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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 835 fasta sequence
[ATAACCATGGGAGGATATACTACTGTGATCAACCAAGCATCAAGTTGTTCTGTGAGTACATGATAAAAACAACTCAGGAATCTGAGATCTTAAGCAGCTATTTGACTTACTAAGTCTGTATGTTCAAACTTTCTATATGGTTACTGAACTTAGTATTTGGCTGTAAATTATTCTATCATTGTATTATGCATGTATGATTAACTCAAAGATTTTAGCGATCATGATAAACTAATTATTCATCAAATTCAGTTCTACCAGAAATTGAAAATTAAAGTATATTAAGAGAAACCAAAAGCAAGAGATTGATTGATCTTGAACATAGTATTTGAACCTTTAGCTGGAAGCATAGGTTCATCAGGGTCTATAGTTCTAACTAATTATTTATAAATTCCTGTGATTTTGCAAAACAAAAACCAGATATTACGGCTCGTATTTGTAAGCTGTAATATAGGGTTAACTTTATATACGCTAAAGTTTCTGGTTTTGAGTTTAAAGGGAGGTATATTTTTTATCCTGAACAACCTGCTACAACGTGTTGGCATCGCTAATTGCTAAGCTCGTAATGTCTCTCTTTGCCTTGCCCTTGTTTAGTAGATGAGGCCGGTGAGTGCCTGATGATCCCAACCGTAAGCACATTGTACATTATCATTCCCATGGGTTGTGCTTGGAAGGTGAGATACTTGTGTATTGCCACTTTCATTGATCTATGTTGGCATCTGTACAGCGTGGTCCTAAATTTGTTTTGTAAACTGGTTGGCGTTAGTTTATTCATATATACATGACCTATGAGTCTNNNNNGTNTTATCGANNTGTTATTCANTTGTNTCNNNNNNNN]
[+] EMBL CB628836 [ATAACCATGGGAGGATATACTACTGTGATCAACCAAGCATCAAGTTGTTCTGTGAGTACATGATAAAAACAACTCAGGAATCTGAGATCTTAAGCAGCTATTTGACTTACTAAGTCTGTATGTTCAAACTTTCTATATGGTTACTGAACTTAGTATTTGGCTGTAAATTATTCTATCATTGTATTATGCATGTATGATTAACTCAAAGATTTTAGCGATCATGATAAACTAATTATTCATCAAATTCAGTTCTACCAGAAATTGAAAATTAAAGTATATTAAGAGAAACCAAAAGCAAGAGATTGATTGATCTTGAACATAGTATTTGAACCTTTAGCTGGAAGCATAGGTTCATCAGGGTCTATAGTTCTAACTAATTATTTATAAATTCCTGTGATTTTGCAAAACAAAAACCAGATATTACGGCTCGTATTTGTAAGCTGTAATATAGGGTTAACTTTATATACGCTAAAGTTTCTGGTTTTGAGTTTAAAGGGAGGTATATTTTTTATCCTGAACAACCTGCTACAACGTGTTGGCATCGCTAATTGCTAAGCTCGTAATGTCTCTCTTTGCCTTGCCCTTGTTTAGTAGATGAGGCCGGTGAGTGCCTGATGATCCCAACCGTAAGCACATTGTACATTATCATTCCCATGGGTTGTGCTTGGAAGGTGAGATACTTGTGTATTGCCACTTTCATTGATCTATGTTGGCATCTGTACAGCGTGGTCCTAAATTTGTTTTGTAAACTGGTTGGCGTTAGTTTATTCATATATACATGACCTA ]
[+] EMBL CF197186 [ TTGATCTTGAACATAGTATTTGAACCTTTAGCTGGAAGCATAGGTTCATCAGGGTCTATAGTTCTAACTAATTATTTATAAATTCCTGTGATTTTGCAAAACAAAAACCAGATATTACGGCTCGTATTTGTAAGCTGTAATATAGGGTTAACTTTATATACGCTAAAGTTTCTGGTTTTGAGTTTAAAGGGAGGTATATTTTTTATCCTGAACAACCTGCTACAACGTGTTGGCATCGCTAATTGCTAAGCTCGTAATGTCTCTCTTTGCCTTGCCCTTGTTTAGTAGATGAGGCCGGTGAGTGCCTGATGATCCCAACCGTAAGCACATTGTACATTATCATTCCCATGGGTTGTGCTTGGAAGGTGAGATACTTGTGTATTGCCACTTTCATTGATCTATGTTGGCATCTGTACAGCGTGGTCNNNNNNTTGTTTTGNNNNCTGGTTGGCGTTNNNTTATTCATATATACATGACCTATGAGTCTNNNNNGTNTTATCGANNTGTTATTCANTTGTNTCNNNNNNNN]
consensusID : consensus_8576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[GGACGAGACAAGGAGGGGCAGGGGACGGAATGCTGATGGCATGATGTTCGTTGCGGCGACGGGCGAGCCTGTGCATGGCAGCTGCTTCATCTGCGGCGACCCTACCCACTTCGCCAACGTCTGCCCCAACCGAGGGAGATAGATCTCATGAAAATTGCTCTGCGATGCCCATTCAGATGGCATCGTAATGGCGTTGTCATGTTTCAAGCTGGCCAGACAACAATGGGAAGGCATGTTAACAGGCATGAAGATCAGCCAAGCAGCAGAGTTGGACATTACTCATATCTATGAAGATGGGAGGCTATACTACTGTGATCAACCAAGCATCAAGTTGTTCTGTGAGCACATGTGAGTACATGATAAAAACAACTCAGGAATCTAAGATCTTAAGCAGCTATTTGACTTACTAAGTCTGCATGTTCAAACTTTCTATATGGTTACTGAACTTAGTATTTGGCTGTAAATTATTCTATCACTGTATTATGTATGTTTAACTCAAAGTTATTAGCGATCATGAGAAACTAATTATTCAT]
[+] EMBL CA765126 [GGACGAGACAAGGAGGGGCAGGGGACGGAATGCTGATGGCATGATGTTCGTTGCGGCGACGGGCGAGCCTGTGCATGGCAGCTGCTTCATCTGCGGCGACCCTACCCACTTCGCCAACGTCTGCCCCAACCGAGGGAGATAGATCTCATGAAAATTGCTCTGCGATGCCCATTCAGATGGCATCGTAATGGCGTTGTCATGTTTCAAGCTGGCCAGACAACAATGGGAAGGCATGTTAACAGGCATGAAGATCAGCCAAGCAGCAGAGTTGGACATTACTCATATCTATGAAGATGGGAGGCTATACTACTGTGATCAACCAAGCATCAAGTTGTTCTGTGAGCACATGTGAGTACATGATAAAAACAACTCAGGAATCTAAGATCTTAAGCAGCTATTTGACTTACTAAGTCTGCATGTTCAAACTTTCTATATGGTTACTGAACTTAGTATTTGGCTGTAAATTATTCTATCACTGTATTATGTATGTTTAACTCAAAGTTATTAGCGATCATGAGAAACTAATTATTCAT]
consensusID : consensus_8576#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence
[TCCTGCTCACATGTTTATCTTCTGAGCCTAGAGAAAGGTGCGATAATGGAGGTCCATAGATCTGAGCTATTGGAGAACCCAGGCGATAATGGAGGTCCATACACTTACAAGCTTATTTGCTTTCTCTTCTCTTCTTGTTTTGTCATAGTTCTAAGCTGCCCAGACAGAAATGGGAAGGCATGTTAGCAGGCATGAAGATGGTCCTAGCAGTAGAGTTGGACGCTACAGATATCTATAAAGATGGGAAGATGTGCTGCTGTGATCAAAACCAAGCATCAAGTTGTTCTGTGAGTACATGATAAAAACAACTCGGGTATCTGAGATCTTAGGCAGCTATTTGGCTTGGTGAGCCTATGTTTATGGGTTGGTCCAGTAGATACAGATCGACGTTCTACATGCTGTCCATTGTTATTGTCGTTGTGTTTTTCATTCCTCTTGGGTATTCGATTATCGAAATATAGCTCGTTTTTTTGCTTGCTGTTTTTTTTAACCAGCAATGCTTTCGATTGATGTGTAAAAA]
[+] EMBL BM418691 [TCCTGCTCACATGTTTATCTTCTGAGCCTAGAGAAAGGTGCGATAATGGAGGTCCATAGATCTGAGCTATTGGAGAACCCAGGCGATAATGGAGGTCCATACACTTACAAGCTTATTTGCTTTCTCTTCTCTTCTTGTTTTGTCATAGTTCTAAGCTGCCCAGACAGAAATGGGAAGGCATGTTAGCAGGCATGAAGATGGTCCTAGCAGTAGAGTTGGACGCTACAGATATCTATAAAGATGGGAAGATGTGCTGCTGTGATCAAAACCAAGCATCAAGTTGTTCTGTGAGTACATGATAAAAACAACTCGGGTATCTGAGATCTTAGGCAGCTATTTGGCTTGGTGAGCCTATGTTTATGGGTTGGTCCAGTAGATACAGATCGACGTTCTACATGCTGTCCATTGTTATTGTCGTTGTGTTTTTCATTCCTCTTGGGTATTCGATTATCGAAATATAGCTCGTTTTTTTGCTTGCTGTTTTTTTTAACCAGCAATGCTTTCGATTGATGTGTAAAAA]
[+] EMBL BI809825 [ CGGGTATCTGAGATCTTAGGCAGCTATTTGGCTTGGTGAGCCTATGTTTATGGGTTGGTCCCGTAGATACAGATCGACGTTCTACATGCTGTCCCTTGTTATTGTCGTTGTGTTTTTCATTCCTCTT GGTATTCGATTAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8576#0 ATAACCATGGGAGGATATACTACTGTGATCAACCAAGCATCAAGTTGTTCTGTGAGTACA 60
consensus_8576#1 ------------------------------------------------------------
consensus_8576#2 ------------------------------------------------------------
consensus_8576#0 TGATAAAAACAACTCAGGAATCTGAGATCTTAAGCAGCTATTTGACTTACTAAGTCTGTA 120
consensus_8576#1 ------------------------------------------------------------
consensus_8576#2 ------------------------------------------------------------
consensus_8576#0 TGTTCAAACTTTCTATATGGTTACTGAACTTAGTATTTGGCTGTAAATTATTCTATCATT 180
consensus_8576#1 ------------------------------------------------------------
consensus_8576#2 ------------------------------------------------------------
consensus_8576#0 GTATTATGCATGTATGATTAACTCAAAGATTTTAGCGATCATGATAAACTAATTATTCAT 240
consensus_8576#1 ------------------------------------------------------------
consensus_8576#2 ------------------------------------------------------------
consensus_8576#0 CAAATTCAGTTCTACCAGAAATTGAAAATTAAAGTATATTAAGAGAAACCAAAAGCAAGA 300
consensus_8576#1 ----------------GGACGAGACAAGGAGGGGCAGGGGACGGAATGCTGATGGCATGA 44
consensus_8576#2 ------------------------------------------------------------
consensus_8576#0 GATTGATTGATCTTGAACATAGTATTTGAACCTTTAGCTGGAAGCATAGGTTCATCAGGG 360
consensus_8576#1 TGTTCGTTG----CGGCGACGGG---CGAGCCTGTGCATGGCAGCT--GCTTCATCTGCG 95
consensus_8576#2 ----TCCTGCTCACATGTTTATCTTCTGAGCCTAGAGAAAGGTGCG----ATAATGGAGG 52
** ** *** * ** * ** *
consensus_8576#0 TCTATAGTTCTAACTAATTATTTATAAATTCCTGTGATTTTGCAAAACAAAAACCA--GA 418
consensus_8576#1 GCGAC---CCTACCCACTTCGCCAACGTCTGCCCCAACCGAGGGAGATAGATCTCATGAA 152
consensus_8576#2 TCCATAGATCTG---AGCTATTGGAGAACCCAGGCGATAATGGAGGTCCATACAC----- 104
* * ** * * * * *
consensus_8576#0 TATTACGGCTCGTATTTGTAAGCTG-TAATATAGGGTTAACTTTAT-ATA-CGCTAAAGT 475
consensus_8576#1 AATTGCTCTGCG-ATGCCCATTCAGATGGCATCGTAATGGCGTTGTCATG-TTTCAAGCT 210
consensus_8576#2 --TTACAA-GCTTATTTGCTTTCTCTTCTCTTC----TTGTTTTGTCATAGTTCTAAGCT 157
** * * ** * * * * ** * ** ** *
consensus_8576#0 TTCTGGTTTTGAGTTTAAAGGGAGGTATATTTTTTATCCTGAACAACCTGCTACAACGTG 535
consensus_8576#1 GGCCAGACAACAATGGGAAGGCATGT-TAACAGGCATGAAGATCAGCCAAGCAGCAGAGT 269
consensus_8576#2 GCCCAGACAGAAATGGGAAGGCATGT-TAGCAGGCATGAAGATGGTCCTAGCAGTAGAGT 216
* * * * **** * ** ** ** ** ** * *
consensus_8576#0 TTGGCATCGCTAATTGCTAAGCTCGTAATGTCTCTCTTTGCCTTGCCCTTGTTTAGTAGA 595
consensus_8576#1 TGGACATTACTCATATCTATGAAGATGGGA--------GGCTATACTACTGT--GATCAA 319
consensus_8576#2 TGGACGCTACAGATATCTATAAAGATGGGA--------AGATGTGCTGCTGTGATCAAAA 268
* * * * ** *** * * * * *** *
consensus_8576#0 TGAGGCCGGTGAGTGCCTGATGATCCCAAC-CGTAAGCACATTGTACAT-TATCATTCCC 653
consensus_8576#1 CCAAGCATCAAGTTGTTCTGTGAGCACA---TGTGAGTACATGATAAA---AACAACTCA 373
consensus_8576#2 CCAAGCATCAAGTTGTTCTGTGAGTACATGATAAAAACAACTCGGGTATCTGAGATCTTA 328
* ** ** *** ** * * * * *
consensus_8576#0 ATGGGTTGT---GCTTGG-AAGGTGAGATACTTGTGTATTGCCACTTTCATT-GATCTAT 708
consensus_8576#1 GGAATCTAA---GATCTT-AAGC--AGCTATTTG-ACTTACTAAGTCTGCAT-GTTCAAA 425
consensus_8576#2 GGCAGCTATTTGGCTTGGTGAGCCTATGTTTATGGGTTGGTCCAGTAGATACAGATCGAC 388
* * * ** * * ** * * * ** *
consensus_8576#0 GTT-GGCAT-CTGTACAGCGTGGTCCTAAATTTGTTTTGTAAACTGGTTGG-CGTTAGTT 765
consensus_8576#1 CTT-TCTAT-ATGGTTAC--TGAACTTAGTATTTGGCTGTAAATTATTC---TATCACTG 478
consensus_8576#2 GTTCTACATGCTGTCCATTGTTATTGTCGTTGTGTTTTTCATTCCTCTTGGGTATTCGAT 448
** ** ** * * * * * * * *
consensus_8576#0 TATTCATATATACATGACCTATGAGTCTNNNNNGTNTTATCGANNTG-TTATTCANTTGT 824
consensus_8576#1 TATT-ATGTATGTTTAACTCAAAGTTATTAGCGATCATGAGAAACTAATTATTCAT---- 533
consensus_8576#2 TATCGAAATATAGCTCGTTTTT--TTGCTTGCTGTTTTTTTTAACCAGCAATGCTTTCGA 506
*** * *** * * * * * ** *
consensus_8576#0 NTCNNNNNNNN--- 835
consensus_8576#1 --------------
consensus_8576#2 TTGATGTGTAAAAA 520
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||