cluster # 857

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 857 cluster # 857 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_857#0 length = 598 sequences # 1

consensus_857#1 length = 593 sequences # 1

consensusID : consensus_857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [TCTATTTGAAAAATCAGTATAATATCGTATTTGAGAGAAAATTAAAATGGCCGCACGTGGTTCAGCTCGTAACTCACGATTGAATAAGAAACCAAAGAAAAATAAATTACGTGGTAATGTCTCACACGGTCATGGTCGTATCGGTAAACACCGTAAACATCCCGGTGGTCGTGGTAATGCTGGTGGTCTTCATCATCACCGAACATTATTCGATAAATATCACCCGGGCTACTTCGGTAAAGTTGGTCAACGTGAATTTCACAAATTGAAAAATCGTCGTTGGTGTCCATCAGTCAATCTTGATCGTTTGTGGTCACTTTTAACTCAACGTACACAAGAAAAATATACAGCAGAAGAACAAAAAGTCGTTCCTGTTATCAATGTTGTTCGTTCGGGTTACTTCAAAGTTTTAGGCAAAGGTGTTTTGCCAAAACAACCATTGATTGTCAAGGCAAAATTCTTCTCTCGACGTGCCGAAAGAAAAATCANAGCAGCTGGTGGTGCTTGCATATTACTTGCCTAAACAACAACATCTCGAAATCCATCATTTAACACAACCGATGACAAAAGGATCGAAATAATCATATTCGTTGACGTT]

[+] EMBL CA758844             [TCTATTTGAAAAATCAGTATAATATCGTATTTGAGAGAAAATTAAAATGGCCGCACGTGGTTCAGCTCGTAACTCACGATTGAATAAGAAACCAAAGAAAAATAAATTACGTGGTAATGTCTCACACGGTCATGGTCGTATCGGTAAACACCGTAAACATCCCGGTGGTCGTGGTAATGCTGGTGGTCTTCATCATCACCGAACATTATTCGATAAATATCACCCGGGCTACTTCGGTAAAGTTGGTCAACGTGAATTTCACAAATTGAAAAATCGTCGTTGGTGTCCATCAGTCAATCTTGATCGTTTGTGGTCACTTTTAACTCAACGTACACAAGAAAAATATACAGCAGAAGAACAAAAAGTCGTTCCTGTTATCAATGTTGTTCGTTCGGGTTACTTCAAAGTTTTAGGCAAAGGTGTTTTGCCAAAACAACCATTGATTGTCAAGGCAAAATTCTTCTCTCGACGTGCCGAAAGAAAAATCANAGCAGCTGGTGGTGCTTGCATATTACTTGCCTAAACAACAACATCTCGAAATCCATCATTTAACACAACCGATGACAAAAGGATCGAAATAATCATATTCGTTGACGTT]




>consensus_857#0
TCTATTTGAAAAATCAGTATAATATCGTATTTGAGAGAAAATTAAAATGGCCGCACGTGG
TTCAGCTCGTAACTCACGATTGAATAAGAAACCAAAGAAAAATAAATTACGTGGTAATGT
CTCACACGGTCATGGTCGTATCGGTAAACACCGTAAACATCCCGGTGGTCGTGGTAATGC
TGGTGGTCTTCATCATCACCGAACATTATTCGATAAATATCACCCGGGCTACTTCGGTAA
AGTTGGTCAACGTGAATTTCACAAATTGAAAAATCGTCGTTGGTGTCCATCAGTCAATCT
TGATCGTTTGTGGTCACTTTTAACTCAACGTACACAAGAAAAATATACAGCAGAAGAACA
AAAAGTCGTTCCTGTTATCAATGTTGTTCGTTCGGGTTACTTCAAAGTTTTAGGCAAAGG
TGTTTTGCCAAAACAACCATTGATTGTCAAGGCAAAATTCTTCTCTCGACGTGCCGAAAG
AAAAATCANAGCAGCTGGTGGTGCTTGCATATTACTTGCCTAAACAACAACATCTCGAAA
TCCATCATTTAACACAACCGATGACAAAAGGATCGAAATAATCATATTCGTTGACGTT

consensusID : consensus_857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [ATCTAATTACGAACAGAAACTTATAAAAAAATGGCCGCACGTGGTTCAGCACGAAATTCTCGATTGAATAAGAAACCCAAGAAAACCAAATTACGTGGTAATGTCTCACATGGTCACGGTCGTGTTGGTAAACATCGTAAACATCCTGGTGGTCGTGGTAACGCTGGTGGTCTTCATCATCACCGTACTCTTTTCGACAAATATCACCCGGGTTACTTCGGTAAAGTTGGTCAACGTGAATTCCATAAATTGAAAAATCGCCGCTGGTGTCCATCTGTCAACCTCGATCGTTTATGGTCACTTTTGAGTCAACGAACACCAGCAAAATATTCCGAAGGAGAAGCTGCCGTCACACCTGTCATCAATGTTGTCCGATCAGGTTACCTCAAGGTGTTAGGCAAAGGTGTTCTACCAAACAACCACTCATTGTTAAGGCCAAATTCTTCTCGAGATCAGCTGAAGAAAAATCAAAGCTGCTGGTGGGTGCCTGTGTATTAGTAGCATGAGACATTCGTTACCATCACTTCTGTCTTTTGCTACCCAAAAGAAAAAATATGTTCACTATCACATTGGTTTTCTTTCCGTTGAGATCG]

[+] EMBL CA758950             [ATCTAATTACGAACAGAAACTTATAAAAAAATGGCCGCACGTGGTTCAGCACGAAATTCTCGATTGAATAAGAAACCCAAGAAAACCAAATTACGTGGTAATGTCTCACATGGTCACGGTCGTGTTGGTAAACATCGTAAACATCCTGGTGGTCGTGGTAACGCTGGTGGTCTTCATCATCACCGTACTCTTTTCGACAAATATCACCCGGGTTACTTCGGTAAAGTTGGTCAACGTGAATTCCATAAATTGAAAAATCGCCGCTGGTGTCCATCTGTCAACCTCGATCGTTTATGGTCACTTTTGAGTCAACGAACACCAGCAAAATATTCCGAAGGAGAAGCTGCCGTCACACCTGTCATCAATGTTGTCCGATCAGGTTACCTCAAGGTGTTAGGCAAAGGTGTTCTACCAAACAACCACTCATTGTTAAGGCCAAATTCTTCTCGAGATCAGCTGAAGAAAAATCAAAGCTGCTGGTGGGTGCCTGTGTATTAGTAGCATGAGACATTCGTTACCATCACTTCTGTCTTTTGCTACCCAAAAGAAAAAATATGTTCACTATCACATTGGTTTTCTTTCCGTTGAGATCG]




>consensus_857#1
ATCTAATTACGAACAGAAACTTATAAAAAAATGGCCGCACGTGGTTCAGCACGAAATTCT
CGATTGAATAAGAAACCCAAGAAAACCAAATTACGTGGTAATGTCTCACATGGTCACGGT
CGTGTTGGTAAACATCGTAAACATCCTGGTGGTCGTGGTAACGCTGGTGGTCTTCATCAT
CACCGTACTCTTTTCGACAAATATCACCCGGGTTACTTCGGTAAAGTTGGTCAACGTGAA
TTCCATAAATTGAAAAATCGCCGCTGGTGTCCATCTGTCAACCTCGATCGTTTATGGTCA
CTTTTGAGTCAACGAACACCAGCAAAATATTCCGAAGGAGAAGCTGCCGTCACACCTGTC
ATCAATGTTGTCCGATCAGGTTACCTCAAGGTGTTAGGCAAAGGTGTTCTACCAAACAAC
CACTCATTGTTAAGGCCAAATTCTTCTCGAGATCAGCTGAAGAAAAATCAAAGCTGCTGG
TGGGTGCCTGTGTATTAGTAGCATGAGACATTCGTTACCATCACTTCTGTCTTTTGCTAC
CCAAAAGAAAAAATATGTTCACTATCACATTGGTTTTCTTTCCGTTGAGATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_857#0      TCTATTTGAAAAATCAGTATAATATCGTATTTGAGAGAAAATTAAAATGGCCGCACGTGG 60
consensus_857#1      ----------------ATCTAATTACGAACAGAAACTTATAAAAAAATGGCCGCACGTGG 44
                                      * ****  ** *    *    * *  *****************

consensus_857#0      TTCAGCTCGTAACTCACGATTGAATAAGAAACCAAAGAAAAATAAATTACGTGGTAATGT 120
consensus_857#1      TTCAGCACGAAATTCTCGATTGAATAAGAAACCCAAGAAAACCAAATTACGTGGTAATGT 104
                     ****** ** ** ** ***************** *******  *****************

consensus_857#0      CTCACACGGTCATGGTCGTATCGGTAAACACCGTAAACATCCCGGTGGTCGTGGTAATGC 180
consensus_857#1      CTCACATGGTCACGGTCGTGTTGGTAAACATCGTAAACATCCTGGTGGTCGTGGTAACGC 164
                     ****** ***** ****** * ******** *********** ************** **

consensus_857#0      TGGTGGTCTTCATCATCACCGAACATTATTCGATAAATATCACCCGGGCTACTTCGGTAA 240
consensus_857#1      TGGTGGTCTTCATCATCACCGTACTCTTTTCGACAAATATCACCCGGGTTACTTCGGTAA 224
                     ********************* **  * ***** ************** ***********

consensus_857#0      AGTTGGTCAACGTGAATTTCACAAATTGAAAAATCGTCGTTGGTGTCCATCAGTCAATCT 300
consensus_857#1      AGTTGGTCAACGTGAATTCCATAAATTGAAAAATCGCCGCTGGTGTCCATCTGTCAACCT 284
                     ****************** ** ************** ** *********** ***** **

consensus_857#0      TGATCGTTTGTGGTCACTTTTAACTCAACGTACACAAGAAAAATATACAGCAGAAGAACA 360
consensus_857#1      CGATCGTTTATGGTCACTTTTGAGTCAACGAACACCAGCAAAATATTCCGAAGGAGAAGC 344
                      ******** *********** * ****** **** ** ******* * * ** ****  

consensus_857#0      AAAAGTCGTTCCTGTTATCAATGTTGTTCGTTCGGGTTACTTCAAAGTTTTAGGCAAAGG 420
consensus_857#1      TGCCGTCACACCTGTCATCAATGTTGTCCGATCAGGTTACCTCAAGGTGTTAGGCAAAGG 404
                         ***   ***** *********** ** ** ****** **** ** ***********

consensus_857#0      TGTTTTGCCAAAACAACCATTGATTGTCAAGGCAAAATTCTTCTCTCGACGTGCCGAAAG 480
consensus_857#1      TGTTCTACCAAA-CAACCACTCATTGTTAAGGCCAAATTCTTCTCGAGATCAGCTGAA-G 462
                     **** * ***** ****** * ***** ***** ***********  **   ** *** *

consensus_857#0      AAAAATCANAGCAGCTGGTGG-TGCTTGCATATTACTTGCCTAAACAA--CAACATCTCG 537
consensus_857#1      AAAAATCAAAGCTGCTGGTGGGTGCCTGTGTATTAGTAGCATGAGACATTCGTTACCATC 522
                     ******** *** ******** *** **  ***** * ** * *   *  *   * *   

consensus_857#0      AAATCCATCATTTAACACAACCGATGACAAAAGGATCGAAATAATCATATTCGTTGACGT 597
consensus_857#1      ACTTCTGTCTTTTGCTAC--CCAAAAGAAAAAATATGTTCACTATCACATTGGTTTTCTT 580
                     *  **  ** ***   **  ** *    ****  **    *  **** *** ***  * *

consensus_857#0      T------------ 598
consensus_857#1      TCCGTTGAGATCG 593
                     *