These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1039 fasta sequence [GACGCGAGCGAGCCAGAGCAACGCAAGCAAGCAAGCAAGCAGCTAGCTAGCGCAGCGGCAATGGCGATCGTGGGCGAGGAGTACTGCTCCGCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCGGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACGGAGGGGGAGCCGCCTCCGCCGGCGAGCTCGCGCTCCTCGGCCCCGCCGGAGAGGCGCTCATCACCGTGCGCCGCCGCCGCCCGTCCCTGCACCAACGCTGGGAGGGCTACCTCGGCGCCCGCGCCGACGGCCAGAAGCCTCTCTTCTCTGCTCGCCGCTCCTCCATCCTCGGCGGCGCCGCGGCCGGCGCTGTCGTCGAGCTCCTCGCCCCGCTCCCCGCCTCCTTCTCGTCTACCCACGCTGCTGCCGCCGAGCTCCTCCGCGTCGATGGCTCCTTCCCGCGGCGGTGCTGCCGCGTGGTGGCGCCCAAGGCCGAGTCAGGCGGGGAGGCGGCGGTGGTGGCAGAGATCAGGAGGAAGGTGGACGAGGGGGCGCGGGTGGTCATGGGCAGGGACGTGTTCGTCCTGCGGGTGGGCGCCGGGTTCGACGCGGCGTTCGCCATGGCGATCGTCCTCGTGCTCGATCAGATCGCCGGCGACGAGGCCGACGGCAACGCCGGAGAGGAAACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAATGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATACATAGCA-ATCGCCAGAATGGCAGATGAATGTGTGGATTCTTGAAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTAAATTTTCCATTGAAAGTGAGCAAAT] [+] EMBL AK069298 [GACGCGAGCGAGCCAGAGCAACGCAAGCAAGCAAGCAAGCAGCTAGCTAGCGCAGCGGCAATGGCGATCGTGGGCGAGGAGTACTGCTCCGCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCGGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACGGAGGGGGAGCCGCCTCCGCCGGCGAGCTCGCGCTCCTCGGCCCCGCCGGAGAGGCGCTCATCACCGTGCGCCGCCGCCGCCCGTCCCTGCACCAACGCTGGGAGGGCTACCTCGGCGCCCGCGCCGACGGCCAGAAGCCTCTCTTCTCTGCTCGCCGCTCCTCCATCCTCGGCGGCGCCGCGGCCGGCGCTGTCGTCGAGCTCCTCGCCCCGCTCCCCGCCTCCTTCTCGTCTACCCACGCTGCTGCCGCCGAGCTCCTCCGCGTCGATGGCTCCTTCCCGCGGCGGTGCTGCCGCGTGGTGGCGCCCAAGGCCGAGTCAGGCGGGGAGGCGGCGGTGGTGGCAGAGATCAGGAGGAAGGTGGACGAGGGGGCGCGGGTGGTCATGGGCAGGGACGTGTTCGTCCTGCGGGTGGGCGCCGGGTTCGACGCGGCGTTCGCCATGGCGATCGTCCTCGTGCTCGATCAGATCGCCGGCGACGAGGCCGACGGCAACGCCGGAGAGGAAACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAATGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATACATAGCA ATCGCCAGAATGGCAGATGAATGTGTGGATTCTTGAAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTAAATTTTCCATTGAAAGTGAGCAAAT] [+] EMBL BI804158 [ gggcgcCCTTTTTTTTTTTTTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAAAGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATACATAGCACATCGCCAGAATGGCAGATGAAaaaaaaaa ] consensusID : consensus_8562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [GAGGNAGTTCTGCTCCGCGGGGATGACCGGGTGCTCACGGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCNGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACAGGAAGGGGAGCCGCCTCCGCCNGCNAAGCTCGCGCTCCTCTGCCCCNCCGGNAAANGCNCTCATCACCNTGCGCCGCCGCCGCCCNTCCCTGCTCCAACCCTGGGAANGGCTACCTCNGCGNCCGCCCCCGNATTGNTTTTTTTCCTCTCTTC] [+] EMBL BE228515 [GAGGNAGTTCTGCTCCGCGGGGATGACCGGGTGCTCACGGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCNGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACAGGAAGGGGAGCCGCCTCCGCCNGCNAAGCTCGCGCTCCTCTGCCCCNCCGGNAAANGCNCTCATCACCNTGCGCCGCCGCCGCCCNTCCCTGCTCCAACCCTGGGAANGGCTACCTCNGCGNCCGCCCCCGNATTGNTTTTTTTCCTCTCTTC] consensusID : consensus_8562#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [GGCACGNGACNTCNCGANNACGNTANGATGCNACTCNTACNTCCNCANGCTAGCCNGCAAGCAGCTAGCTANCGCATCGGCAATNGCGATNGTGGGCGAAGNGTNCTGCTCCNCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCNCACTTCTCCCCCGGCGACGGTTTCNCGGNCTNNGACNNNCGCANCGGCGGCCTCGCCTTCCGCGCCNANCCCTACTGCCGCNGNCTCCNNNGGGGAGCCNCCTCCTCCGGTGNGCTCCCNCTCCTCGNCTTTTTTNGNGNTN] [+] EMBL AA753111 [GGCACGNGACNTCNCGANNACGNTANGATGCNACTCNTACNTCCNCANGCTAGCCNGCAAGCAGCTAGCTANCGCATCGGCAATNGCGATNGTGGGCGAAGNGTNCTGCTCCNCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCNCACTTCTCCCCCGGCGACGGTTTCNCGGNCTNNGACNNNCGCANCGGCGGCCTCGCCTTCCGCGCCNANCCCTACTGCCGCNGNCTCCNNNGGGGAGCCNCCTCCTCCGGTGNGCTCCCNCTCCTCGNCTTTTTTNGNGNTN] consensusID : consensus_8562#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence [AGAGGACGAGACAAGGGGGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAAAGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATNCATAGCAAAAAAAAAAAAAAAA] [-] EMBL CA760659 [AGAGGACGAGACAAGGGGGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAAAGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATNCATAGCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8562#0 GACGCGAGCGAGCCAGAGCAACGCAAGCAAGCAAGCAAGCAGCTAGCTAGCGCAGCGGCA 60 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 ATGGCGATCGTGGGCGAGGAGTACTGCTCCGCGGAGGAGCGGGTGCTCACGGTGCGCAAG 120 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 ACCTCCCACTTCTCCCCCGGCGACGGCTTCGCGGCCTACGACCACCGCACCGGCGGCCTC 180 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 GCCTTCCGCGCCGACACCTACGGCCGCGGCCACGGAGGGGGAGCCGCCTCCGCCGGCGAG 240 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 CTCGCGCTCCTCGGCCCCGCCGGAGAGGCGCTCATCACCGTGCGCCGCCGCCGCCCGTCC 300 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 CTGCACCAACGCTGGGAGGGCTACCTCGGCGCCCGCGCCGACGGCCAGAAGCCTCTCTTC 360 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 TCTGCTCGCCGCTCCTCCATCCTCGGCGGCGCCGCGGCCGGCGCTGTCGTCGAGCTCCTC 420 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 GCCCCGCTCCCCGCCTCCTTCTCGTCTACCCACGCTGCTGCCGCCGAGCTCCTCCGCGTC 480 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 GATGGCTCCTTCCCGCGGCGGTGCTGCCGCGTGGTGGCGCCCAAGGCCGAGTCAGGCGGG 540 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 GAGGCGGCGGTGGTGGCAGAGATCAGGAGGAAGGTGGACGAGGGGGCGCGGGTGGTCATG 600 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 GGCAGGGACGTGTTCGTCCTGCGGGTGGGCGCCGGGTTCGACGCGGCGTTCGCCATGGCG 660 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 ATCGTCCTCGTGCTCGATCAGATCGCCGGCGACGAGGCCGACGGCAACGCCGGAGAGGAA 720 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 ------------------------------------------------------------ consensus_8562#2 ------------------------------------------------------------ consensus_8562#0 ACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTT--TTTGTG 778 consensus_8562#3 -----------------------AGAGGACGAGACAAGGGG-----GGTCTT--TTTGTG 30 consensus_8562#1 -----------------GAGGNAGTTCTGCTCCGCGGGGATGACCGGGTGCTCACGGGTG 43 consensus_8562#2 --------------------GGCACGNGACNTCNCGANNACGNTANGATGCN-ACTCNTA 39 * * * * * consensus_8562#0 TATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGG 838 consensus_8562#3 TATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGG 90 consensus_8562#1 CGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCNGCCTACGACCACCGCACCGGC 103 consensus_8562#2 CNTCCNCANGCTAGCCNGCAAGCAGCTAGCTANCGCATCGGCAATNGCGATNGTGGGCGA 99 * * * * * consensus_8562#0 TGTGTACGCCTTTGCTCCGGAGAAAACG---GCAATGTGCAATACGTGTTA-TGCAACTT 894 consensus_8562#3 TGTGTACGCCTTTGCTCCGGAGAAAACG---GCAAAGTGCAATACGTGTTA-TGCAACTT 146 consensus_8562#1 GGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGC-CACAGGAAGGGGAGCCGCCTCCG 162 consensus_8562#2 AGNGTNCTGCTCCNCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCNCACT-TCTCCC 158 * * * * * * * ** * * consensus_8562#0 ATTTCGAAGTTTTTAGTTTGTATACATAGCAATCGCCAGAATGGCAGATGAATGTGTGGA 954 consensus_8562#3 ATTTCGAAGTTTTTAGTTTGTATNCATAGCAAAAAAAAAAAAAAAA-------------- 192 consensus_8562#1 CCNGCNAAGCTCGCGCT-CCTCTGCCCCNCCGGNAAANGCNCTCATCACCNTGCGCCGCC 221 consensus_8562#2 CCGGCGACGGTTTCNCGGNCTNNGACNNNCGCANCGGCGGCCTCGCCTTCC-GCGCCNAN 217 * * * * * * consensus_8562#0 TTCTTGAAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTA 1014 consensus_8562#3 ------------------------------------------------------------ consensus_8562#1 GCCGCCCNTCCCTGCTCCAACCCTGGGAANGGCTACCTCNGCGNCCGCCCCCGNATTGNT 281 consensus_8562#2 CCCTACTGCCGCNGNCTCCNNNGGGGAGCCNCCTCCTCCGGTGNGCTCCCNCTCCTCGNC 277 consensus_8562#0 AATTTTCCATTGAAAGTGAGCAAAT 1039 consensus_8562#3 ------------------------- consensus_8562#1 TTTTTTCCTCTCTTC---------- 296 consensus_8562#2 TTTTTTNGNGNTN------------ 290 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||