These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 974 fasta sequence [GGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCGGCGACGGCGAGGGCCTCGATGTGCAACGGCAGCGGCGCGGCGGCCTCGATGCGCCTCGATATGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGATGGCGGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAACTAAAATAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGAGAAAGTCTCGTGTACTTTGAGTTACGCATTGTTTTTTTCCTCCTGAATCCTTCCTCTATTCATATTAAAGTTACAAACTCAAATTGGGAATCTCCTCCTGGTATTTCTCTGTTCAGATTAAAGCAGCAAACTCAAATTGGGTGCCTCCGAGCAAGGCAGGCTCGATGCACGATGGCAGCGGCACGGCGGCCTCGATGCGCGACGGCATCAGCAGGCTCGATGCACGACGGCGGCAACAGCCTCGATGCGTGACGGCAGCGTGGCGGCCTCGATGCGCGACGGTGGCGGCGGCGCGGCGGCCTCGATGCACGACGGCGGCAACAACCTCGATGCGAGACGGCGGCGCGATGGCCTCGATGGGCGACGGCGGCAGATGGAAGAGAGGAGACCTCATTTTTGTTAGCCCGATCATACCCCTGTTAAACCAACGGTTAGATTAGATTGGTACCTCGTGATACCTCTTTAAGGATGGGAAAAATGCTCTATTATAAAAGATGCTTGTTTCATCTCAAATCATAGGTTAATCATTGTGTCATGTACTGCAAGCCTCCAAATTTGCAATGCAGCTCCCTTGTCTTAGAA] [+] EMBL AK108675 [GGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCGGCGACGGCGAGGGCCTCGATGTGCAACGGCAGCGGCGCGGCGGCCTCGATGCGCCTCGATATGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGATGGCGGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAACTAAAATAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGAGAAAGTCTCGTGTACTTTGAGTTACGCATTGTTTTTTTCCTCCTGAATCCTTCCTCTATTCATATTAAAGTTACAAACTCAAATTGGGAATCTCCTCCTGGTATTTCTCTGTTCAGATTAAAGCAGCAAACTCAAATTGGGTGCCTCCGAGCAAGGCAGGCTCGATGCACGATGGCAGCGGCACGGCGGCCTCGATGCGCGACGGCATCAGCAGGCTCGATGCACGACGGCGGCAACAGCCTCGATGCGTGACGGCAGCGTGGCGGCCTCGATGCGCGACGGTGGCGGCGGCGCGGCGGCCTCGATGCACGACGGCGGCAACAACCTCGATGCGAGACGGCGGCGCGATGGCCTCGATGGGCGACGGCGGCAGATGGAAGAGAGGAGACCTCATTTTTGTTAGCCCGATCATACCCCTGTTAAACCAACGGTTAGATTAGATTGGTACCTCGTGATACCTCTTTAAGGATGGGAAAAATGCTCTATTATAAAAGATGCTTGTTTCATCTCAAATCATAGGTTAATCATTGTGTCATGTACTGCAAGCCTCCAAATTTGCAATGCAGCTCCCTTGTCTTAGAA] [-] EMBL CB967478 [ CGGCATGGCGGCCTCGATGCGCGATGGCGGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAACTAAAAAAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGAGAAAGTCTCGTGTA ] consensusID : consensus_8580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 457 fasta sequence [CGAGAGGGAAAAATCGTCGGGGAAGAGCAGCGAGAGATGGCGGCGAGGGCACGGGCACATTCCCGGCGGCGG-CTCGATGCGCGACGGCAGCAGC-CGACGGCCTNTGATGCGCGATGGCAGCAGCTGTGGGCTCGAGGCGGCA--GGCCTCGATGCTCGGCGGCA--GGCGANTNCGATGCGCGGCGGC-GANGGGGCGGCAACGGCGGCCTCTTCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGG-A--NACGGCCTTCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAGTTTTGCTGAACCAAATGTAAATNGCTAAATNGTTGATTACCAGCTTACTGTTGAATTTGCAAGTTTCGTATTGATGAACTAAAAAACAAAGGTTCAGAAATTGGANCTCCTGTAAATAATATCGATTCAAGTCTGGTGTACTTTGAGTTAAAAAAAAAA] [+] EMBL C29010 [CGAGAGGGAAAAATCGTCGGGGAAGAGCAGCGAGAGATGGCGGCGAGGGCACGGGCACATTCCCGGCGGCGG CTCGATGCGCGACGGCAGCAGC CGACGGCCTNTGATGCGCGATGGCAGCAGCTGTGGGCTCGAGGCGGCA GGCCTCGATGCTCGGCGGCA GGCGANTNCGATGCGCGGCGGC GANGGGGCGGCAACGGCGGCCTCTTCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGG A NACGGCCTTCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAGTTTTGCTGAACCAAATGTAAATNGCTAAATNGTTGATTACCAGCTTACTGTTGAATTTGCAAGTTTCGTATTGATGAACTAAAAAACAAAGGTTCAGAAATTGGANCTCCTGTAAATAATATCGATT ] [+] EMBL AU172378 [ CAGCGAGAGATGGCGGCGAGGGCACGGGCACATTCCCGGCGGCGGCCTCGATGCGCGACGGCAGCAGCGCGGCGGCCT TGATGCGCGATGGCAGCAGCTGTGGGCTCGAGGCGGCAGCGGCCTCGATGCTCGGCGGCAGCGGCGAGCTCGATGCGCGGCGGCGGAGGCGGCGGCAACGGCGGCCTC TCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGGCAGCGACGGCC TCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAG TTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTGTTGAA TTGCAAGTTTCGTATTGATGAACTAAAAAAC AAGGTTCAGAAATTGGATCTGCTGTAAATAATATCGATTCAAGTCTGGTGTACTTTGAGTTAAAAAAAAAA] consensusID : consensus_8580#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [TCCTTCCCTTTTCACGAGAGGAAAACATTGCTGGGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCAGGACGGCGAGGACCTCGATGTGCGACGGCAGCGGCGCGGCGGGCTCGACGGGCGACGGCCTCGATGTGCGACGGCGGCGGCGCGGCGGCCTGGATGCGCCTCGATGTGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGACGGCAGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTATGAATTTTGTTGACGGCGGTGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAATAAAAAAA] [+] EMBL AK063213 [TCCTTCCCTTTTCACGAGAGGAAAACATTGCTGGGGAAGAGCAGCGAGAGATGGCGGCAAGAGGCAGGGGCAGCGAGAGATTGCAGGACGGCGAGGACCTCGATGTGCGACGGCAGCGGCGCGGCGGGCTCGACGGGCGACGGCCTCGATGTGCGACGGCGGCGGCGCGGCGGCCTGGATGCGCCTCGATGTGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGACGGCAGCGGCAGCGGCGGCCTCTCTTTTCCTCCTTTCTGCTATGAATTTTGTTGACGGCGGTGGCAACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTTGCTGAACCAAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATTGCAAGTTTCGTATTGATGAATAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8580#0 ---------------------------------GGGAAGAGCAGCGAGAGATGGCGGCAA 27 consensus_8580#2 TCCTTCCCTTTTCACGAGAGGAAAACATTGCTGGGGAAGAGCAGCGAGAGATGGCGGCAA 60 consensus_8580#1 --------------CGAGAGGGAAAAATCGTCGGGGAAGAGCAGCGAGAGATGGCGGCGA 46 ************************* * consensus_8580#0 GAGGCAGGGGCA-GCGAGAGATTGCGG---------------------CGACGGC----- 60 consensus_8580#2 GAGGCAGGGGCA-GCGAGAGATTGCAGGACGGCGAGGACCTCGATGTGCGACGGCAGCGG 119 consensus_8580#1 G-GGCACGGGCACATTCCCGGCGGCGG------------CTCGATGCGCGACGGCAGCAG 93 * **** ***** * ** * ******* consensus_8580#0 -------------------GAGGGCCTC-GATGTGCAACGGCAGCGGCGCGGCGGCCTCG 100 consensus_8580#2 CGCGGCGGGCTCGACGGGCGACGGCCTC-GATGTGCGACGGCGGCGGCGCGGCGGCCTGG 178 consensus_8580#1 C-----------------CGACGGCCTNTGATGCGCGATGGCAGCAGC--TGTGGGCTCG 134 ** ***** **** ** * *** ** ** * ** ** * consensus_8580#0 ATGCGCCTCGATATGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGATGGCG-----GC 155 consensus_8580#2 ATGCGCCTCGATGTGCGACGGCAGCGGCATGGCGGCCTCGATGCGCGACGGCA-----GC 233 consensus_8580#1 AGGCGGCAGGCCTCGATGCT-CGGCGGCA-GGCGANTNCGATGCGCGGCGGCGANGGGGC 192 * *** * * * * * ****** **** ********* *** ** consensus_8580#0 GGCAGCGGCGGCCTCT-CTTTTCCTCCTTTCTGCTGTGAATTTTGTTGACGGCGGCGGCA 214 consensus_8580#2 GGCAGCGGCGGCCTCT-CTTTTCCTCCTTTCTGCTATGAATTTTGTTGACGGCGGTGGCA 292 consensus_8580#1 GGCAACGGCGGCCTCTTCTCTTCCTCCTTTCTGCTGTGAATATTGTTGACGGCCGCGGAN 252 **** *********** ** *************** ***** *********** * ** consensus_8580#0 ACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTT-GCTGAACC 273 consensus_8580#2 ACGACGGCCTGTCTCTTCCTCCTTTCTGCTGTGAATTTTGTTGTTGGATTT-GCTGAACC 351 consensus_8580#1 ACGGC--CTTCTCTCTTCCTCCTTTTTGCTGTGAATTTTGTTGTTGAGTTTTGCTGAACC 310 *** * * * ************** ******************** *** ******** consensus_8580#0 AAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATT-GCAAGTTTCGTATT 332 consensus_8580#2 AAATGTAAATGGCTAAATGGTTGATTACCAGCTTACTCTTGAATT-GCAAGTTTCGTATT 410 consensus_8580#1 AAATGTAAATNGCTAAATNGTTGATTACCAGCTTACTGTTGAATTTGCAAGTTTCGTATT 370 ********** ******* ****************** ******* ************** consensus_8580#0 GATGAACTAAAATAACAAGGTTCAGAAATTGGATCTGCTGTAAATAGTATCGATTCATGA 392 consensus_8580#2 GATGAATAAAAAAA---------------------------------------------- 424 consensus_8580#1 GATGAACTAAAAAACAAAGGTTCAGAAATTGGANCTCCTGTAAATAATATCGATTCA--- 427 ****** **** * consensus_8580#0 GAAAGTCTCGTGTACTTTGAGTTACGCATTGTTTTTTTCCTCCTGAATCCTTCCTCTATT 452 consensus_8580#2 ------------------------------------------------------------ consensus_8580#1 ---AGTCTGGTGTACTTTGAGTTAAAAAAAAAA--------------------------- 457 consensus_8580#0 CATATTAAAGTTACAAACTCAAATTGGGAATCTCCTCCTGGTATTTCTCTGTTCAGATTA 512 consensus_8580#2 ------------------------------------------------------------ consensus_8580#1 ------------------------------------------------------------ consensus_8580#0 AAGCAGCAAACTCAAATTGGGTGCCTCCGAGCAAGGCAGGCTCGATGCACGATGGCAGCG 572 consensus_8580#2 ------------------------------------------------------------ consensus_8580#1 ------------------------------------------------------------ consensus_8580#0 GCACGGCGGCCTCGATGCGCGACGGCATCAGCAGGCTCGATGCACGACGGCGGCAACAGC 632 consensus_8580#2 ------------------------------------------------------------ consensus_8580#1 ------------------------------------------------------------ consensus_8580#0 CTCGATGCGTGACGGCAGCGTGGCGGCCTCGATGCGCGACGGTGGCGGCGGCGCGGCGGC 692 consensus_8580#2 ------------------------------------------------------------ consensus_8580#1 ------------------------------------------------------------ consensus_8580#0 CTCGATGCACGACGGCGGCAACAACCTCGATGCGAGACGGCGGCGCGATGGCCTCGATGG 752 consensus_8580#2 ------------------------------------------------------------ consensus_8580#1 ------------------------------------------------------------ consensus_8580#0 GCGACGGCGGCAGATGGAAGAGAGGAGACCTCATTTTTGTTAGCCCGATCATACCCCTGT 812 consensus_8580#2 ------------------------------------------------------------ consensus_8580#1 ------------------------------------------------------------ consensus_8580#0 TAAACCAACGGTTAGATTAGATTGGTACCTCGTGATACCTCTTTAAGGATGGGAAAAATG 872 consensus_8580#2 ------------------------------------------------------------ consensus_8580#1 ------------------------------------------------------------ consensus_8580#0 CTCTATTATAAAAGATGCTTGTTTCATCTCAAATCATAGGTTAATCATTGTGTCATGTAC 932 consensus_8580#2 ------------------------------------------------------------ consensus_8580#1 ------------------------------------------------------------ consensus_8580#0 TGCAAGCCTCCAAATTTGCAATGCAGCTCCCTTGTCTTAGAA 974 consensus_8580#2 ------------------------------------------ consensus_8580#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||