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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1550 fasta sequence
[CGCGCCTCGCCGTCAACCCACGCGGCGGCGCGGCGGCGAGTTCGCCGAAGCCATGCCGAGCTCGCCGAAGGTCTTCTCCTCGGCGACCACCTCCCGCCGCGCCACGCTCCGCCGCATCCTCTCCACCCCGGCCTTCTCCGCCGCCTGCCTCCTCTTCGGCCTCGCGGGCTTCCTCGCCGCCGCGCTCTCCTTCTCCTGGTCGCCGGGGAGCGCGCCGCGCGCCCGCTGCCCGGACTCCTCCCGCCCGCTCTCCGTCTCCGTCGCGTGGGACCGCCGGCCCGGGGATGCGTCCGCCGGGGCCGTGGCGGCGGCGGGCGCCGCCGTGGATCTCCCGGCGTCGCACGCCACCGGGTCGCGCGGGAGGCACAAGGTGATGGCCTTCGTCGGGATCTTCACCGGGTTCGGCTCCGTCGGGCGGCGACGCGCGCTGCGGCGGACGTGGCTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGAAGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGCAGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGAGTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGACTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCCATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCAT-CGAAGG-AAGGAATGTACAGGTGGTCCA-TCT-GCGGTGTCTGAA-TCTGACGACCGATAAATTATCGTCCCTACACGGACTACAGTCCAGGCAACATGATGACAGAATGGTTGACCACTGACGCCTCGAATGGATTGCCCGAGCATTCACTGACTTCACCAGGCACAATCATTGCCTGGGGCGCGCCGTCCAGGCAGCCAACACCGCCGATTTCAGGCGTCAGATACACGGGATCACAGAGCTCTTGTTCCACATTCTTGTCACATTCTCATTTGCTTATGACTTCAGAACTTGGTAGTATATTCTTGCCAGGAATGCTCATCATGTGCCCTTGTGAAGCAGTTTTGTTGTATAGTAGTAGAATGCATCACAAATTAACACACAGTTTCTATGCTTCGTACTTTTGAATATATTTTTTTAACCTTCGCTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK110688 [CGCGCCTCGCCGTCAACCCACGCGGCGGCGCGGCGGCGAGTTCGCCGAAGCCATGCCGAGCTCGCCGAAGGTCTTCTCCTCGGCGACCACCTCCCGCCGCGCCACGCTCCGCCGCATCCTCTCCACCCCGGCCTTCTCCGCCGCCTGCCTCCTCTTCGGCCTCGCGGGCTTCCTCGCCGCCGCGCTCTCCTTCTCCTGGTCGCCGGGGAGCGCGCCGCGCGCCCGCTGCCCGGACTCCTCCCGCCCGCTCTCCGTCTCCGTCGCGTGGGACCGCCGGCCCGGGGATGCGTCCGCCGGGGCCGTGGCGGCGGCGGGCGCCGCCGTGGATCTCCCGGCGTCGCACGCCACCGGGTCGCGCGGGAGGCACAAGGTGATGGCCTTCGTCGGGATCTTCACCGGGTTCGGCTCCGTCGGGCGGCGACGCGCGCTGCGGCGGACGTGGCTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGAAGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGCAGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGAGTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGACTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCCATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCAT CGAAGG AAGGAATGTACAGGTGGTCCA TCT GCGGTGTCTGAA TCTGACGACCGATAAATTATCGTCCCTACACGGACTACAGTCCAGGCAACATGATGACAGAATGGTTGACCACTGACGCCTCGAATGGATTGCCCGAGCATTCACTGACTTCACCAGGCACAATCATTGCCTGGGGCGCGCCGTCCAGGCAGCCAACACCGCCGATTTCAGGCGTCAGATACACGGGATCACAGAGCTCTTGTTCCACATTCTTGTCACATTCTCATTTGCTTATGACTTCAGAACTTGGTAGTATATTCTTGCCAGGAATGCTCATCATGTGCCCTTGTGAAGCAGTTTTGTTGTATAGTAGTAGAATGCATCACAAATTAACACACAGTTTCTATGCTTCGTACTTTTGAATATATTTTTTTAACCTT ]
[-] EMBL CA763345 [ TGGGCCTATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCAT CGAAGG AAGGAATGTACAGGTGGTCCA TTT GCGGTGTTTGAA TCTGACGACCGATAAATTATCGTCCCTACACGGACTACAGTCCAGGCAACATGATGACAGAATGGTTGACCACTGACGCCTCGAATGGATTGCCCGAGCATTCACTGACTTCACCAGGCACAATCATTGCCTGGGGCGCGCCGTCCAGGCAGCCAACACCGCCGATTTCAGGCGTTAGATACACGGGATCACAGAGCTCTTGTTCCACATTCTTGTCACATTCTCATTTGCTTATGACTTCAGAACTTGGTAGTATATTCTTGCCAGGAATGCTCATCATGTGCCCTTGTGAAGCAGTTTTGTTGTATAGTAGTAGAATGCATCCCAAATTAACACCCAGTTTCTATGCTTCGTACTTTTGAATATATTTTTTTAACCTTCGCTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU055722 [ nTGGAGCTTCATCCNAAGGAAAGGAATGTACAGNTGGTCCATTCTGGCGGTGTCTGAATTCTGACGACCGATAAATTATCGTCCCTACACGGACTACAGTCCAGGCAACATGATGACAGAATGGTTGACCACTGACGCCTCGAATGGATTGCCCGAGCATTCACTGACTTCACCAGGCACAATCATTGCCTGGGGCGCGCCGTCCAGGCAGCCAACACCGCCGATTTCAGGCGTCAGATACACGGGATCACAGAGCTCTTGTTCCACATTCTTGTCACATTCTCATTTGCTTATGACTTCAGAACTTGGTAGTATATTCTTGCCAGGAATGCTCATCATGTGCCCTTGTGAAGCAGTTTTGTTGTATAGTAGTAGAATGCATCACAAATTAACACACAGTTTCTATGCTTCGTACTTTTGAATATATTTTTTTAACCTTCGCTATAAAAAA ]
consensusID : consensus_8578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 737 fasta sequence
[CTCGCAGAAGGTCTTCTCCTCGGCGACCACCTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGAAGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGCAGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGAGTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGACTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCTATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCATCGAAGGAAGGAATGTACAGGTGGTCCATCTGCGGTGTCTGAATCTGA]
[+] EMBL OSA506741 [CTCGCAGAAGGTCTTCTCCTCGGCGACCACCTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGAAGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGCAGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGAGTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGACTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCTATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGAGGTAAAGATGCTGGAGCTTCATCGAAGGAAGGAATGTACAGGTGGTCCATCTGCGGTGTCTGAATCTGA]
[+] EMBL AU055721 [ AGACCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCTATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8578#0 CGCGCCTCGCCGTCAACCCACGCGGCGGCGCGGCGGCGAGTTCGCCGAAGCCATGCCGAG 60
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 CTCGCCGAAGGTCTTCTCCTCGGCGACCACCTCCCGCCGCGCCACGCTCCGCCGCATCCT 120
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 CTCCACCCCGGCCTTCTCCGCCGCCTGCCTCCTCTTCGGCCTCGCGGGCTTCCTCGCCGC 180
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 CGCGCTCTCCTTCTCCTGGTCGCCGGGGAGCGCGCCGCGCGCCCGCTGCCCGGACTCCTC 240
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 CCGCCCGCTCTCCGTCTCCGTCGCGTGGGACCGCCGGCCCGGGGATGCGTCCGCCGGGGC 300
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 CGTGGCGGCGGCGGGCGCCGCCGTGGATCTCCCGGCGTCGCACGCCACCGGGTCGCGCGG 360
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 GAGGCACAAGGTGATGGCCTTCGTCGGGATCTTCACCGGGTTCGGCTCCGTCGGGCGGCG 420
consensus_8578#1 --------------------------------------------------CTCGCAGAAG 10
* * *
consensus_8578#0 ACGCGCGCTGCGGCGGACGTGGCTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGA 480
consensus_8578#1 GTCTTCTCCTCGGCGACCAC--CTCCCCGCGGATCGGCAGGGTCTCCTTCGATTGGAGGA 68
* * ***** * **************************************
consensus_8578#0 AGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGC 540
consensus_8578#1 AGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCTAAGATGGC 128
************************************************************
consensus_8578#0 AGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGA 600
consensus_8578#1 AGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGGAGGA 188
************************************************************
consensus_8578#0 GTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGA 660
consensus_8578#1 GTATAGCAAGCTTCCGTACAAAACGTTAGCTTACTTTAAGGCTGCGTATGCATTGTATGA 248
************************************************************
consensus_8578#0 CTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATT 720
consensus_8578#1 CTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGATAGACTTTCATT 308
************************************************************
consensus_8578#0 GCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCC 780
consensus_8578#1 GCTTTTGGCTAAGGAGCGTTCACATACACAAACATACATTGGATGCATGAAGAAGGGGCC 368
************************************************************
consensus_8578#0 TGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGA 840
consensus_8578#1 TGTTTTTACTGACCCAAAGCTGAAATGGTATGAGCCACAATCCTTTTTGCTCGGATCAGA 428
************************************************************
consensus_8578#0 ATACTTCCTTCATGCATATGGGCCCATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTT 900
consensus_8578#1 ATACTTCCTTCATGCATATGGGCCTATTTACGCTTTATCAGCCGATGTGGTGGCAAGCTT 488
************************ ***********************************
consensus_8578#0 GGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATC 960
consensus_8578#1 GGTTGCCTTGAGGAACAACAGTTTCCGTATGTTCAGCAATGAGGATGTTACTATTGGATC 548
************************************************************
consensus_8578#0 CTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTG 1020
consensus_8578#1 CTGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTG 608
************************************************************
consensus_8578#0 CACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGA 1080
consensus_8578#1 CACAGAGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTCAGGGCTATGCCACCCGGA 668
************************************************************
consensus_8578#0 GGTAAAGATGCTGGAGCTTCATCGAAGGAAGGAATGTACAGGTGGTCCATCTGCGGTGTC 1140
consensus_8578#1 GGTAAAGATGCTGGAGCTTCATCGAAGGAAGGAATGTACAGGTGGTCCATCTGCGGTGTC 728
************************************************************
consensus_8578#0 TGAATCTGACGACCGATAAATTATCGTCCCTACACGGACTACAGTCCAGGCAACATGATG 1200
consensus_8578#1 TGAATCTGA--------------------------------------------------- 737
*********
consensus_8578#0 ACAGAATGGTTGACCACTGACGCCTCGAATGGATTGCCCGAGCATTCACTGACTTCACCA 1260
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 GGCACAATCATTGCCTGGGGCGCGCCGTCCAGGCAGCCAACACCGCCGATTTCAGGCGTC 1320
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 AGATACACGGGATCACAGAGCTCTTGTTCCACATTCTTGTCACATTCTCATTTGCTTATG 1380
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 ACTTCAGAACTTGGTAGTATATTCTTGCCAGGAATGCTCATCATGTGCCCTTGTGAAGCA 1440
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 GTTTTGTTGTATAGTAGTAGAATGCATCACAAATTAACACACAGTTTCTATGCTTCGTAC 1500
consensus_8578#1 ------------------------------------------------------------
consensus_8578#0 TTTTGAATATATTTTTTTAACCTTCGCTAAAAAAAAAAAAAAAAAAAAAA 1550
consensus_8578#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||