cluster # 8559

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Oryza sativa
cluster # 8559 cluster # 8559 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8559#0 length = 423 sequences # 4

consensus_8559#1 length = 331 sequences # 1

consensusID : consensus_8559#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 423
fasta sequence

                              [TGTCTGGTGGTNGGTCTGGTGGCTCGCAAGCAGGATCACAGGNCGNAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGTGATCCTCTACTCCTGTTAACTTGGATATCNTGTTCCTCTAATTCTGTATGTNAATTGCNCTATCGACCTNGGTTTCAATTAAACGGCGGGGTCGTTAGTTNTNTNTTNAAAAAAA]

[+] EMBL D42895               [TGTCTGGTGGTNGGTCTGGTGGCTCGCAAGCAGGATCACAGGNCGNAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGTGATCCTCTACTCCTGTTAACTTGGATATC                                                                                      ]
[+] EMBL AU166962             [                               AGGATCACAGGGCGGAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGANAGGAACATGGGCAACNCNANCTGGGNGTGATCCTCTACTCCTGTTAACTTGGANATCNTGTTCCTCTAATTCTGTATGTNAATTGCNCTATCGACCTNGGTTTCAATTAAACGGCGGGGTCGTTAGTTNTNTNTTNAAAAAAA]
[+] EMBL CB680356             [                                                                     AGTATCCTGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCTAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGTGATCCTCTACTCCT                                                                                                     ]
[+] EMBL CB685445             [                                                                     AGTCTGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGTGATCCTCTACTCCT                                                                                                     ]




>consensus_8559#0
TGTCTGGTGGTNGGTCTGGTGGCTCGCAAGCAGGATCACAGGNCGNAGGTGACCAGGCTC
CTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGT
AGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGT
TCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATG
TACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAG
CTGGGCGTGATCCTCTACTCCTGTTAACTTGGATATCNTGTTCCTCTAATTCTGTATGTN
AATTGCNCTATCGACCTNGGTTTCAATTAAACGGCGGGGTCGTTAGTTNTNTNTTNAAAA
AAA

consensusID : consensus_8559#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [AGGATCACAGGGCGGAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTNTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGGTGATCCTCTACTCCTGTTAACTTGGATATCTTGTTCCTCTAAAAAAAAAAAAAA]

[+] EMBL AU181995             [AGGATCACAGGGCGGAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTNTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGGTGATCCTCTACTCCTGTTAACTTGGATATCTTGTTCCTCTAAAAAAAAAAAAAA]




>consensus_8559#1
AGGATCACAGGGCGGAGGTGACCAGGCTCCTGAGGCTGAGTATGAGGAGGTCAAGAAGTG
AAATTGACCGTTGCCCTGCATTTAGGAGTAGTAGTAGCTAATTTTGTAAGAACTTCGAGA
TGCTAGAGCTGTGCACGGTGTAATAATGTTCTGGGGATTTTGTTNTCCTATGACACGTCT
TCAATTCCCAAGGGCGTCCAATAGTGATGTACTCCTATAACTTTGGTTGCATGTGTTCCC
TTGCTCGAGAGGAACATGGGCAACACAAGCTGGGCGGTGATCCTCTACTCCTGTTAACTT
GGATATCTTGTTCCTCTAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8559#0      TGTCTGGTGGTNGGTCTGGTGGCTCGCAAGCAGGATCACAGGNCGNAGGTGACCAGGCTC 60
consensus_8559#1      -------------------------------AGGATCACAGGGCGGAGGTGACCAGGCTC 29
                                                     *********** ** **************

consensus_8559#0      CTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGT 120
consensus_8559#1      CTGAGGCTGAGTATGAGGAGGTCAAGAAGTGAAATTGACCGTTGCCCTGCATTTAGGAGT 89
                      ************************************************************

consensus_8559#0      AGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGT 180
consensus_8559#1      AGTAGTAGCTAATTTTGTAAGAACTTCGAGATGCTAGAGCTGTGCACGGTGTAATAATGT 149
                      ************************************************************

consensus_8559#0      TCTGGGGATTTTGTTCTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATG 240
consensus_8559#1      TCTGGGGATTTTGTTNTCCTATGACACGTCTTCAATTCCCAAGGGCGTCCAATAGTGATG 209
                      *************** ********************************************

consensus_8559#0      TACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAG 300
consensus_8559#1      TACTCCTATAACTTTGGTTGCATGTGTTCCCTTGCTCGAGAGGAACATGGGCAACACAAG 269
                      ************************************************************

consensus_8559#0      CTGGGCG-TGATCCTCTACTCCTGTTAACTTGGATATCNTGTTCCTCTAATTCTGTATGT 359
consensus_8559#1      CTGGGCGGTGATCCTCTACTCCTGTTAACTTGGATATCTTGTTCCTCTAAAAAAAAAAAA 329
                      ******* ****************************** ***********      *   

consensus_8559#0      NAATTGCNCTATCGACCTNGGTTTCAATTAAACGGCGGGGTCGTTAGTTNTNTNTTNAAA 419
consensus_8559#1      AA---------------------------------------------------------- 331
                       *                                                          

consensus_8559#0      AAAA 423
consensus_8559#1      ----