These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1178 fasta sequence [GATAAGATAGGCACAGACCTGCCTATATTGTCACAATTTTTCTACAGAGCATAAAAGTTGGTGCAATGTGAATGCACGTGCAATCACTGACCAAACTACCAAACTCATGCTCCTTAGTAGTTCTATCTTCAGGTTGGGTGCAATAACTGATTAATTTATTTTGGTGATTTATTGTAATTAAGATTGAAGCTGTGACAAGAAGGATTTTGAGGATCACTTCAACTGACGGAGCAGCCAAAATACTTGTTTTTTCAAGCTGGAATGATGTTCTTGATGTGCTAGAGCACTCCCTTGCCGCTAACAATATCTCTTATGTTCGGATGAAAGGAGGAAGAAAATCGCAAACAGCGCTTGCCCAGTTCAAAGGTCTGGCAAGTAGTATAAGTGGAGAGAAAGCAAAGAAGTCATTTTCCAAGATGCAACCTGCTCAAGTATTGCTAATGCTTATCCAGCATGGTGCAAATGGTCTTAATCTTTTGGAAGCACAACATGTAATATTAGTGGAGCCGTTGTTAAACCCTGCAGCTGAGGCGCAAGCTATCAGCAGGATCCATAGAGTTGGGCAAGACAAAAGCACGTTTATCCACCGTTTTATTGTGAAGAATACTATTGAAGAGAGCATCTACAAATTAAACAGGGGCAGAGCTGTTTGCTCCACGATACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGTCTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCAGGTGGGCATATGAGAAGTTTACCTCCATCTGTTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAACTGGAACTCGGAGAGGCA-ATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT--AATTG-GATTTATCGATTGCC---TTCTTA---GTTC-TAAA-TTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTCGGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC] [+] EMBL AK070164 [GATAAGATAGGCACAGACCTGCCTATATTGTCACAATTTTTCTACAGAGCATAAAAGTTGGTGCAATGTGAATGCACGTGCAATCACTGACCAAACTACCAAACTCATGCTCCTTAGTAGTTCTATCTTCAGGTTGGGTGCAATAACTGATTAATTTATTTTGGTGATTTATTGTAATTAAGATTGAAGCTGTGACAAGAAGGATTTTGAGGATCACTTCAACTGACGGAGCAGCCAAAATACTTGTTTTTTCAAGCTGGAATGATGTTCTTGATGTGCTAGAGCACTCCCTTGCCGCTAACAATATCTCTTATGTTCGGATGAAAGGAGGAAGAAAATCGCAAACAGCGCTTGCCCAGTTCAAAGGTCTGGCAAGTAGTATAAGTGGAGAGAAAGCAAAGAAGTCATTTTCCAAGATGCAACCTGCTCAAGTATTGCTAATGCTTATCCAGCATGGTGCAAATGGTCTTAATCTTTTGGAAGCACAACATGTAATATTAGTGGAGCCGTTGTTAAACCCTGCAGCTGAGGCGCAAGCTATCAGCAGGATCCATAGAGTTGGGCAAGACAAAAGCACGTTTATCCACCGTTTTATTGTGAAGAATACTATTGAAGAGAGCATCTACAAATTAAACAGGGGCAGAGCTGTTTGCTCCACGATACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGTCTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCAGGTGGGCATATGAGAAGTTTACCTCCATCTGTTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAACTGGAACTCGGAGAGGCA ATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT AATTG GATTTATCGATTGCC TTCTTA GTTC TAAA TTATGTTAAAATTACAGAAGGTAGGGATATACTTTGGTCTGGAGCTTCTCGGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAA ] [-] EMBL CB635118 [ CGTTTTATTGTGAAGAATACTATTGAAGAGAGCATCTACAAATTAAACAGGGGCAGAGGTGTTTGCTCCACGATACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGTTTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCCGGTGGGCATATGAGAAGTTTACCTCCATTTGTTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTTTTTCAACTGGAACTTGGAGAGGCA ATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT AATTG GATTTATCGATTGCC TTTTTA GTTT TAAA TTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTTTGGAGCTTTTCGGATCATTATATTAGAATTTGGCATCAGTGATAGAATGTTTAGGACCCCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC] [+] EMBL BM038982 [ TATTCTTTCAACTGGAACTCGGAGA GCANATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT AATTG GATTTATCGATTGCC TTCTTA GTTC TAAA TTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTCGGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATC TTGTATAAAA ] [+] EMBL BQ908649 [ aAGTTGGAATTGTGAGT CCGATTGCCCCGTTCTTAGGTGTGCGTAAAGTTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTCGGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAA ] consensusID : consensus_8556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [TTGATTAGGTGAAGGACGAGACAAGGGGGATACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGTCTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCCGGTGGGCATATGAGAAGTTTACCTCCATCTGCTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAACTGGAACTCGGAGAGGCAATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTTAATTGGATTTATCGATTGCCTTCTTAGTTCTAAATTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTCCGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC] [-] EMBL CA761652 [TTGATTAGGTGAAGGACGAGACAAGGGGGATACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGTCTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCCGGTGGGCATATGAGAAGTTTACCTCCATCTGCTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAACTGGAACTCGGAGAGGCAATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTTAATTGGATTTATCGATTGCCTTCTTAGTTCTAAATTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTCCGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8556#0 GATAAGATAGGCACAGACCTGCCTATATTGTCACAATTTTTCTACAGAGCATAAAAGTTG 60 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 GTGCAATGTGAATGCACGTGCAATCACTGACCAAACTACCAAACTCATGCTCCTTAGTAG 120 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 TTCTATCTTCAGGTTGGGTGCAATAACTGATTAATTTATTTTGGTGATTTATTGTAATTA 180 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 AGATTGAAGCTGTGACAAGAAGGATTTTGAGGATCACTTCAACTGACGGAGCAGCCAAAA 240 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 TACTTGTTTTTTCAAGCTGGAATGATGTTCTTGATGTGCTAGAGCACTCCCTTGCCGCTA 300 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 ACAATATCTCTTATGTTCGGATGAAAGGAGGAAGAAAATCGCAAACAGCGCTTGCCCAGT 360 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 TCAAAGGTCTGGCAAGTAGTATAAGTGGAGAGAAAGCAAAGAAGTCATTTTCCAAGATGC 420 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 AACCTGCTCAAGTATTGCTAATGCTTATCCAGCATGGTGCAAATGGTCTTAATCTTTTGG 480 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 AAGCACAACATGTAATATTAGTGGAGCCGTTGTTAAACCCTGCAGCTGAGGCGCAAGCTA 540 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 TCAGCAGGATCCATAGAGTTGGGCAAGACAAAAGCACGTTTATCCACCGTTTTATTGTGA 600 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 AGAATACTATTGAAGAGAGCATCTACAAATTAAACAGGGGCAGAGCTGTTTGCTCCACGA 660 consensus_8556#1 -----------------------------TTGATTAGGTGAAGGACGAGACAAGGGG-GA 30 ** * *** * ** * ** consensus_8556#0 TACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGT 720 consensus_8556#1 TACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGT 90 ************************************************************ consensus_8556#0 CTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTG 780 consensus_8556#1 CTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTG 150 ************************************************************ consensus_8556#0 GGGCAGGTGGGCATATGAGAAGTTTACCTCCATCTGTTGCAGCTGGCTTAGCTGCTGAAA 840 consensus_8556#1 GGGCCGGTGGGCATATGAGAAGTTTACCTCCATCTGCTGCAGCTGGCTTAGCTGCTGAAA 210 **** ******************************* *********************** consensus_8556#0 GGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAA 900 consensus_8556#1 GGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAA 270 ************************************************************ consensus_8556#0 CTGGAACTCGGAGAGGCAATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT 960 consensus_8556#1 CTGGAACTCGGAGAGGCAATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT 330 ************************************************************ consensus_8556#0 AATTGGATTTATCGATTGCCTTCTTAGTTCTAAATTATGTTAAAATTACAGAAGGTAGGG 1020 consensus_8556#1 AATTGGATTTATCGATTGCCTTCTTAGTTCTAAATTATGTTAAAATTACAGAAGGTAGGG 390 ************************************************************ consensus_8556#0 ATATACTATGGTCTGGAGCTTCTCGGATCATTATATTAGAATCTGGCATCAGTGATAGAA 1080 consensus_8556#1 ATATACTATGGTCTGGAGCTTCTCCGATCATTATATTAGAATCTGGCATCAGTGATAGAA 450 ************************ *********************************** consensus_8556#0 TGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTA 1140 consensus_8556#1 TGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTA 510 ************************************************************ consensus_8556#0 GTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC 1178 consensus_8556#1 GTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC 548 ************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||