These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1211 fasta sequence [AGAAAGGGAAGAGAGTGGGTGAGACCGTGAGAGAGGGGGATGGAGATGGAGGCGTCCGCCGCCGAGGGCGGAGCCGCGGCGGCGGCGCGGACGCTGCGGTGGGCGGGGCGCGCGGGGCACCTCGGGGGATTCCCGCGCGCCGCGGTGATCGCCGCCGTCGGGGCGGTCGCCAAGGCGTACGCGTCGCTGCTCAACACCACCACCGTCCACAACGCCGATGCCCTCCTCCGCCTCGTCTCCTCGCGGCCCCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGACCCACTTATGTGGGGATTCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTGTTGACAGCAGAGGACATCTGCTTCAGGAATGTGTTCATGTCTTACATATTTCGACTTGGGAAATGTGTGCCGATCACACGAGGTGCTGGAATTTATCAGGATCATATGACTGAAGCCCTTGAAGTGCTTAGCACTGGAGACTGGGAAAAATAGCTCAAGATGATCAGCCAATCAGACGTCTGAAGTGGGGAACTGCCAATCTTATCGTCCGAGCACCAGTAACTCCAATTGTTTTGCCTATTGTGCATTCTGGCTTTGAAAAGGTCATGCCAGAGAAATCATTTTTTGGGCGTCGACCGCCAGTGCCTCTTTGGAACAAGGAGATACATATCATCGTTGGAGAGCCAGTGGAGTTTGATCTGCCAAGCTTGAAGCAGGCAGCAAGAACAGTACCTCAGGATTCATCTTTTGAAAGGAAGGGTTGGCCAAGCATCATGCCAGACGGACTAGATGAAGCGGCTCAGAGATGGCTTTACCAGAAGATATCAGATAAGATCCAATCAGTTATGGAGACATTGCGGAAGAGACTTCTCGACCTGAAGCAACATTGATATTTGGCTGTTTACTTGCAATCCAAGGAGGCACCTCCTTTTTTTGAACAATACCTTCTTGAAATGGTAGAATATATAGCTTCATTGAACAGTTTCAGATGATGCAAAGACGATTGAGAGTAGGCAGTGGACGCTACGTCTGTTGGGGTGAAAATTTGAGACGACGGTGAGAGATAGAACTCAGCATGTTAGATTACGAGGCATTTCTTTTTCAGTAGGTCAAGAATATTTGTCAAGCGCCTACTTTTCTTTTTATTGTTTGGAATGGTTTGCCATGTTTACGAGGCATGAATAAAGTCA] [+] EMBL AK069874 [AGAAAGGGAAGAGAGTGGGTGAGACCGTGAGAGAGGGGGATGGAGATGGAGGCGTCCGCCGCCGAGGGCGGAGCCGCGGCGGCGGCGCGGACGCTGCGGTGGGCGGGGCGCGCGGGGCACCTCGGGGGATTCCCGCGCGCCGCGGTGATCGCCGCCGTCGGGGCGGTCGCCAAGGCGTACGCGTCGCTGCTCAACACCACCACCGTCCACAACGCCGATGCCCTCCTCCGCCTCGTCTCCTCGCGGCCCCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGACCCACTTATGTGGGGATTCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTGTTGACAGCAGAGGACATCTGCTTCAGGAATGTGTTCATGTCTTACATATTTCGACTTGGGAAATGTGTGCCGATCACACGAGGTGCTGGAATTTATCAGGATCATATGACTGAAGCCCTTGAAGTGCTTAGCACTGGAGACTGGGAAAAATAGCTCAAGATGATCAGCCAATCAGACGTCTGAAGTGGGGAACTGCCAATCTTATCGTCCGAGCACCAGTAACTCCAATTGTTTTGCCTATTGTGCATTCTGGCTTTGAAAAGGTCATGCCAGAGAAATCATTTTTTGGGCGTCGACCGCCAGTGCCTCTTTGGAACAAGGAGATACATATCATCGTTGGAGAGCCAGTGGAGTTTGATCTGCCAAGCTTGAAGCAGGCAGCAAGAACAGTACCTCAGGATTCATCTTTTGAAAGGAAGGGTTGGCCAAGCATCATGCCAGACGGACTAGATGAAGCGGCTCAGAGATGGCTTTACCAGAAGATATCAGATAAGATCCAATCAGTTATGGAGACATTGCGGAAGAGACTTCTCGACCTGAAGCAACATTGATATTTGGCTGTTTACTTGCAATCCAAGGAGGCACCTCCTTTTTTTGAACAATACCTTCTTGAAATGGTAGAATATATAGCTTCATTGAACAGTTTCAGATGATGCAAAGACGATTGAGAGTAGGCAGTGGACGCTACATCTGTTGAGGTGAAAATTTGAGACGACGGTGAGAGATAGAACTCAGCATGTTAGATTACGAGGCATTTCTTTTTCAGTAGGTCAAGAATATTTGTCAAGCGCCTACTTTTCTTTTTATTGTTTGGAATGGTTTGCCATGTTTACGAGGCATGAATAAAGTCA] [-] EMBL BI305706 [ AGTAGGCTGTGGACGCTACGTCTGTTGGGGTGAAAATTTGAGACGACGGTGAGAGATAGAACTCAGCATGTTAGATTACGAGGCATTTCTTTTTCAGTAGGTCAAGAATATTTGTCAAGCGCCTACTaaa ] [-] EMBL CB965185 [ TGGACGCTACGTCTGTTGGGGTGAAAATTTGAGACGACGGTGAGAGATAGAACTCAGCATGTTAGATTACGAGGCATTTCTTTTTCAGTAGGTCAAGAATA TTGTCAg ] consensusID : consensus_8560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 842 fasta sequence [ACACCACCACCGTCCACAACGCTGATGCCCTCCTCCGCCTCGTCTCCTCGCGGCCCCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGACCCACTTATGTGGGGATGCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTGTTGACAGCAGAGGACATCTGCTTCAGGAATGTGTCCATGTCTTACATATCCTCGACTGGGGAAATGTGTGCCGATCACACGAGGTGCTGGAATGAATCAGGATCATATGACTGAAGCCCTGGAAGTGCTTAGCACTGGAGACTGGGAAAAATACCTCAGGATGATCAGCCAATCAGACGTCTGAAGTGGGGAACTGCCATTCTTATCGTCCGAGCACCATTAACTCCATTGGTTTTGCCTATGGTGCATCCTGGCTTCAAAAAGGTCTTGCCAGAGAAATCCTTTTTTGGGGCTTTAACCCCCAAGTTCATCTTTTGGAACCGGGGAGATTCTTTTTTATCGTGGGACAACCCGTTGGATTTTGATCCTGCCATCCATAAACCGGCCTCCATACACTATACCTTGGGATCGTTCTTTTTAAAGGAATGGTTGGCCCACCTTTCGTGCGCAACTGCAAAAATTTACTAGGCAAAATGTGCTTGACTAAATAGTTCTGATGCATCCAATGCGTTTGGAGAAGTCCCGAACGATTGTCGACTCTCCTANCTTGTATTCGTATATCCCCACCTACTAGACAGCACCTAGTGTGAACGCTCTTTCAAACCGTAGTTTCCGCCGTNAGCACCCGACGCGACACTAGCACCCCACGCACACTTGCAGCATCCCGCTCAGAGC] [+] EMBL CA753372 [ACACCACCACCGTCCACAACGCTGATGCCCTCCTCCGCCTCGTCTCCTCGCGGCCCCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGACCCACTTATGTGGGGATGCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTGTTGACAGCAGAGGACATCTGCTTCAGGAATGTGTCCATGTCTTACATATCCTCGACTGGGGAAATGTGTGCCGATCACACGAGGTGCTGGAATGAATCAGGATCATATGACTGAAGCCCTGGAAGTGCTTAGCACTGGAGACTGGGAAAAATACCTCAGGATGATCAGCCAATCAGACGTCTGAAGTGGGGAACTGCCATTCTTATCGTCCGAGCACCATTAACTCCATTGGTTTTGCCTATGGTGCATCCTGGCTTCAAAAAGGTCTTGCCAGAGAAATCCTTTTTTGGGGCTTTAACCCCCAAGTTCATCTTTTGGAACCGGGGAGATTCTTTTTTATCGTGGGACAACCCGTTGGATTTTGATCCTGCCATCCATAAACCGGCCTCCATACACTATACCTTGGGATCGTTCTTTTTAAAGGAATGGTTGGCCCACCTTTCGTGCGCAACTGCAAAAATTTACTAGGCAAAATGTGCTTGACTAAATAGTTCTGATGCATCCAATGCGTTTGGAGAAGTCCCGAACGATTGTCGACTCTCCTANCTTGTATTCGTATATCCCCACCTACTAGACAGCACCTAGTGTGAACGCTCTTTCAAACCGTAGTTTCCGCCGTNAGCACCCGACGCGACACTAGCACCCCACGCACACTTGCAGCATCCCGCTCAGAGC] consensusID : consensus_8560#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [TATTCAGATAAGATCCAATCAGGTTATGGAGNCATTGCGGAAAGAGACTTCTCGACCCTGAAGCCANCCATTGATATTTTGGCTGTTTNCTTGCAATCCCAAGGAGGGCNCCTCCTTTTTTTTGAANCAAATCCCTTCTTTGAAATGGTAGAATATATAGCTTTCATTGANCAGGTTTCAGATGATGCAAAAGCCGATTGAGAGGTAGGCAGTGGGCCGCTACATCTGTTGAGGGTGAAAAATTTGAGACGACGGGTGAGAGATAGAACTCAGCATGTTTAGATTACGAGGCATTTCTTTTTTCAGTAGGCCAAGAATATTTTGTCAAGCGCCTACTTTTCTTTTTATTGTTGGAATGGTTTGCCATGTTTACGAGGCATGAATAAAGTCATCGCCTATTCAACTTGTTAGATGTTCTAAAAAAAAAAA] [+] EMBL AU166963 [TATTCAGATAAGATCCAATCAGGTTATGGAGNCATTGCGGAAAGAGACTTCTCGACCCTGAAGCCANCCATTGATATTTTGGCTGTTTNCTTGCAATCCCAAGGAGGGCNCCTCCTTTTTTTTGAANCAAATCCCTTCTTTGAAATGGTAGAATATATAGCTTTCATTGANCAGGTTTCAGATGATGCAAAAGCCGATTGAGAGGTAGGCAGTGGGCCGCTACATCTGTTGAGGGTGAAAAATTTGAGACGACGGGTGAGAGATAGAACTCAGCATGTTTAGATTACGAGGCATTTCTTTTTTCAGTAGGCCAAGAATATTTTGTCAAGCGCCTACTTTTCTTTTTATTGTTGGAATGGTTTGCCATGTTTACGAGGCATGAATAAAGTCATCGCCTATTCAACTTGTTAGATGTTCTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8560#0 AGAAAGGGAAGAGAGTGGGTGAGACCGTGAGAGAGGGGGATGGAGATGGAGGCGTCCGCC 60 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 GCCGAGGGCGGAGCCGCGGCGGCGGCGCGGACGCTGCGGTGGGCGGGGCGCGCGGGGCAC 120 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 CTCGGGGGATTCCCGCGCGCCGCGGTGATCGCCGCCGTCGGGGCGGTCGCCAAGGCGTAC 180 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 GCGTCGCTGCTCAACACCACCACCGTCCACAACGCCGATGCCCTCCTCCGCCTCGTCTCC 240 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 TCGCGGCCCCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGAC 300 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 CCACTTATGTGGGGATTCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTG 360 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 TTGACAGCAGAGGACATCTGCTTCAGGAATGTGTTCATGTCTTACATATTTCGACTTGGG 420 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 AAATGTGTGCCGATCACACGAGGTGCTGGAATTTATCAGGATCATATGACTGAAGCCCTT 480 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 GAAGTGCTTAGCACTGGAGACTGGGAAAAATAGCTCAAGATGATCAGCCAATCAGACGTC 540 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 TGAAGTGGGGAACTGCCAATCTTATCGTCCGAGCACCAGTAACTCCAATTGTTTTGCCTA 600 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 ------------------------------------------------------------ consensus_8560#0 TTGTGCATTCTGGCTTTGAAAAGGTCATGCCAGAGAAATCATTTTTTGGGCGTCGACCGC 660 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 -----ACACCACCACCGTCCACAACGCTGATGCCCTCCTCCGCCTCGTCTCCTCGCGGCC 55 consensus_8560#0 CAGTGCCTCTTTGGAACAAGGAGATACATATCATCGTTGGAGAGCCAGTGGAGTTTGATC 720 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 CCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGACCCACTTAT 115 consensus_8560#0 TGCCAAGCTTGAAGCAGGCAGCAAGAACAGTACCTCAGGATTCATCTTTTGAAAGGAAGG 780 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 GTGGGGATGCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTGTTGACAGC 175 consensus_8560#0 GTTGGCCAAGCATCATGCCAGACGGACTAGATGAAGCGGCTCAGAGATGGCTTTACCAGA 840 consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 AGAGGACATCTGCTTCAGGAATGTGTCCATGTCTTACATATCCTCGACTGGGGAAATGTG 235 consensus_8560#0 AGATAT-CAGATAAGATCC--AATCAG-TTATGGAGACATTGCGGAA-----GAGACTTC 891 consensus_8560#2 ---TATTCAGATAAGATCC--AATCAGGTTATGGAGNCATTGCGGAAA----GAGACTTC 51 consensus_8560#1 TGCCGATCACACGAGGTGCTGGAATGAATCAGGATCATATGACTGAAGCCCTGGAAGTGC 295 ** * ** * * * * * * ** * *** * * * * consensus_8560#0 TCGACC-TGAAGCAAC--ATTGATATTT-GG------CTGTTTACTTGCAATCC--AAGG 939 consensus_8560#2 TCGACCCTGAAGCCANCCATTGATATTTTGG------CTGTTTNCTTGCAATCCCAAGGA 105 consensus_8560#1 TTAGCACTGGAGACTGGGAAAAATACCTCAGGATGATCAGCCAATCAGACGTCTGAAGTG 355 * * ** ** * *** * * * * * ** * consensus_8560#0 AGGCACCTCCTTTTTTT-GAAC--AATACC------TTCTT-GAAATGGTAGAATATATA 989 consensus_8560#2 GGGCNCCTCCTTTTTTTTGAANCAAATCCC------TTCTTTGAAATGGTAGAATATATA 159 consensus_8560#1 GGGAACTGCCATTCTTATCGTCCGAGCACCATTAACTCCATTGGTTTTGCCTATGGTGCA 415 ** * ** ** ** * ** * * * * * * * * * consensus_8560#0 GCTT-CATTGAACAG-TTTCAGATGATGCAAAGAC-GATTGAGAG-TAGGCAGTGGAC-G 1044 consensus_8560#2 GCTTTCATTGANCAGGTTTCAGATGATGCAAAAGCCGATTGAGAGGTAGGCAGTGGGCCG 219 consensus_8560#1 TCCTGGCTTCAAAAAGGTCTTGCCAGAGAAATCCTTTTTTGGGGCTTTAACCCCCAAGTT 475 * * ** * * * * * ** *** * * * consensus_8560#0 CTACGTCTGTTG-GGGTGAAAA-TTT---------GAGACGACGG-TGAGAGATAGAACT 1092 consensus_8560#2 CTACATCTGTTGAGGGTGAAAAATTT---------GAGACGACGGGTGAGAGATAGAACT 270 consensus_8560#1 CATCTTTTGGAACCGGGGAGATTCTTTTTTATCGTGGGACAACCCGTTGGATTTTGATCC 535 * * * ** ** ** * ** * *** ** * ** * ** * consensus_8560#0 CAGCATGTT-AGATTACGAGGCATTTCTTTTT-CAGTAGGTCAAGAATATTT-GTCAAGC 1149 consensus_8560#2 CAGCATGTTTAGATTACGAGGCATTTCTTTTTTCAGTAGGCCAAGAATATTTTGTCAAGC 330 consensus_8560#1 TGCCATCCATAAACCGGCCTCCATACACTATA-CCTTGGGATCGTTCTTTTTAAAGGAAT 594 *** * * *** * * * * ** * *** * consensus_8560#0 GCCTACTTTTCTTTTTAT---TGTTTGGAATGGTTTGCCATGTTTACGAGGCATGAATAA 1206 consensus_8560#2 GCCTACTTTTCTTTTTAT---TGTT-GGAATGGTTTGCCATGTTTACGAGGCATGAATAA 386 consensus_8560#1 GGTTGGCCCACCTTTCGTGCGCAACTGCAAAAATTTACTAGGCAAAATGTGCTTGACTAA 654 * * * *** * * ** *** * * * * ** *** *** consensus_8560#0 A--GTCA----------------------------------------------------- 1211 consensus_8560#2 A--GTCATCGCCTATTCAACTTGTT---AGATGTTCTAAAAAAAAAAA------------ 429 consensus_8560#1 ATAGTTCTGATGCATCCAATGCGTTTGGAGAAGTCCCGAACGATTGTCGACTCTCCTANC 714 * ** consensus_8560#0 ------------------------------------------------------------ consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 TTGTATTCGTATATCCCCACCTACTAGACAGCACCTAGTGTGAACGCTCTTTCAAACCGT 774 consensus_8560#0 ------------------------------------------------------------ consensus_8560#2 ------------------------------------------------------------ consensus_8560#1 AGTTTCCGCCGTNAGCACCCGACGCGACACTAGCACCCCACGCACACTTGCAGCATCCCG 834 consensus_8560#0 -------- consensus_8560#2 -------- consensus_8560#1 CTCAGAGC 842 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||