cluster # 8555

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Oryza sativa
cluster # 8555 cluster # 8555 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8555#0 length = 525 sequences # 3

consensus_8555#1 length = 332 sequences # 1
consensus_8555#2 length = 263 sequences # 1

consensusID : consensus_8555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 525
fasta sequence

                              [GCAAGTGCAGATCCACAGTCTAAATCTTCC-AGTGAACCAGTCCATTTCACCAAGAGTGTCACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAGAAACTGATTGATGACTATAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATATCATGAAA----CAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATCGCTTTAT-AAAATCAAAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAAATGATTGTGTNAAATTCTTGATCGNGTTTCTGATGAGAAT-CGACGGACGGTTCTAATTTTCTGAGCATTTCTTAATCTAGTTNTAGCAATTCCCCGCTTAGCTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAAAGGCGGGCCCGCCCCCGGGGGNGGAGCCTTCANGCTTTTGGTTCCCNTTTANTNGNNGGGTTAA]

[+] EMBL CB096845             [GCAAGTGCAGATCCACAGTCTAAATCTTCC AGTGAGCCAGTCCATTTCACCAAGAGTGTCACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAGAAACTGATTGATGACTATAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATATCATGAAA    CAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATCGCTTTATAAAAATCAAAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAAATGATTGTGTNAAATTCTTGATCGNGTTTCTGATGAGAAT CGACGGACGGTTCTAATTTTCTGAGCATTTCTTAATCTAGTTNTAGCAATTCCCCGCTTAGCTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAAAGGCGGGCCCGCCCCCGGGGGNGGAGCCTTCANGCTTTTGGTTCCCNTTTANTNGNNGGGTTAA]
[+] EMBL BI806139             [GCAAGT CAGATCCACATTCTAAATCTTCCAAGTGAACCAGTCCATTTCACTAAGAGTGTCACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAGAAACTGATTGATGACTACAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATGTCATGAAACAACCAACCATTCACCTACTACATCTGTTAGTTTTTGCATATGACTAGCAAGGAATCGCTTTAT AAAATCAAATCTTAACTcaaaa                                                                                                                                                                                                                                                  ]
[+] EMBL BI800240             [  cAGTGCAGATCCACAGTCTAAATCTTCC AGTGAACCAGTCCATTTCACCAAGAGTGTCACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAGAAACTGATTGATGACTATAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATATCATGAAA    CAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATCGCTTTAT AAAATC AAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCT GTA TAACTGCTG AAATGA TGTGT  CATTCTTGATCGTGTTTCTGATGAGAATCCGACGGACGGTTCTAAaaaa                                                                                                                                         ]




>consensus_8555#0
GCAAGTGCAGATCCACAGTCTAAATCTTCCAGTGAACCAGTCCATTTCACCAAGAGTGTC
ACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAG
AAACTGATTGATGACTATAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTA
TTGATATCAATATATCATGAAACAACCATTCGCCTGCTACATCTGTTAGTTTTTACATAT
GACTAGCAAGGAATCGCTTTATAAAATCAAAGCTTAACTGCATTTTGTTAGACAATTTTG
TGACATGTCCTGGTATTAACTGCTGAAAATGATTGTGTNAAATTCTTGATCGNGTTTCTG
ATGAGAATCGACGGACGGTTCTAATTTTCTGAGCATTTCTTAATCTAGTTNTAGCAATTC
CCCGCTTAGCTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAAAGGCGGGCCCGCCCCCGGG
GGNGGAGCCTTCANGCTTTTGGTTCCCNTTTANTNGNNGGGTTAA

consensusID : consensus_8555#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence

                              [TGCAGGATNCGGCNCGAGTTCACTAAGAGTGTCACNAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAAGTTTGTTCTGGAAAGATGTTGAGAAACTGATTGATGACTACAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATGTCATGAAACAACCAACCATTCACCTACTACATCTGTTAGTTTTTGCATATGACTAGCAAGGAATCGCTTTATAAAATCAAATCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAATGATGTGTCAATTCCTGAGGTCCTGGT]

[+] EMBL AA753158             [TGCAGGATNCGGCNCGAGTTCACTAAGAGTGTCACNAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAAGTTTGTTCTGGAAAGATGTTGAGAAACTGATTGATGACTACAACAGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATGTCATGAAACAACCAACCATTCACCTACTACATCTGTTAGTTTTTGCATATGACTAGCAAGGAATCGCTTTATAAAATCAAATCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAATGATGTGTCAATTCCTGAGGTCCTGGT]




>consensus_8555#1
TGCAGGATNCGGCNCGAGTTCACTAAGAGTGTCACNAAATGGTTCACCAAGGATGGGGTT
CTTGTGGAAAGTTTGTTCTGGAAAGATGTTGAGAAACTGATTGATGACTACAACAGTGAC
CACAGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATGTCATGAAACAACC
AACCATTCACCTACTACATCTGTTAGTTTTTGCATATGACTAGCAAGGAATCGCTTTATA
AAATCAAATCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGC
TGAAATGATGTGTCAATTCCTGAGGTCCTGGT

consensusID : consensus_8555#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [AGAACGAGACAAGGGGGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATACCATGAAACAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATCGCTTTATAAAATCAAAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAATGATGTGTCAATTCTTGATCGTGTTTTTGATGAGAATCGACGGACGGTTCTAATTTCAAAAAAAAAAAAA]

[-] EMBL CA761059             [AGAACGAGACAAGGGGGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATACCATGAAACAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATCGCTTTATAAAATCAAAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTATTAACTGCTGAAATGATGTGTCAATTCTTGATCGTGTTTTTGATGAGAATCGACGGACGGTTCTAATTTCAAAAAAAAAAAAA]




>consensus_8555#2
AGAACGAGACAAGGGGGGAGCAAATGAAAGGATAGCTTGTACTTATTGATATCAATATAC
CATGAAACAACCATTCGCCTGCTACATCTGTTAGTTTTTACATATGACTAGCAAGGAATC
GCTTTATAAAATCAAAGCTTAACTGCATTTTGTTAGACAATTTTGTGACATGTCCTGGTA
TTAACTGCTGAAATGATGTGTCAATTCTTGATCGTGTTTTTGATGAGAATCGACGGACGG
TTCTAATTTCAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8555#0      GCAAGTGCAGATCCACAGTCTAAATCTTCCAGTGAACCAGTCCATTTCACCAAGAGTGTC 60
consensus_8555#1      ---------------------------TGCAGGATNCGGCNCGAGTTCACTAAGAGTGTC 33
consensus_8555#2      ------------------------------------------------------------
                                                                                  

consensus_8555#0      ACAAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAGGTTTGTTCTGGAAGGATGTTGAG 120
consensus_8555#1      ACNAAATGGTTCACCAAGGATGGGGTTCTTGTGGAAAGTTTGTTCTGGAAAGATGTTGAG 93
consensus_8555#2      ------------------------------------------------------------
                                                                                  

consensus_8555#0      AAACTGATTGATGACTATAAC-AGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTT 179
consensus_8555#1      AAACTGATTGATGACTACAAC-AGTGACCACAGGAGCAAATGAAAGGATAGCTTGTACTT 152
consensus_8555#2      ----------------AGAACGAGACAAGGGGGGAGCAAATGAAAGGATAGCTTGTACTT 44
                                      * *** **  *     ****************************

consensus_8555#0      ATTGATATCAATATATCATGAAACAACCA----TTCGCCTGCTACATCTGTTAGTTTTTA 235
consensus_8555#1      ATTGATATCAATATGTCATGAAACAACCAACCATTCACCTACTACATCTGTTAGTTTTTG 212
consensus_8555#2      ATTGATATCAATATACCATGAAACAACCA----TTCGCCTGCTACATCTGTTAGTTTTTA 100
                      **************  *************    *** *** ****************** 

consensus_8555#0      CATATGACTAGCAAGGAATCGCTTTATAAAATCAAAGCTTAACTGCATTTTGTTAGACAA 295
consensus_8555#1      CATATGACTAGCAAGGAATCGCTTTATAAAATCAAATCTTAACTGCATTTTGTTAGACAA 272
consensus_8555#2      CATATGACTAGCAAGGAATCGCTTTATAAAATCAAAGCTTAACTGCATTTTGTTAGACAA 160
                      ************************************ ***********************

consensus_8555#0      TTTTGTGACATGTCCTGGTATTAACTGCTGAAAATGATTGTGTNAAATTCTTGATCGNGT 355
consensus_8555#1      TTTTGTGACATGTCCTGGTATTAACTGCTGAAA-TGAT-GTGTCAATTCCT-----GAGG 325
consensus_8555#2      TTTTGTGACATGTCCTGGTATTAACTGCTGAAA-TGAT-GTGTCAATTCTT-GATCGTGT 217
                      ********************************* **** **** ** *  *     * * 

consensus_8555#0      TTCTGATGAGAATCGACGGACGGTTCTAATTTTCTGAGCATTTCTTAATCTAGTTNTAGC 415
consensus_8555#1      TCCTGGT----------------------------------------------------- 332
consensus_8555#2      TTTTGATGAGAATCGACGGACGGTTCTAATTTCAAAAAAAAAAAAA-------------- 263
                      *  ** *                                                     

consensus_8555#0      AATTCCCCGCTTAGCTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAAAGGCGGGCCCGCCC 475
consensus_8555#1      ------------------------------------------------------------
consensus_8555#2      ------------------------------------------------------------
                                                                                  

consensus_8555#0      CCGGGGGNGGAGCCTTCANGCTTTTGGTTCCCNTTTANTNGNNGGGTTAA 525
consensus_8555#1      --------------------------------------------------
consensus_8555#2      --------------------------------------------------