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Oryza sativa
cluster # 8580 cluster # 8580       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8580#0 length = 974 sequences # 2  
consensus_8580#1 length = 457 sequences # 2  
consensus_8580#2 length = 424 sequences # 1  

consensusID : consensus_8580#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 974
fasta sequence
                              [GGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCGGCGACGGCGAGGGCCTCGATGTGCAACGGCAGCGGCGCGGCGGCCTCGATGCGCCTCGATATGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGATGGCGGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAACTAAAATAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGAGAAAGTCTCGTGTACTTTGAGTTACGCATTGTTTTTTTCCTCCTGAATCCTTCCTCTATTCATATTAAAGTTACAAACTCAAATTGGGAATCTCCTCCTGGTATTTCTCTGTTCAGATTAAAGCAGCAAACTCAAATTGGGTGCCTCCGAGCAAGGCAGGCTCGATGCACGATGGCAGCGGCACGGCGGCCTCGATGCGCGACGGCATCAGCAGGCTCGATGCACGACGGCGGCAACAGCCTCGATGCGTGACGGCAGCGTGGCGGCCTCGATGCGCGACGGTGGCGGCGGCGCGGCGGCCTCGATGCACGACGGCGGCAACAACCTCGATGCGAGACGGCGGCGCGATGGCCTCGATGGGCGACGGCGGCAGATGGAAGAGAGGAGACCTCATTTTTGTTAGCCCGATCATACCCCTGTTAAACCAACGGTTAGATTAGATTGGTACCTCGTGATACCTCTTTAAGGATGGGAAAAATGCTCTATTATAAAAGATGCTTGTTTCATCTCAAATCATAGGTTAATCATTGTGTCATGTACTGCAAGCCTCCAAATTTGCAATGCAGCTCCCTTGTCTTAGAA]

[+] EMBL AK108675             [GGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCGGCGACGGCGAGGGCCTCGATGTGCAACGGCAGCGGCGCGGCGGCCTCGATGCGCCTCGATATGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGATGGCGGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAACTAAAATAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGAGAAAGTCTCGTGTACTTTGAGTTACGCATTGTTTTTTTCCTCCTGAATCCTTCCTCTATTCATATTAAAGTTACAAACTCAAATTGGGAATCTCCTCCTGGTATTTCTCTGTTCAGATTAAAGCAGCAAACTCAAATTGGGTGCCTCCGAGCAAGGCAGGCTCGATGCACGATGGCAGCGGCACGGCGGCCTCGATGCGCGACGGCATCAGCAGGCTCGATGCACGACGGCGGCAACAGCCTCGATGCGTGACGGCAGCGTGGCGGCCTCGATGCGCGACGGTGGCGGCGGCGCGGCGGCCTCGATGCACGACGGCGGCAACAACCTCGATGCGAGACGGCGGCGCGATGGCCTCGATGGGCGACGGCGGCAGATGGAAGAGAGGAGACCTCATTTTTGTTAGCCCGATCATACCCCTGTTAAACCAACGGTTAGATTAGATTGGTACCTCGTGATACCTCTTTAAGGATGGGAAAAATGCTCTATTATAAAAGATGCTTGTTTCATCTCAAATCATAGGTTAATCATTGTGTCATGTACTGCAAGCCTCCAAATTTGCAATGCAGCTCCCTTGTCTTAGAA]
[-] EMBL CB967478             [                                                                                                                            CGGCATGGCGGCCTCGATGCGCGATGGCGGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAACTAAAAAAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGAGAAAGTCTCGTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]


>consensus_8580#0 GGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCGGCGACGGC GAGGGCCTCGATGTGCAACGGCAGCGGCGCGGCGGCCTCGATGCGCCTCGATATGCGACG GCAGCGGCATGGCGGCCTCGATGCGCGATGGCGGCGGCAGCGGCGGCCTCTCTTTTCCTC CTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCAACGACGGCCTGTCTCTTCCTCCTTTC TGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTA CCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAACTAAAATAACAAGGTTCAGAAA TTGGATCTGCTGTAAATAGTATCGATTCATGAGAAAGTCTCGTGTACTTTGAGTTACGCA TTGTTTTTTTCCTCCTGAATCCTTCCTCTATTCATATTAAAGTTACAAACTCAAATTGGG AATCTCCTCCTGGTATTTCTCTGTTCAGATTAAAGCAGCAAACTCAAATTGGGTGCCTCC GAGCAAGGCAGGCTCGATGCACGATGGCAGCGGCACGGCGGCCTCGATGCGCGACGGCAT CAGCAGGCTCGATGCACGACGGCGGCAACAGCCTCGATGCGTGACGGCAGCGTGGCGGCC TCGATGCGCGACGGTGGCGGCGGCGCGGCGGCCTCGATGCACGACGGCGGCAACAACCTC GATGCGAGACGGCGGCGCGATGGCCTCGATGGGCGACGGCGGCAGATGGAAGAGAGGAGA CCTCATTTTTGTTAGCCCGATCATACCCCTGTTAAACCAACGGTTAGATTAGATTGGTAC CTCGTGATACCTCTTTAAGGATGGGAAAAATGCTCTATTATAAAAGATGCTTGTTTCATC TCAAATCATAGGTTAATCATTGTGTCATGTACTGCAAGCCTCCAAATTTGCAATGCAGCT CCCTTGTCTTAGAA



consensusID : consensus_8580#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 457
fasta sequence
                              [CGAGAGGGAAAAATCGTCGGGGAAGAGCAGCGAGAGATGGCGGCGAGGGCACGGGCACATTCCCGGCGGCGG-CTCGATGCGCGACGGCAGCAGC-CGACGGCCTNTGATGCGCGATGGCAGCAGCTGTGGGCTCGAGGCGGCA--GGCCTCGATGCTCGGCGGCA--GGCGANTNCGATGCGCGGCGGC-GANGGGGCGGCAACGGCGGCCTCTTCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGG-A--NACGGCCTTCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAGTTTTGCTGAACCAAATGTAAATNGCTAAATNGTTGATTACCAGCTTACTGTTGAATTTGCAAGTTTCGTATTGATGAACTAAAAAACAAAGGTTCAGAAATTGGANCTCCTGTAAATAATATCGATTCAAGTCTGGTGTACTTTGAGTTAAAAAAAAAA]

[+] EMBL C29010               [CGAGAGGGAAAAATCGTCGGGGAAGAGCAGCGAGAGATGGCGGCGAGGGCACGGGCACATTCCCGGCGGCGG CTCGATGCGCGACGGCAGCAGC CGACGGCCTNTGATGCGCGATGGCAGCAGCTGTGGGCTCGAGGCGGCA  GGCCTCGATGCTCGGCGGCA  GGCGANTNCGATGCGCGGCGGC GANGGGGCGGCAACGGCGGCCTCTTCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGG A  NACGGCCTTCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAGTTTTGCTGAACCAAATGTAAATNGCTAAATNGTTGATTACCAGCTTACTGTTGAATTTGCAAGTTTCGTATTGATGAACTAAAAAACAAAGGTTCAGAAATTGGANCTCCTGTAAATAATATCGATT                                ]
[+] EMBL AU172378             [                           CAGCGAGAGATGGCGGCGAGGGCACGGGCACATTCCCGGCGGCGGCCTCGATGCGCGACGGCAGCAGCGCGGCGGCCT TGATGCGCGATGGCAGCAGCTGTGGGCTCGAGGCGGCAGCGGCCTCGATGCTCGGCGGCAGCGGCGAGCTCGATGCGCGGCGGCGGAGGCGGCGGCAACGGCGGCCTC TCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGGCAGCGACGGCC TCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAG TTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTGTTGAA TTGCAAGTTTCGTATTGATGAACTAAAAAAC AAGGTTCAGAAATTGGATCTGCTGTAAATAATATCGATTCAAGTCTGGTGTACTTTGAGTTAAAAAAAAAA]


>consensus_8580#1 CGAGAGGGAAAAATCGTCGGGGAAGAGCAGCGAGAGATGGCGGCGAGGGCACGGGCACAT TCCCGGCGGCGGCTCGATGCGCGACGGCAGCAGCCGACGGCCTNTGATGCGCGATGGCAG CAGCTGTGGGCTCGAGGCGGCAGGCCTCGATGCTCGGCGGCAGGCGANTNCGATGCGCGG CGGCGANGGGGCGGCAACGGCGGCCTCTTCTCTTCCTCCTTTCTGCTGTGAATATTGTTG ACGGCCGCGGANACGGCCTTCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAGTT TTGCTGAACCAAATGTAAATNGCTAAATNGTTGATTACCAGCTTACTGTTGAATTTGCAA GTTTCGTATTGATGAACTAAAAAACAAAGGTTCAGAAATTGGANCTCCTGTAAATAATAT CGATTCAAGTCTGGTGTACTTTGAGTTAAAAAAAAAA



consensusID : consensus_8580#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence
                              [TCCTTCCCTTTTCACGAGAGGAAAACATTGCTGGGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCAGGACGGCGAGGACCTCGATGTGCGACGGCAGCGGCGCGGCGGGCTCGACGGGCGACGGCCTCGATGTGCGACGGCGGCGGCGCGGCGGCCTGGATGCGCCTCGATGTGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGACGGCAGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTATGAATTTTGTTGACGGCGGTGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAATAAAAAAA]

[+] EMBL AK063213             [TCCTTCCCTTTTCACGAGAGGAAAACATTGCTGGGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCAGGACGGCGAGGACCTCGATGTGCGACGGCAGCGGCGCGGCGGGCTCGACGGGCGACGGCCTCGATGTGCGACGGCGGCGGCGCGGCGGCCTGGATGCGCCTCGATGTGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGACGGCAGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTATGAATTTTGTTGACGGCGGTGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAATAAAAAAA]


>consensus_8580#2 TCCTTCCCTTTTCACGAGAGGAAAACATTGCTGGGGAAGAGCAGCGAGAGATGGCGGCAA GAGGCAGGGGCAGCGAGAGATTGCAGGACGGCGAGGACCTCGATGTGCGACGGCAGCGGC GCGGCGGGCTCGACGGGCGACGGCCTCGATGTGCGACGGCGGCGGCGCGGCGGCCTGGAT GCGCCTCGATGTGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGACGGCAGCGGCAGCG GCGGCCTCTCTTTTCCTCCTTTCTGCTATGAATTTTGTTGACGGCGGTGGCAACGACGGC CTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAA TGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAATAAA AAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8580#0      ---------------------------------GGGAAGAGCAGCGAGAGATGGCGGCAA 27
consensus_8580#2      TCCTTCCCTTTTCACGAGAGGAAAACATTGCTGGGGAAGAGCAGCGAGAGATGGCGGCAA 60
consensus_8580#1      --------------CGAGAGGGAAAAATCGTCGGGGAAGAGCAGCGAGAGATGGCGGCGA 46
                                                       ************************* *

consensus_8580#0      GAGGCAGGGGCA-GCGAGAGATTGCGG---------------------CGACGGC----- 60
consensus_8580#2      GAGGCAGGGGCA-GCGAGAGATTGCAGGACGGCGAGGACCTCGATGTGCGACGGCAGCGG 119
consensus_8580#1      G-GGCACGGGCACATTCCCGGCGGCGG------------CTCGATGCGCGACGGCAGCAG 93
                      * **** *****       *   ** *                     *******     

consensus_8580#0      -------------------GAGGGCCTC-GATGTGCAACGGCAGCGGCGCGGCGGCCTCG 100
consensus_8580#2      CGCGGCGGGCTCGACGGGCGACGGCCTC-GATGTGCGACGGCGGCGGCGCGGCGGCCTGG 178
consensus_8580#1      C-----------------CGACGGCCTNTGATGCGCGATGGCAGCAGC--TGTGGGCTCG 134
                                         ** *****  **** ** * *** ** **   * ** ** *

consensus_8580#0      ATGCGCCTCGATATGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGATGGCG-----GC 155
consensus_8580#2      ATGCGCCTCGATGTGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGACGGCA-----GC 233
consensus_8580#1      AGGCGGCAGGCCTCGATGCT-CGGCGGCA-GGCGANTNCGATGCGCGGCGGCGANGGGGC 192
                      * *** *  *    *   *  * ****** ****    *********  ***      **

consensus_8580#0      GGCAGCGGCGGCCTCT-CTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCA 214
consensus_8580#2      GGCAGCGGCGGCCTCT-CTTTTCCTCCTTTCTGCTATGAATTTTGTTGACGGCGGTGGCA 292
consensus_8580#1      GGCAACGGCGGCCTCTTCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGGAN 252
                      **** *********** ** *************** ***** *********** * **  

consensus_8580#0      ACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTT-GCTGAACC 273
consensus_8580#2      ACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTT-GCTGAACC 351
consensus_8580#1      ACGGC--CTTCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAGTTTTGCTGAACC 310
                      *** *  * * ************** ********************  *** ********

consensus_8580#0      AAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATT-GCAAGTTTCGTATT 332
consensus_8580#2      AAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATT-GCAAGTTTCGTATT 410
consensus_8580#1      AAATGTAAATNGCTAAATNGTTGATTACCAGCTTACTGTTGAATTTGCAAGTTTCGTATT 370
                      ********** ******* ****************** ******* **************

consensus_8580#0      GATGAACTAAAATAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGA 392
consensus_8580#2      GATGAATAAAAAAA---------------------------------------------- 424
consensus_8580#1      GATGAACTAAAAAACAAAGGTTCAGAAATTGGANCTCCTGTAAATAATATCGATTCA--- 427
                      ******  **** *                                              

consensus_8580#0      GAAAGTCTCGTGTACTTTGAGTTACGCATTGTTTTTTTCCTCCTGAATCCTTCCTCTATT 452
consensus_8580#2      ------------------------------------------------------------
consensus_8580#1      ---AGTCTGGTGTACTTTGAGTTAAAAAAAAAA--------------------------- 457
                                                                                  

consensus_8580#0      CATATTAAAGTTACAAACTCAAATTGGGAATCTCCTCCTGGTATTTCTCTGTTCAGATTA 512
consensus_8580#2      ------------------------------------------------------------
consensus_8580#1      ------------------------------------------------------------
                                                                                  

consensus_8580#0      AAGCAGCAAACTCAAATTGGGTGCCTCCGAGCAAGGCAGGCTCGATGCACGATGGCAGCG 572
consensus_8580#2      ------------------------------------------------------------
consensus_8580#1      ------------------------------------------------------------
                                                                                  

consensus_8580#0      GCACGGCGGCCTCGATGCGCGACGGCATCAGCAGGCTCGATGCACGACGGCGGCAACAGC 632
consensus_8580#2      ------------------------------------------------------------
consensus_8580#1      ------------------------------------------------------------
                                                                                  

consensus_8580#0      CTCGATGCGTGACGGCAGCGTGGCGGCCTCGATGCGCGACGGTGGCGGCGGCGCGGCGGC 692
consensus_8580#2      ------------------------------------------------------------
consensus_8580#1      ------------------------------------------------------------
                                                                                  

consensus_8580#0      CTCGATGCACGACGGCGGCAACAACCTCGATGCGAGACGGCGGCGCGATGGCCTCGATGG 752
consensus_8580#2      ------------------------------------------------------------
consensus_8580#1      ------------------------------------------------------------
                                                                                  

consensus_8580#0      GCGACGGCGGCAGATGGAAGAGAGGAGACCTCATTTTTGTTAGCCCGATCATACCCCTGT 812
consensus_8580#2      ------------------------------------------------------------
consensus_8580#1      ------------------------------------------------------------
                                                                                  

consensus_8580#0      TAAACCAACGGTTAGATTAGATTGGTACCTCGTGATACCTCTTTAAGGATGGGAAAAATG 872
consensus_8580#2      ------------------------------------------------------------
consensus_8580#1      ------------------------------------------------------------
                                                                                  

consensus_8580#0      CTCTATTATAAAAGATGCTTGTTTCATCTCAAATCATAGGTTAATCATTGTGTCATGTAC 932
consensus_8580#2      ------------------------------------------------------------
consensus_8580#1      ------------------------------------------------------------
                                                                                  

consensus_8580#0      TGCAAGCCTCCAAATTTGCAATGCAGCTCCCTTGTCTTAGAA 974
consensus_8580#2      ------------------------------------------
consensus_8580#1      ------------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)