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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 594 fasta sequence
[GAGACCATAGCATTCTCAGCTTAGCACCAGCTAGCTAGCTAGCTACCTGAATACTACACTGAAGAAGAATCGATCGATATCTGAAGGAAGTGAAGTAAGTGATGGGTTCAGAGACGTTCTTGGAGATCTTGCTGGCCATCCTGCTGCCGCCGCTCGGCGTC-TTCCTCCGCTACGGCATC-GGCATGGAGTTCTGGATCGCCCTGCT-GCTCACCATCCT-GGGATACTTACCCGGCATCATCTACGCTG-TTTATG-TGCTTGTTG-CTT-AATTAGTTAGTT-ACTACCAGTGATCTG-TTCTGATCGATCGATTATGTTAGTATCATGGTTTAGTTTAGTTGGTTTCTATTATGTAAGTCGTA-CTAGCTGCTACTTACGGCATGTTCTTCGGTTCCTGCTTGCCTGGATCAGTGGAGCTAGTCGCCTAGACTAGACATCGATCTCTGTAGTTTCTGTCAGCATTCAGAAAAGTGTGATCTGAATT-CTGACTTTCT-GATGGATCGATGAGTATGGATGATTCATGTGTGATCTGAATGGATGATGATCTTCATGTATGTCTCCGGTTTGTATATTCAGACATTCAGTTTCTTTAAAAAAAAA]
[+] EMBL OS0022A [GAGACCATAGCATTCTCAGCTTAGCACNAGCTAGCTAGCTAGCTACCTGAATACTACACTGAAGAAGAATCGATCGATATCTGAAGGAAGTGAAGTAAGTNATGGGTTCAGAGACGTTCTTGGAGATCTTGCTGGCCATCCTGCTGCTGCCGCTCGG GTCTTTNCTCCGCTACGGCATCGGGCATGGAGTTCTGGATCGNCCTGCTGGCTCACCATCCTGGGGATACTTACCCGGCATCATCTACGCTGTTTTATGTTGCTTGTTGNCTTAAATTAGTTAGTTNACTACCAGTGATCTGTTTCTGAat ]
[+] EMBL AU088623 [ GACCATAGCATTCTCAGCTTAGCACCAGCTAGCTAGCTAGCTACCTGAATACTACACTGAAGAAGAATCGATCGATATCTGAAGGAAGTGAAGTAAGTGATGGGTTCAGAGACGTTCTTGGAGATCTTGCTGGCCATCCTGCTGCCGCCGCTCGGCGTC TTCCTCCGCTACGGCATC GGCATGGAGTTCTGGATCGCCCTGCT GCTCACCATCCT GGGATACTTACCCGGCATCATCTACGCTG TTTATG TGCTTGTTG CTT AATTAGTTAGTT ACTACCAGTGATCTG TTCTGATCGATCGATTATGTTAGTATCATGGTTTAGTTTAGTTGGTTTCTATTATGTAAGTCGTA CTAGCTGCTACTTACGGCATGTTCTTCGGTTCCTGCTTGCCTGGATCAGTGGAGCTAGTCGCCTAGACTAGACATCGATCTCTGTAGTTTCTGTCAGCATTCAGAAAAGTGTGATCTGAATT CTGACTTTCT GATGGATCGATGAGTATGGATGATTCATGTGTGATCTGAATGGATGATGATCTTCATGTATGTCTCCGGTTTGTATATTCAGACATTCAGTTTCTTTAAAAAAAAA]
[+] EMBL BI800095 [ ATAGCATTCTCAGCTTAGCACCAGCTAGCTAGCTAGCTACCTGAATACTACACTGAAGAAGAATCGATCGATATCTGAAGGAAGTGAAGTAAGTCAT GGTTCAGAGACGTTCTTGGAGATCTTGCT GCCATCCTGCTGCCGCCGCTCGGCGTC TTCCTCCGCTACGGCATC GGCATGGAGTTCTGGATCGCCCTGCT GCTCACCATCCT GGGATACTTACCCGGCATCATCTACGCTG TTTATG TGCTTGTTG CTT AATTAGTTAGTT ACTACCAGTGATCTG TTCTGATCGATCGATTATGTTAGTATCATGGTTTAGTTTAGTTGGTTTCTATTATGTAAGTCGTAGCTAGCTGCTACTTGCGGCATGTTCTTCGGTTCCTGCTTGCCTGGATCAGTGGAGCTAGTCGCCTAGACTAGACATCGATCTCTGTAGTTTCTGTCAGCATTCAGAAAAGTGTGATCTGAATTGCTGAC TTCTGGATGGATCGATGAGTATGGATGATTCATGTGTGATCTGAATGGATGATGATCTTCATGTATGTCaaaaaaaa ]
[+] EMBL CF319949 [ AAGAAGAATCGATCGATATCTGAAGGAAGTGAACTAAGTGATGGGTTCAAAGACGTTCTTGGAGATCTTGCTGGCCATCCTGCTGCCGCCGCTCGGCGTC TTCCTCCGCTACGGCATC GGCATGGAGTTCTGGATCGCCCTGCT GCTCACCATCCT GGGATACTTACCCGGCATCATCTACGCTG TTTATG TGCTTGTTG CTT AATTAGTTAGTT ACTACCAATGATCTG TTCTGATCGATCGATTATGTTAGTATCATGGTTTAGTTTAGGTGGTTTCTATTATGTAAGTCGTA CTAGCTGCTACTTACGGCATGTTCTTCGGTTCCTGCTTGCCTGGATCAGTGGAGCTATTCGCCTATACTAGACATCGATCTCTGTAGTTTCTGTCAGCATTCATAAAAGTGTGATCTGAATT CTGACTTTCT GATGGATCGATGACTATGGATGATTCATGTGTGATCTGAATG ]
consensusID : consensus_8564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence
[GGNCTCNCNANGCTTGCTTANGTTAGTTGGTTTCNCTNCTGAAGTCGTACNGCTGCTACTTGCGGCATGTTCTTCGGTTCCTGCTTGCCTGGATNNGTGGAGCTNGTCGCCTAGACTAGACATCGATCTCTGTAGTTTCTGTCAGCATTCAGAAAAGTGTGATCTGAATTCTGACTTTCTGATGGATCGATGAGTATGGATGATTCATGTGTGATCTGAATGGATGATGATCTTCATGTATGTCTCCGGTTTGTATATTCAGACACTCAGTTTCTTTCTTCCGTGGGTATGATCACAGCAAA]
[+] EMBL CA766511 [GGNCTCNCNANGCTTGCTTANGTTAGTTGGTTTCNCTNCTGAAGTCGTACNGCTGCTACTTGCGGCATGTTCTTCGGTTCCTGCTTGCCTGGATNNGTGGAGCTNGTCGCCTAGACTAGACATCGATCTCTGTAGTTTCTGTCAGCATTCAGAAAAGTGTGATCTGAATTCTGACTTTCTGATGGATCGATGAGTATGGATGATTCATGTGTGATCTGAATGGATGATGATCTTCATGTATGTCTCCGGTTTGTATATTCAGACACTCAGTTTCTTTCTTCCGTGGGTATGATCACAGCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8564#0 GAGACCATAGCATTCTCAGCTTAGCACCAGCTAGCTAGCTAGCTACCTGAATACTACACT 60
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 GAAGAAGAATCGATCGATATCTGAAGGAAGTGAAGTAAGTGATGGGTTCAGAGACGTTCT 120
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 TGGAGATCTTGCTGGCCATCCTGCTGCCGCCGCTCGGCGTCTTCCTCCGCTACGGCATCG 180
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 GCATGGAGTTCTGGATCGCCCTGCTGCTCACCATCCTGGGATACTTACCCGGCATCATCT 240
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 ACGCTGTTTATGTGCTTGTTGCTTAATTAGTTAGTTACTACCAGTGATCTGTTCTGATCG 300
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 ATCGATTATGTTAGTATCATGGTTTAGTTTAGTTGGTTTCTATTATGTAAGTCGTACTAG 360
consensus_8564#1 ------GGNCTCNCNANGCTTGCTTANGTTAGTTGGTTTCNCTNCTG-AAGTCGTACN-G 52
* * * * *** ************ * ** ********* *
consensus_8564#0 CTGCTACTTACGGCATGTTCTTCGGTTCCTGCTTGCCTGGATCAGTGGAGCTAGTCGCCT 420
consensus_8564#1 CTGCTACTTGCGGCATGTTCTTCGGTTCCTGCTTGCCTGGATNNGTGGAGCTNGTCGCCT 112
********* ******************************** ******** *******
consensus_8564#0 AGACTAGACATCGATCTCTGTAGTTTCTGTCAGCATTCAGAAAAGTGTGATCTGAATTCT 480
consensus_8564#1 AGACTAGACATCGATCTCTGTAGTTTCTGTCAGCATTCAGAAAAGTGTGATCTGAATTCT 172
************************************************************
consensus_8564#0 GACTTTCTGATGGATCGATGAGTATGGATGATTCATGTGTGATCTGAATGGATGATGATC 540
consensus_8564#1 GACTTTCTGATGGATCGATGAGTATGGATGATTCATGTGTGATCTGAATGGATGATGATC 232
************************************************************
consensus_8564#0 TTCATGTATGTCTCCGGTTTGTATATTCAGACATTCAGTTTCTTTAAAAAAAAA------ 594
consensus_8564#1 TTCATGTATGTCTCCGGTTTGTATATTCAGACACTCAGTTTCTTTCTTCCGTGGGTATGA 292
********************************* ***********
consensus_8564#0 ----------
consensus_8564#1 TCACAGCAAA 302
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||