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Oryza sativa
cluster # 8562 cluster # 8562       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8562#0 length = 1039 sequences # 2  
consensus_8562#1 length = 296 sequences # 1  
consensus_8562#2 length = 290 sequences # 1  
consensus_8562#3 length = 192 sequences # 1  

consensusID : consensus_8562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1039
fasta sequence
                              [GACGCGAGCGAGCCAGAGCAACGCAAGCAAGCAAGCAAGCAGCTAGCTAGCGCAGCGGCAATGGCGATCGTGGGCGAGGAGTACTGCTCCGCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCGGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACGGAGGGGGAGCCGCCTCCGCCGGCGAGCTCGCGCTCCTCGGCCCCGCCGGAGAGGCGCTCATCACCGTGCGCCGCCGCCGCCCGTCCCTGCACCAACGCTGGGAGGGCTACCTCGGCGCCCGCGCCGACGGCCAGAAGCCTCTCTTCTCTGCTCGCCGCTCCTCCATCCTCGGCGGCGCCGCGGCCGGCGCTGTCGTCGAGCTCCTCGCCCCGCTCCCCGCCTCCTTCTCGTCTACCCACGCTGCTGCCGCCGAGCTCCTCCGCGTCGATGGCTCCTTCCCGCGGCGGTGCTGCCGCGTGGTGGCGCCCAAGGCCGAGTCAGGCGGGGAGGCGGCGGTGGTGGCAGAGATCAGGAGGAAGGTGGACGAGGGGGCGCGGGTGGTCATGGGCAGGGACGTGTTCGTCCTGCGGGTGGGCGCCGGGTTCGACGCGGCGTTCGCCATGGCGATCGTCCTCGTGCTCGATCAGATCGCCGGCGACGAGGCCGACGGCAACGCCGGAGAGGAAACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAATGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATACATAGCA-ATCGCCAGAATGGCAGATGAATGTGTGGATTCTTGAAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTAAATTTTCCATTGAAAGTGAGCAAAT]

[+] EMBL AK069298             [GACGCGAGCGAGCCAGAGCAACGCAAGCAAGCAAGCAAGCAGCTAGCTAGCGCAGCGGCAATGGCGATCGTGGGCGAGGAGTACTGCTCCGCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCGGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACGGAGGGGGAGCCGCCTCCGCCGGCGAGCTCGCGCTCCTCGGCCCCGCCGGAGAGGCGCTCATCACCGTGCGCCGCCGCCGCCCGTCCCTGCACCAACGCTGGGAGGGCTACCTCGGCGCCCGCGCCGACGGCCAGAAGCCTCTCTTCTCTGCTCGCCGCTCCTCCATCCTCGGCGGCGCCGCGGCCGGCGCTGTCGTCGAGCTCCTCGCCCCGCTCCCCGCCTCCTTCTCGTCTACCCACGCTGCTGCCGCCGAGCTCCTCCGCGTCGATGGCTCCTTCCCGCGGCGGTGCTGCCGCGTGGTGGCGCCCAAGGCCGAGTCAGGCGGGGAGGCGGCGGTGGTGGCAGAGATCAGGAGGAAGGTGGACGAGGGGGCGCGGGTGGTCATGGGCAGGGACGTGTTCGTCCTGCGGGTGGGCGCCGGGTTCGACGCGGCGTTCGCCATGGCGATCGTCCTCGTGCTCGATCAGATCGCCGGCGACGAGGCCGACGGCAACGCCGGAGAGGAAACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAATGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATACATAGCA ATCGCCAGAATGGCAGATGAATGTGTGGATTCTTGAAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTAAATTTTCCATTGAAAGTGAGCAAAT]
[+] EMBL BI804158             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gggcgcCCTTTTTTTTTTTTTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAAAGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATACATAGCACATCGCCAGAATGGCAGATGAAaaaaaaaa                                                                                     ]


>consensus_8562#0 GACGCGAGCGAGCCAGAGCAACGCAAGCAAGCAAGCAAGCAGCTAGCTAGCGCAGCGGCA ATGGCGATCGTGGGCGAGGAGTACTGCTCCGCGGAGGAGCGGGTGCTCACGGTGCGCAAG ACCTCCCACTTCTCCCCCGGCGACGGCTTCGCGGCCTACGACCACCGCACCGGCGGCCTC GCCTTCCGCGCCGACACCTACGGCCGCGGCCACGGAGGGGGAGCCGCCTCCGCCGGCGAG CTCGCGCTCCTCGGCCCCGCCGGAGAGGCGCTCATCACCGTGCGCCGCCGCCGCCCGTCC CTGCACCAACGCTGGGAGGGCTACCTCGGCGCCCGCGCCGACGGCCAGAAGCCTCTCTTC TCTGCTCGCCGCTCCTCCATCCTCGGCGGCGCCGCGGCCGGCGCTGTCGTCGAGCTCCTC GCCCCGCTCCCCGCCTCCTTCTCGTCTACCCACGCTGCTGCCGCCGAGCTCCTCCGCGTC GATGGCTCCTTCCCGCGGCGGTGCTGCCGCGTGGTGGCGCCCAAGGCCGAGTCAGGCGGG GAGGCGGCGGTGGTGGCAGAGATCAGGAGGAAGGTGGACGAGGGGGCGCGGGTGGTCATG GGCAGGGACGTGTTCGTCCTGCGGGTGGGCGCCGGGTTCGACGCGGCGTTCGCCATGGCG ATCGTCCTCGTGCTCGATCAGATCGCCGGCGACGAGGCCGACGGCAACGCCGGAGAGGAA ACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTTTTTGTGTA TAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTG TGTACGCCTTTGCTCCGGAGAAAACGGCAATGTGCAATACGTGTTATGCAACTTATTTCG AAGTTTTTAGTTTGTATACATAGCAATCGCCAGAATGGCAGATGAATGTGTGGATTCTTG AAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTAAATTTT CCATTGAAAGTGAGCAAAT



consensusID : consensus_8562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence
                              [GAGGNAGTTCTGCTCCGCGGGGATGACCGGGTGCTCACGGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCNGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACAGGAAGGGGAGCCGCCTCCGCCNGCNAAGCTCGCGCTCCTCTGCCCCNCCGGNAAANGCNCTCATCACCNTGCGCCGCCGCCGCCCNTCCCTGCTCCAACCCTGGGAANGGCTACCTCNGCGNCCGCCCCCGNATTGNTTTTTTTCCTCTCTTC]

[+] EMBL BE228515             [GAGGNAGTTCTGCTCCGCGGGGATGACCGGGTGCTCACGGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCNGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACAGGAAGGGGAGCCGCCTCCGCCNGCNAAGCTCGCGCTCCTCTGCCCCNCCGGNAAANGCNCTCATCACCNTGCGCCGCCGCCGCCCNTCCCTGCTCCAACCCTGGGAANGGCTACCTCNGCGNCCGCCCCCGNATTGNTTTTTTTCCTCTCTTC]


>consensus_8562#1 GAGGNAGTTCTGCTCCGCGGGGATGACCGGGTGCTCACGGGTGCGCAAGACCTCCCACTT CTCCCCCGGCGACGGCTTCGCNGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGC CGACACCTACGGCCGCGGCCACAGGAAGGGGAGCCGCCTCCGCCNGCNAAGCTCGCGCTC CTCTGCCCCNCCGGNAAANGCNCTCATCACCNTGCGCCGCCGCCGCCCNTCCCTGCTCCA ACCCTGGGAANGGCTACCTCNGCGNCCGCCCCCGNATTGNTTTTTTTCCTCTCTTC



consensusID : consensus_8562#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence
                              [GGCACGNGACNTCNCGANNACGNTANGATGCNACTCNTACNTCCNCANGCTAGCCNGCAAGCAGCTAGCTANCGCATCGGCAATNGCGATNGTGGGCGAAGNGTNCTGCTCCNCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCNCACTTCTCCCCCGGCGACGGTTTCNCGGNCTNNGACNNNCGCANCGGCGGCCTCGCCTTCCGCGCCNANCCCTACTGCCGCNGNCTCCNNNGGGGAGCCNCCTCCTCCGGTGNGCTCCCNCTCCTCGNCTTTTTTNGNGNTN]

[+] EMBL AA753111             [GGCACGNGACNTCNCGANNACGNTANGATGCNACTCNTACNTCCNCANGCTAGCCNGCAAGCAGCTAGCTANCGCATCGGCAATNGCGATNGTGGGCGAAGNGTNCTGCTCCNCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCNCACTTCTCCCCCGGCGACGGTTTCNCGGNCTNNGACNNNCGCANCGGCGGCCTCGCCTTCCGCGCCNANCCCTACTGCCGCNGNCTCCNNNGGGGAGCCNCCTCCTCCGGTGNGCTCCCNCTCCTCGNCTTTTTTNGNGNTN]


>consensus_8562#2 GGCACGNGACNTCNCGANNACGNTANGATGCNACTCNTACNTCCNCANGCTAGCCNGCAA GCAGCTAGCTANCGCATCGGCAATNGCGATNGTGGGCGAAGNGTNCTGCTCCNCGGAGGA GCGGGTGCTCACGGTGCGCAAGACCTCNCACTTCTCCCCCGGCGACGGTTTCNCGGNCTN NGACNNNCGCANCGGCGGCCTCGCCTTCCGCGCCNANCCCTACTGCCGCNGNCTCCNNNG GGGAGCCNCCTCCTCCGGTGNGCTCCCNCTCCTCGNCTTTTTTNGNGNTN



consensusID : consensus_8562#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence
                              [AGAGGACGAGACAAGGGGGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAAAGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATNCATAGCAAAAAAAAAAAAAAAA]

[-] EMBL CA760659             [AGAGGACGAGACAAGGGGGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAAAGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATNCATAGCAAAAAAAAAAAAAAAA]


>consensus_8562#3 AGAGGACGAGACAAGGGGGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATT TTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGC AAAGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATNCATAGCAAAA AAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8562#0      GACGCGAGCGAGCCAGAGCAACGCAAGCAAGCAAGCAAGCAGCTAGCTAGCGCAGCGGCA 60
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      ATGGCGATCGTGGGCGAGGAGTACTGCTCCGCGGAGGAGCGGGTGCTCACGGTGCGCAAG 120
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      ACCTCCCACTTCTCCCCCGGCGACGGCTTCGCGGCCTACGACCACCGCACCGGCGGCCTC 180
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      GCCTTCCGCGCCGACACCTACGGCCGCGGCCACGGAGGGGGAGCCGCCTCCGCCGGCGAG 240
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      CTCGCGCTCCTCGGCCCCGCCGGAGAGGCGCTCATCACCGTGCGCCGCCGCCGCCCGTCC 300
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      CTGCACCAACGCTGGGAGGGCTACCTCGGCGCCCGCGCCGACGGCCAGAAGCCTCTCTTC 360
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      TCTGCTCGCCGCTCCTCCATCCTCGGCGGCGCCGCGGCCGGCGCTGTCGTCGAGCTCCTC 420
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      GCCCCGCTCCCCGCCTCCTTCTCGTCTACCCACGCTGCTGCCGCCGAGCTCCTCCGCGTC 480
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      GATGGCTCCTTCCCGCGGCGGTGCTGCCGCGTGGTGGCGCCCAAGGCCGAGTCAGGCGGG 540
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      GAGGCGGCGGTGGTGGCAGAGATCAGGAGGAAGGTGGACGAGGGGGCGCGGGTGGTCATG 600
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      GGCAGGGACGTGTTCGTCCTGCGGGTGGGCGCCGGGTTCGACGCGGCGTTCGCCATGGCG 660
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      ATCGTCCTCGTGCTCGATCAGATCGCCGGCGACGAGGCCGACGGCAACGCCGGAGAGGAA 720
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      ACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTT--TTTGTG 778
consensus_8562#3      -----------------------AGAGGACGAGACAAGGGG-----GGTCTT--TTTGTG 30
consensus_8562#1      -----------------GAGGNAGTTCTGCTCCGCGGGGATGACCGGGTGCTCACGGGTG 43
consensus_8562#2      --------------------GGCACGNGACNTCNCGANNACGNTANGATGCN-ACTCNTA 39
                                                   *    *           * *         * 

consensus_8562#0      TATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGG 838
consensus_8562#3      TATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGG 90
consensus_8562#1      CGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCNGCCTACGACCACCGCACCGGC 103
consensus_8562#2      CNTCCNCANGCTAGCCNGCAAGCAGCTAGCTANCGCATCGGCAATNGCGATNGTGGGCGA 99
                                *   *         *          *                      * 

consensus_8562#0      TGTGTACGCCTTTGCTCCGGAGAAAACG---GCAATGTGCAATACGTGTTA-TGCAACTT 894
consensus_8562#3      TGTGTACGCCTTTGCTCCGGAGAAAACG---GCAAAGTGCAATACGTGTTA-TGCAACTT 146
consensus_8562#1      GGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGC-CACAGGAAGGGGAGCCGCCTCCG 162
consensus_8562#2      AGNGTNCTGCTCCNCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCNCACT-TCTCCC 158
                       *  *     *   *   *        *    *      **  *             *  

consensus_8562#0      ATTTCGAAGTTTTTAGTTTGTATACATAGCAATCGCCAGAATGGCAGATGAATGTGTGGA 954
consensus_8562#3      ATTTCGAAGTTTTTAGTTTGTATNCATAGCAAAAAAAAAAAAAAAA-------------- 192
consensus_8562#1      CCNGCNAAGCTCGCGCT-CCTCTGCCCCNCCGGNAAANGCNCTCATCACCNTGCGCCGCC 221
consensus_8562#2      CCGGCGACGGTTTCNCGGNCTNNGACNNNCGCANCGGCGGCCTCGCCTTCC-GCGCCNAN 217
                          * * * *         *        *                              

consensus_8562#0      TTCTTGAAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTA 1014
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      GCCGCCCNTCCCTGCTCCAACCCTGGGAANGGCTACCTCNGCGNCCGCCCCCGNATTGNT 281
consensus_8562#2      CCCTACTGCCGCNGNCTCCNNNGGGGAGCCNCCTCCTCCGGTGNGCTCCCNCTCCTCGNC 277
                                                                                  

consensus_8562#0      AATTTTCCATTGAAAGTGAGCAAAT 1039
consensus_8562#3      -------------------------
consensus_8562#1      TTTTTTCCTCTCTTC---------- 296
consensus_8562#2      TTTTTTNGNGNTN------------ 290
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)