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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1992 fasta sequence
[TCTCGCTGACGAGGCTGGAGCTGGACGAGAGGTACAAGGAGAACGTGATACTGAAGAAGATCAAGGTGGGGACGGCGGGGGCGAAGGAGTGCGGCGACTACGAGGAGTGGTTCAACTACCGGGTGGCAAGGGCGGCGCCGGAGTCGTGCGCCGAGTTCCTCGGCAGCTTCGTCGCCGACAAGACCAAGTCCGAGTTCGTCAAGGGCGGCAAATGGCTCGTCTGGAAATTCGAGGGTGACCGGACGCTGGGCAACTACATGAGCGACCGCAACTTCCCCTTCAACCTGGAGGGCCTCATGTTCGGGCGCGCCGTGCGGGGGCTCGACGACGGCAGCCGCGCCGCGCTGGTGGTGAAGCAGGTGATGCGGCAGCTGGTGACCTCCCTGAAGCGCATCCACGGCACCGGCATCGTCCACCGCGACATCAAGCCGTCCAACCTCGTCGTCACCCGGCGGGGGCAGGTGAAGCTCATCGACTTCGGCGCCGCCACCGACCTCCGCATCGGCAAGAACTACGTCCCCGACCGCGCCCTCCTCGACCCGGACTACTGCCCGCCTGAGCTCTACGTCCTCCCCGAGGAGACGCCCCAGCCGCCCGCCGAGCCCATCGCCGCCATCCTCTCCCCGATCCTCTGGCAGATTAACAGCCCGGACCTGTTCGACATGTACTCGGCGGGGATCGTGCTGATGCAGATGGCGTCGCCGATGCTGAGGTCGCCGTCGGGGCTCAAGAACTTCAACGCCGAGCTTCAGGCCGCCGGGTACGACCTCAACCGGTGGCGGGAGACCACGCGGCGGAGACCCGACCTGCAGATCCTCGACCTCGACTCCGGCAGGGGGTGGGACCTCGCCACCAAGCTCATCTCGCAGCGCGGCGCCGACAAGCGCGGCCGCCTCACCGCCGCCGCCGCCCTGCGCCACCCTTACTTCCTCCTCGGCGGCGACCAGGCCGCCGCCGTCTTGTCCAAGCTGTCACTCAGCAAGTAGGTTATACAAAACAACTCAATGCACAAAATTAAGAACACATGCAGTGATCAGGTCACCACTCACCAATGGCATTAGCATTTTTGTTTATGATCCATTGGAGAGATCAAGAACTCAAGATTGATCCAAGAGAGAGGGAAAAGGAGGAGGAAGAAACAATATGGTAATATATAATTACATTGTTTTGTATGAGGTTAATCACTTTGAACAGTGCGGTGCAGAGTTTGCAGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAACTCTACTGAGAAATCCCTACTTCTGTTGGTCAGCTTCTTGCAACCTATGTAGATTTCTGAACTGTTTCTTCAGCCAATCCAGTACTTTGATTCGACAGAGAGCTCATTCTACTGATTTGGCTCACCAATTTCTTAATTAGACAGCAAACCAAAAAAAAATGCTTATACATCATCATATAACTTTGGCCGGTTAAGCTGTTCGAACTTTTCCTGAAGATCTTCATGGTTGCCTCCAACAAGCTTATCAATCTCCTCATTGTTTTTCATGAAGATGAACGTTGGGGTTGCACGCACATCGTATTGCGTCACCAGCTCCGGCATTTCGTCTACATCCACGGACACGAAAACAATGTCAGGATACTTCAGTGAAAGTTCAGCGAATAGAGGGGCAGCATTCCTACACGGAGTGCACCAAATTGCACTGAATTTTAGCACAACTGTTTTGCCATGCTCAGCTACTTCTTCCATTGTATTGTCCCAATTCTTTTGATCAGTTACCAAAGTCACATTTCCGCCACTGTAGTCCAGGTGCTCCTCGGCGTCTACAGTGCTGCTGCCACAGCAACCCATCGACTTGAGAAAATTCGTCAAGATGCAAGTGTCCTCTGCTCCACTCTGCAAGAGCAAAAGGGCAAGAAAAGTTTGGCTCGCCGTCTGCTTGGTTCTGCGCCGAGCACGTCGGCCGTGCGTCGACGGCGGCGGCGGCGGCCCCCGGCGGAGGGGTGGGTGGCACGG]
[+] EMBL CB652420 [TCTCGCTGACGAGGCTGGAGCTGGACGAGAGGTACAAGGAGAACGTGATACTGAAGAAGATCAAGGTGGGGACGGCGGGGGCGAAGGAGTGCGGCGACTACGAGGAGTGGTTCAACTACCGGGTGGCAAGGGCGGCGCCGGAGTCGTGCGCCGAGTTCCTCGGCAGCTTCGTCGCCGACAAGACCAAGTCCGAGTTCGTCAAGGGCGGCAAATGGCTCGTCTGGAAATTCGAGGGTGACCGGACGCTGGGCAACTACATGAGCGACCGCAACTTCCCCTTCAACCTGGAGGGCCTCATGTTCGGGCGCGCCGTGCGGGGGCTCGACGACGGCAGCCGCGCCGCGCTGGTGGTGAAGCAGGTGATGCGGCAGCTGGTGACCTCCCTGAAGCGCATCCACGGCACCGGCATCGTCCACCGCGACATCAAGCCGTCCAACCTCGTCGTCACCCGGCGGGGGCAGGTGAAGCTCATCGACTTCGGCGCCGCCACCGACCTCCGCATCGGCAAGAACTACGTCCCCGACCGCGCCCTCCTCGACCCGGACTACTGCCCGCCTGAGCTCTACGTCCTCCCCGAGGAGACGCCCCAGCCGCCCGCCGAGCCCATCGCCGCCATCCTCTCCCCGATCCTCTGGCAGATTAACAGCCCGGACCTGTTCGACATGTACTCGGCGGGGATCGTGCTGATGCAGATGGCGTCGCCGATGCTGAGGTCGCCGTCGGGGCTCAAGAACTTCAACGCCGAGCTTCAGGCCGCCGG ]
[+] EMBL AK061052 [ AGAGGTACAAGGAGAAGGTGATACTGAAGAAGATCAAGGTGGGGACGGCGGGGGCGAAGGAGTGCGGCGACTACGAGGAGTGGTTCAACTACCGGGTGGCAAGGGCGGCGCCGGAGTCGTGCGCCGAGTTCCTCGGCAGCTTCGTCGCCGACAAGACCAAGTCCGAGTTCGTCAAGGGCGGCAAATGGCTCGTCTGGAAATTCGAGGGTGACCGGACGCTGGGCAACTACATGAGCGACCGCAACTTCCCCTTCAACCTGGAGGGCCTCATGTTCGGGCGCGCCGTGCGGGGGCTCGACGACGGCAGCCGCGCCGCGCTGGTGGTGAAGCAGGTGATGCGGCAGCTGGTGACCTCCCTGAAGCGCATCCACGGCACCGGCATCGTCCACCGCGACATCAAGCCGTCCAACCTCGTCGTCACCCGGCGGGGGCAGGTGAAGCTCATCGACTTCGGCGCCGCCACCGACCTCCGCATCGGCAAGAACTACGTCCCCGACCGCGCCCTCCTCGACCCGGACTACTGCCCGCCTGAGCTCTACGTCCTCCCCGAGGAGACGCCCCAGCCGCCCGCCGAGCCCATCGCCGCCATCCTCTCCCCGATCCTCTGGCAGATTAACAGCCCGGACCTGTTCGACATGTACTCGGCGGGGATCGTGCTGATGCAGATGGCGTCGCCGATGCTGAGGTCGCCGTCGGGGCTCAAGAACTTCAACGCCGAGCTCAAGGCCGCCGGGTACGACCTCAACCGGTGGCGGGAGACCACGCGGCGGAGACCCGACCTGCAGATCCTCGACCTCGACTCCGGCAGGGGGTGGGACCTCGCCACCAAGCTCATCTCGCAGCGCGGCGCCGACAAGCGCGGCCGCCTCACCGCCGCCGCCGCCCTGCGCCACCCTTACTTCCTCCTCGGCGGCGACCAGGCCGCCGCCGTCTTGTCCAAGCTGTCACTCAGCAAGTAGGTTATACAAAACAACTCAATGCACAAAATTAAGAACACATGCAGTGATCAGGTCACCACTCACCAATGGCATTAGCATTTTTGTTTATGATCCATTGGAGAGATCAAGAACTCAAGATTGATCCAAGAGAGAGGGAAAAGGAGGAGGAAGAAACAATATGGTAATATATAATTACATTGTTTTGTATGAGGTTAATCACTTTGAACAGTGCGGTGCAGAGTTTGCAGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAACTCTACTGAGAAATCCCTACTTCTGTTGGTCAGCTTCTTGCAACCTATGTAGATTTCTGAACTGT ]
[+] EMBL AA753145 [ AAAAGGAAGAAGAA NAACAATATGGTAATATATAATTACATTGTTTTGTATGANGTTAATCACTTTGANCAGTGCGGTGCACAGTTTGCAGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAACTCTACTGAGAAATCCCTACTTCTGTTGGTCAGCTTCTaaaaa ]
[-] EMBL AK071198 [ AATTACATTGTTTTGTATGAGGTTAATCACTTTGAACAGTGCGGTGCAGAGTTTGCAGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAACTCTACTGAGAAATCCCTACTTCTGTTGGTCAGCTTCTTGCAACCTATGTAGATTTCTGAACTGTTTCTTCAGCCAATCCAGTACTTTGATTCGACAGAGAGCTCATTCTACTGATTTGGCTCACCAATTTCTTAATTAGACAGCAAACCAAAAAAAAATGCTTATACATCATCATATAACTTTGGCCGGTTAAGCTGTTCGAACTTTTCCTGAAGATCTTCATGGTTGCCTCCAACAAGCTTATCAATCTCCTCATTGTTTTTCATGAAGATGAACGTTGGGGTTGCACGCACATCGTATTGCGTCACCAGCTCCGGCATTTCGTCTACATCCACGGACACGAAAACAATGTCAGGATACTTCAGTGAAAGTTCAGCGAATAGAGGGGCAGCATTCCTACACGGAGTGCACCAAATTGCACTGAATTTTAGCACAACTGTTTTGCCATGCTCAGCTACTTCTTCCATTGTATTGTCCCAATTCTTTTGATCAGTTACCAAAGTCACATTTCCGCCACTGTAGTCCAGGTGCTCCTCGGCGTCTACAGTGCTGCTGCCACAGCAACCCATCGACTTGAGAAAATTCGTCAAGATGCAAGTGTCCTCTGCTCCACTCTGCAAGAGCAAAAGGGCAAGAAAAGTTTGGCTCGCCGTCTGCTTGGTTCTGCGCCGAGCACGTCGGCCGTGCGTCGACGGCGGCGGCGGCGGCCCCCGGCGGAGGGGTGGGTGGCACGG]
consensusID : consensus_8557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[GGTGGGTGAAACAAGGTTGATGCGGCANCTGGTGAACTCCCTGAANCGCATCCACGGCACCGGCATCGTCCACCGCGACATCAANCCGTCCAACCTCGTCNTCNCCCGGCGGGGGCAGGTNAAACTCATCCANTTCCGCGCCGCCACCGAACTCCGCATCGGCAAAAANTACNTCCCNANCGCCCCTCCTCGANCCGGANTACTGCCCGCCTGAACTCTACNTCCTCCCCCAAGAAAANCCCCANCCGCCCNCCNAACCCATCNCCCCATCCTCTCCCCNATCCTC]
[+] EMBL BE228588 [GGTGGGTGAAACAAGGTTGATGCGGCANCTGGTGAACTCCCTGAANCGCATCCACGGCACCGGCATCGTCCACCGCGACATCAANCCGTCCAACCTCGTCNTCNCCCGGCGGGGGCAGGTNAAACTCATCCANTTCCGCGCCGCCACCGAACTCCGCATCGGCAAAAANTACNTCCCNANCGCCCCTCCTCGANCCGGANTACTGCCCGCCTGAACTCTACNTCCTCCCCCAAGAAAANCCCCANCCGCCCNCCNAACCCATCNCCCCATCCTCTCCCCNATCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8557#0 TCTCGCTGACGAGGCTGGAGCTGGACGAGAGGTACAAGGAGAACGTGATACTGAAGAAGA 60
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 TCAAGGTGGGGACGGCGGGGGCGAAGGAGTGCGGCGACTACGAGGAGTGGTTCAACTACC 120
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 GGGTGGCAAGGGCGGCGCCGGAGTCGTGCGCCGAGTTCCTCGGCAGCTTCGTCGCCGACA 180
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 AGACCAAGTCCGAGTTCGTCAAGGGCGGCAAATGGCTCGTCTGGAAATTCGAGGGTGACC 240
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 GGACGCTGGGCAACTACATGAGCGACCGCAACTTCCCCTTCAACCTGGAGGGCCTCATGT 300
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 TCGGGCGCGCCGTGCGGGGGCTCGACGACGGCAGCCGCGCCGCGCTGGTGG-TGAAGCAG 359
consensus_8557#1 ----------------------------------------------GGTGGGTGAAACAA 14
***** **** **
consensus_8557#0 G--TGATGCGGCAGCTGGTGACCTCCCTGAAGCGCATCCACGGCACCGGCATCGTCCACC 417
consensus_8557#1 GGTTGATGCGGCANCTGGTGAACTCCCTGAANCGCATCCACGGCACCGGCATCGTCCACC 74
* ********** ******* ********* ****************************
consensus_8557#0 GCGACATCAAGCCGTCCAACCTCGTCGTCACCCGGCGGGGGCAGGTGAAGCTCATCGACT 477
consensus_8557#1 GCGACATCAANCCGTCCAACCTCGTCNTCNCCCGGCGGGGGCAGGTNAAACTCATCCANT 134
********** *************** ** **************** ** ****** * *
consensus_8557#0 TCGGCGCCGCCACCGACCTCCGCATCGGCAAGAACTACGTCCCCGACCGCGCCCTCCTCG 537
consensus_8557#1 TCCGCGCCGCCACCGAACTCCGCATCGGCAAAAANTACNTCCCN-ANCGC-CCCTCCTCG 192
** ************* ************** ** *** **** * *** *********
consensus_8557#0 ACCCGGACTACTGCCCGCCTGAGCTCTACGTCCTCCCCGAGGAGACGCCCCAGCCGCCCG 597
consensus_8557#1 ANCCGGANTACTGCCCGCCTGAACTCTACNTCCTCCCCCAAGAAAANCCCCANCCGCCCN 252
* ***** ************** ****** ******** * ** * ***** ******
consensus_8557#0 CCGAGCCCATCGCCGCCATCCTCTCCCCGATCCTCTGGCAGATTAACAGCCCGGACCTGT 657
consensus_8557#1 CCNAACCCATCNCC-CCATCCTCTCCCCNATCCTC------------------------- 286
** * ****** ** ************* ******
consensus_8557#0 TCGACATGTACTCGGCGGGGATCGTGCTGATGCAGATGGCGTCGCCGATGCTGAGGTCGC 717
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 CGTCGGGGCTCAAGAACTTCAACGCCGAGCTTCAGGCCGCCGGGTACGACCTCAACCGGT 777
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 GGCGGGAGACCACGCGGCGGAGACCCGACCTGCAGATCCTCGACCTCGACTCCGGCAGGG 837
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 GGTGGGACCTCGCCACCAAGCTCATCTCGCAGCGCGGCGCCGACAAGCGCGGCCGCCTCA 897
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 CCGCCGCCGCCGCCCTGCGCCACCCTTACTTCCTCCTCGGCGGCGACCAGGCCGCCGCCG 957
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 TCTTGTCCAAGCTGTCACTCAGCAAGTAGGTTATACAAAACAACTCAATGCACAAAATTA 1017
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 AGAACACATGCAGTGATCAGGTCACCACTCACCAATGGCATTAGCATTTTTGTTTATGAT 1077
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 CCATTGGAGAGATCAAGAACTCAAGATTGATCCAAGAGAGAGGGAAAAGGAGGAGGAAGA 1137
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 AACAATATGGTAATATATAATTACATTGTTTTGTATGAGGTTAATCACTTTGAACAGTGC 1197
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 GGTGCAGAGTTTGCAGACACTAGCTAACTTAACTTAATTACTGCCCGTATTCGGACTGAA 1257
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 CTCTACTGAGAAATCCCTACTTCTGTTGGTCAGCTTCTTGCAACCTATGTAGATTTCTGA 1317
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 ACTGTTTCTTCAGCCAATCCAGTACTTTGATTCGACAGAGAGCTCATTCTACTGATTTGG 1377
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 CTCACCAATTTCTTAATTAGACAGCAAACCAAAAAAAAATGCTTATACATCATCATATAA 1437
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 CTTTGGCCGGTTAAGCTGTTCGAACTTTTCCTGAAGATCTTCATGGTTGCCTCCAACAAG 1497
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 CTTATCAATCTCCTCATTGTTTTTCATGAAGATGAACGTTGGGGTTGCACGCACATCGTA 1557
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 TTGCGTCACCAGCTCCGGCATTTCGTCTACATCCACGGACACGAAAACAATGTCAGGATA 1617
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 CTTCAGTGAAAGTTCAGCGAATAGAGGGGCAGCATTCCTACACGGAGTGCACCAAATTGC 1677
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 ACTGAATTTTAGCACAACTGTTTTGCCATGCTCAGCTACTTCTTCCATTGTATTGTCCCA 1737
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 ATTCTTTTGATCAGTTACCAAAGTCACATTTCCGCCACTGTAGTCCAGGTGCTCCTCGGC 1797
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 GTCTACAGTGCTGCTGCCACAGCAACCCATCGACTTGAGAAAATTCGTCAAGATGCAAGT 1857
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 GTCCTCTGCTCCACTCTGCAAGAGCAAAAGGGCAAGAAAAGTTTGGCTCGCCGTCTGCTT 1917
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 GGTTCTGCGCCGAGCACGTCGGCCGTGCGTCGACGGCGGCGGCGGCGGCCCCCGGCGGAG 1977
consensus_8557#1 ------------------------------------------------------------
consensus_8557#0 GGGTGGGTGGCACGG 1992
consensus_8557#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||