These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1550 fasta sequence [CGCGCCTCGCCGTCAACCCACGCGGCGGCGCGGCGGCGAGTTCGCCGAAGCCATGCCGAGCTCGCCGAAGGTCTTCTCCTCGGCGACCACCTCCCGCCGCGCCACGCTCCGCCGCATCCTCTCCACCCCGGCCTTCTCCGCCGCCTGCCTCCTCTTCGGCCTCGCGGGCTTCCTCGCCGCCGCGCTCTCCTTCTCCTGGTCGCCGGGGAGCGCGCCGCGCGCCCGCTGCCCGGACTCCTCCCGCCCGCTCTCCGTCTCCGTCGCGTGGGACCGCCGGCCCGGGGATGCGTCCGCCGGGGCCGTGGCGGCGGCGGGCGCCGCCGTGGATCTCCCGGCGTCGCACGCCACCGGGTCGCGCGGGAGGCACAAGGTGATGGCCTTCGTCGGGATCTTCACCGGGTTCGGCTCCGTCGGGCGGCGACGCGCGCTGCGGCGGACGTGGCTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGAAGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGCAGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGAGTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGACTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCCATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCAT-CGAAGG-AAGGAATGTACAGGTGGTCCA-TCT-GCGGTGTCTGAA-TCTGACGACCGATAAATTATCGTCCCTACACGGACTACAGTCCAGGCAACATGATGACAGAATGGTTGACCACTGACGCCTCGAATGGATTGCCCGAGCATTCACTGACTTCACCAGGCACAATCATTGCCTGGGGCGCGCCGTCCAGGCAGCCAACACCGCCGATTTCAGGCGTCAGATACACGGGATCACAGAGCTCTTGTTCCACATTCTTGTCACATTCTCATTTGCTTATGACTTCAGAACTTGGTAGTATATTCTTGCCAGGAATGCTCATCATGTGCCCTTGTGAAGCAGTTTTGTTGTATAGTAGTAGAATGCATCACAAATTAACACACAGTTTCTATGCTTCGTACTTTTGAATATATTTTTTTAACCTTCGCTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK110688 [CGCGCCTCGCCGTCAACCCACGCGGCGGCGCGGCGGCGAGTTCGCCGAAGCCATGCCGAGCTCGCCGAAGGTCTTCTCCTCGGCGACCACCTCCCGCCGCGCCACGCTCCGCCGCATCCTCTCCACCCCGGCCTTCTCCGCCGCCTGCCTCCTCTTCGGCCTCGCGGGCTTCCTCGCCGCCGCGCTCTCCTTCTCCTGGTCGCCGGGGAGCGCGCCGCGCGCCCGCTGCCCGGACTCCTCCCGCCCGCTCTCCGTCTCCGTCGCGTGGGACCGCCGGCCCGGGGATGCGTCCGCCGGGGCCGTGGCGGCGGCGGGCGCCGCCGTGGATCTCCCGGCGTCGCACGCCACCGGGTCGCGCGGGAGGCACAAGGTGATGGCCTTCGTCGGGATCTTCACCGGGTTCGGCTCCGTCGGGCGGCGACGCGCGCTGCGGCGGACGTGGCTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGAAGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGCAGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGAGTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGACTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCCATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCAT CGAAGG AAGGAATGTACAGGTGGTCCA TCT GCGGTGTCTGAA TCTGACGACCGATAAATTATCGTCCCTACACGGACTACAGTCCAGGCAACATGATGACAGAATGGTTGACCACTGACGCCTCGAATGGATTGCCCGAGCATTCACTGACTTCACCAGGCACAATCATTGCCTGGGGCGCGCCGTCCAGGCAGCCAACACCGCCGATTTCAGGCGTCAGATACACGGGATCACAGAGCTCTTGTTCCACATTCTTGTCACATTCTCATTTGCTTATGACTTCAGAACTTGGTAGTATATTCTTGCCAGGAATGCTCATCATGTGCCCTTGTGAAGCAGTTTTGTTGTATAGTAGTAGAATGCATCACAAATTAACACACAGTTTCTATGCTTCGTACTTTTGAATATATTTTTTTAACCTT ] [-] EMBL CA763345 [ TGGGCCTATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCAT CGAAGG AAGGAATGTACAGGTGGTCCA TTT GCGGTGTTTGAA TCTGACGACCGATAAATTATCGTCCCTACACGGACTACAGTCCAGGCAACATGATGACAGAATGGTTGACCACTGACGCCTCGAATGGATTGCCCGAGCATTCACTGACTTCACCAGGCACAATCATTGCCTGGGGCGCGCCGTCCAGGCAGCCAACACCGCCGATTTCAGGCGTTAGATACACGGGATCACAGAGCTCTTGTTCCACATTCTTGTCACATTCTCATTTGCTTATGACTTCAGAACTTGGTAGTATATTCTTGCCAGGAATGCTCATCATGTGCCCTTGTGAAGCAGTTTTGTTGTATAGTAGTAGAATGCATCCCAAATTAACACCCAGTTTCTATGCTTCGTACTTTTGAATATATTTTTTTAACCTTCGCTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU055722 [ nTGGAGCTTCATCCNAAGGAAAGGAATGTACAGNTGGTCCATTCTGGCGGTGTCTGAATTCTGACGACCGATAAATTATCGTCCCTACACGGACTACAGTCCAGGCAACATGATGACAGAATGGTTGACCACTGACGCCTCGAATGGATTGCCCGAGCATTCACTGACTTCACCAGGCACAATCATTGCCTGGGGCGCGCCGTCCAGGCAGCCAACACCGCCGATTTCAGGCGTCAGATACACGGGATCACAGAGCTCTTGTTCCACATTCTTGTCACATTCTCATTTGCTTATGACTTCAGAACTTGGTAGTATATTCTTGCCAGGAATGCTCATCATGTGCCCTTGTGAAGCAGTTTTGTTGTATAGTAGTAGAATGCATCACAAATTAACACACAGTTTCTATGCTTCGTACTTTTGAATATATTTTTTTAACCTTCGCTATAAAAAA ] consensusID : consensus_8578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 737 fasta sequence [CTCGCAGAAGGTCTTCTCCTCGGCGACCACCTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGAAGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGCAGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGAGTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGACTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCTATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCATCGAAGGAAGGAATGTACAGGTGGTCCATCTGCGGTGTCTGAATCTGA] [+] EMBL OSA506741 [CTCGCAGAAGGTCTTCTCCTCGGCGACCACCTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGAAGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGCAGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGAGTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGACTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCTATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCATCGAAGGAAGGAATGTACAGGTGGTCCATCTGCGGTGTCTGAATCTGA] [+] EMBL AU055721 [ AGACCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCTATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8578#0 CGCGCCTCGCCGTCAACCCACGCGGCGGCGCGGCGGCGAGTTCGCCGAAGCCATGCCGAG 60 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 CTCGCCGAAGGTCTTCTCCTCGGCGACCACCTCCCGCCGCGCCACGCTCCGCCGCATCCT 120 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 CTCCACCCCGGCCTTCTCCGCCGCCTGCCTCCTCTTCGGCCTCGCGGGCTTCCTCGCCGC 180 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 CGCGCTCTCCTTCTCCTGGTCGCCGGGGAGCGCGCCGCGCGCCCGCTGCCCGGACTCCTC 240 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 CCGCCCGCTCTCCGTCTCCGTCGCGTGGGACCGCCGGCCCGGGGATGCGTCCGCCGGGGC 300 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 CGTGGCGGCGGCGGGCGCCGCCGTGGATCTCCCGGCGTCGCACGCCACCGGGTCGCGCGG 360 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 GAGGCACAAGGTGATGGCCTTCGTCGGGATCTTCACCGGGTTCGGCTCCGTCGGGCGGCG 420 consensus_8578#1 --------------------------------------------------CTCGCAGAAG 10 * * * consensus_8578#0 ACGCGCGCTGCGGCGGACGTGGCTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGA 480 consensus_8578#1 GTCTTCTCCTCGGCGACCAC--CTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGA 68 * * ***** * ************************************** consensus_8578#0 AGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGC 540 consensus_8578#1 AGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGC 128 ************************************************************ consensus_8578#0 AGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGA 600 consensus_8578#1 AGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGA 188 ************************************************************ consensus_8578#0 GTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGA 660 consensus_8578#1 GTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGA 248 ************************************************************ consensus_8578#0 CTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATT 720 consensus_8578#1 CTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATT 308 ************************************************************ consensus_8578#0 GCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCC 780 consensus_8578#1 GCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCC 368 ************************************************************ consensus_8578#0 TGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGA 840 consensus_8578#1 TGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGA 428 ************************************************************ consensus_8578#0 ATACTTCCTTCATGCATATGGGCCCATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTT 900 consensus_8578#1 ATACTTCCTTCATGCATATGGGCCTATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTT 488 ************************ *********************************** consensus_8578#0 GGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATC 960 consensus_8578#1 GGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATC 548 ************************************************************ consensus_8578#0 CTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTG 1020 consensus_8578#1 CTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTG 608 ************************************************************ consensus_8578#0 CACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGA 1080 consensus_8578#1 CACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGA 668 ************************************************************ consensus_8578#0 GGTAAAGATGCTGGAGCTTCATCGAAGGAAGGAATGTACAGGTGGTCCATCTGCGGTGTC 1140 consensus_8578#1 GGTAAAGATGCTGGAGCTTCATCGAAGGAAGGAATGTACAGGTGGTCCATCTGCGGTGTC 728 ************************************************************ consensus_8578#0 TGAATCTGACGACCGATAAATTATCGTCCCTACACGGACTACAGTCCAGGCAACATGATG 1200 consensus_8578#1 TGAATCTGA--------------------------------------------------- 737 ********* consensus_8578#0 ACAGAATGGTTGACCACTGACGCCTCGAATGGATTGCCCGAGCATTCACTGACTTCACCA 1260 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 GGCACAATCATTGCCTGGGGCGCGCCGTCCAGGCAGCCAACACCGCCGATTTCAGGCGTC 1320 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 AGATACACGGGATCACAGAGCTCTTGTTCCACATTCTTGTCACATTCTCATTTGCTTATG 1380 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 ACTTCAGAACTTGGTAGTATATTCTTGCCAGGAATGCTCATCATGTGCCCTTGTGAAGCA 1440 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 GTTTTGTTGTATAGTAGTAGAATGCATCACAAATTAACACACAGTTTCTATGCTTCGTAC 1500 consensus_8578#1 ------------------------------------------------------------ consensus_8578#0 TTTTGAATATATTTTTTTAACCTTCGCTAAAAAAAAAAAAAAAAAAAAAA 1550 consensus_8578#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||