCAGTCATCTAGTTTCTATGATTATTCGAAACATATATAGGGT CCGTTT GGCTCTGGGAAGCATGGAGTGAGAAATTTT CCTTGCTGATAATAAAATGTTTCCAGAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||