cluster # 8584

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Oryza sativa
cluster # 8584 cluster # 8584 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8584#0 length = 1070 sequences # 4

consensus_8584#1 length = 925 sequences # 1

consensusID : consensus_8584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1070
fasta sequence

                              [GCCGAAACCCTCCTCCTCTTCCTCTCTGCCTTTCTTCCGCTCCACGCCGCCCTCCGCCGCCGCCGCCATGGCTGATCCGCGGCTGTTCTCGTCGGGATCCGGCACCCGCGACG-ACCGG-ACGGACGCCTCCGGCAGGCGGCTGTACAACCCCTACCAGGACCTGAATATCCCCTACAAGCAGCTCTACGACCTCCCCACCTCCCCGGAGTTCCTCTTCCAGGAGGAGTCGCTCGCCCAGCGCCGCTCCTGGGGCGAGAACCTCACCTACTACACCGGCATAGGCTACCTCTCGGGCGCCGTCGCCGGCGCCGCCGTCGGCCTCCGCGACGCCGCGCGCAACGCCGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTCAACTCGTGCGGCAGCAAC-GGCCGCCGCATGGGGAACACGCTCGGGGTCATCGGCCTGCTCTACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCGCGACCGCGACGACTGGATCAACAGCGTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGCCGCCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGCCGCCATGGCAGGCAAGCAGGCGGCGAAGAGATATGTGCCTGCCCTCTGATTCGTCCGCACGGTATTCTCTCTGCTGTGATAAGAAATGGTCGAATCAATTGGTCGCCAAAAGGAATGTCATTTCTTCGTTTTGCTCTCCTGGTTAATTTATTATTGGAGAAGGGTTTTCTTCTCGACATTATATTTTAGCGTTATGTTACATGTAATCGATATGATCGGATCAGATCACTAAATTTTTGGCCTATGTTGCAATGTAACGTCTTCTCGAGTAGCTAGTTAGCTGGTACCAACACAATAATACATACTTTTACGTTATGCTGATGGTGAGTCCGTGACAATGTGAAATGTAATGTTCATTGTAGTGTAGTTTTCCTAGATTATTATGGTGTGTGTTTCACTTGCGATGAAACAATATGCCATAAAAGAGTAGGCTAATGTTTGCACATTTCTAATCTATCTATGGATGC]

[+] EMBL AK103851             [GCCGAAACCCTCCTCCTCTTCCTCTCTGCCTTTCTTCCGCTCCACGCCGCCCTCCGCCGCCGCCGCCATGGCTGATCCGCGGCTGTTCTCGTCGGGATCCGGCACCCGCGACG ACCGG ACGGACGCCTCCGGCAGGCGGCTGTACAACCCCTACCAGGACCTGAATATCCCCTACAAGCAGCTCTACGACCTCCCCACCTCCCCGGAGTTCCTCTTCCAGGAGGAGTCGCTCGCCCAGCGCCGCTCCTGGGGCGAGAACCTCACCTACTACACCGGCATAGGCTACCTCTCGGGCGCCGTCGCCGGCGCCGCCGTCGGCCTCCGCGACGCCGCGCGCAACGCCGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTCAACTCGTGCGGCAGCAAC GGCCGCCGCATGGGGAACACGCTCGGGGTCATCGGCCTGCTCTACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCGCGACCGCGACGACTGGATCAACAGCGTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGCCGCCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGCCGCCATGGCAGGCAAGCAGGCGGCGAAGAGATATGTGCCTGCCCTCTGATTCGTCCGCACGGTATTCTCTCTGCTGTGATAAGAAATGGTCGAATCAATTGGTCGCCAAAAGGAATGTCATTTCTTCGTTTTGCTCTCCTGGTTAATTTATTATTGGAGAAGGGTTTTCTTCTCGACATTATATTTTAGCGTTATGTTACATGTAATCGATATGATCGGATCAGATCACTAAATTTTTGGCCTATGTTGCAATGTAACGTCTTCTCGAGTAGCTAGTTAGCTGGTACCAACACAATAATACATACTTTTACGTTATGCTGATGGTGAGTCCGTGACAATGTGAAATGTAATGTTCATTGTAGTGTAGTTTTCCTAGATTATTATGGTGTGTGTTTCACTTGCGATGAAACAATATGCCATAAAAGAGTAGGCTAATGTTTGCACATTTCTAATCTATCTATGGATGC]
[+] EMBL OSR01351A            [                                                                                                            gaACGTACCGGTACGGACGCCTCCGGCAGGCGGCTGTACAACCCCTACCAGGACCTGAATATCCCCTACAAGCAGCTCTACGACCTCCCCACCTCCCCGGAGTTCCTCTTCCAGGAGGAGTCGCTCGCCCAGCGCCGCTCCTGGGGCGAGNACCTCACCTACTACACCGGCATAGGCTACCTCTCGGGCGCCGTCGCCGG GGCGCCGTCGG CTCCGCGACGCCGCGCGCAACG CGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTCAAGTTGTGCGGCAG AACGGGCCGCCGAATGGGGAACACGGTCGGGGTCATCGGCCTGCTCTACGGCGGGATCGAGAGCGGaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C28331               [                                                                                                                                                                                                                                                                             CTACACCGGCATAGGCTACCTCTCGGGCGCCGTCGCCGGCG CGCCGTCGGCCTCCGCGACGCCGCGCGCAACGCCGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTCAACTCGTGCGGCA NAAC GGCCGCCGCATGGGGAACACGCTCGGGGTCATCGGCCTGCTCTACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCGCNACCGCNACGACTGGNTCAACAGCGTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGNCGNCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGGCG CATGGCAGGCAAGCAGGCGGCGAAGAG  ATGTNCCTGCCCTCTGATTTGTCCGNACGGTATTCTCTCTGCTGTGATAAGAAATGGTCGAATCAATTTGTTGC                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU101596             [                                                                                                                                                                                                                                                                                    GGCATAGGCTACCTTTCGGGCGCCGTCGCCGGCNCCGCCGTCGGCNTCCGCGACGCCGCGCGCAACGCCGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTCAACTCGTGCGGCAGCAAC GGCCGCCGCATGGGGAACACGCTCGGGGTCATCGGCCTGCTCTACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCGCGACCGCGACGACTGGATCAACAGCGTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGCCGCCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGCCGCCATGGCAGGCAAGCAGGCGGCGAAGAGATATGTGCCTGCCCTCTGATTCGTCCGCACGGTATTCTCTCTGCTGTGATAAGAAATGGTCGAATCAATTGGTCGCCAAAAGGAATGTCATTTCTTCGTTTTGCTCTCCTGGTTAATTTATTATTGGAGAAGGGTTTTCTTCTCGACATTATATTTTAGCGTTATGTTACATGTAATCGATATGATCGGATCAGATCACTAAATTTTTGGCCTATGTTGCAATGTAACGTCTTCTCGAGTAGCTAGTTAGCTGGTACCAACACAATAATACATACTTTTACGTTAaaaaa                                                                                                                                                   ]




>consensus_8584#0
GCCGAAACCCTCCTCCTCTTCCTCTCTGCCTTTCTTCCGCTCCACGCCGCCCTCCGCCGC
CGCCGCCATGGCTGATCCGCGGCTGTTCTCGTCGGGATCCGGCACCCGCGACGACCGGAC
GGACGCCTCCGGCAGGCGGCTGTACAACCCCTACCAGGACCTGAATATCCCCTACAAGCA
GCTCTACGACCTCCCCACCTCCCCGGAGTTCCTCTTCCAGGAGGAGTCGCTCGCCCAGCG
CCGCTCCTGGGGCGAGAACCTCACCTACTACACCGGCATAGGCTACCTCTCGGGCGCCGT
CGCCGGCGCCGCCGTCGGCCTCCGCGACGCCGCGCGCAACGCCGAGCCCGGGGACACCGC
CAAGATCCGGGCGAACCGCGTCCTCAACTCGTGCGGCAGCAACGGCCGCCGCATGGGGAA
CACGCTCGGGGTCATCGGCCTGCTCTACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCG
CGACCGCGACGACTGGATCAACAGCGTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCG
CGCCGCCAACGGGCCGCGCTCCGCCGCCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGG
CGCCGCCATGGCAGGCAAGCAGGCGGCGAAGAGATATGTGCCTGCCCTCTGATTCGTCCG
CACGGTATTCTCTCTGCTGTGATAAGAAATGGTCGAATCAATTGGTCGCCAAAAGGAATG
TCATTTCTTCGTTTTGCTCTCCTGGTTAATTTATTATTGGAGAAGGGTTTTCTTCTCGAC
ATTATATTTTAGCGTTATGTTACATGTAATCGATATGATCGGATCAGATCACTAAATTTT
TGGCCTATGTTGCAATGTAACGTCTTCTCGAGTAGCTAGTTAGCTGGTACCAACACAATA
ATACATACTTTTACGTTATGCTGATGGTGAGTCCGTGACAATGTGAAATGTAATGTTCAT
TGTAGTGTAGTTTTCCTAGATTATTATGGTGTGTGTTTCACTTGCGATGAAACAATATGC
CATAAAAGAGTAGGCTAATGTTTGCACATTTCTAATCTATCTATGGATGC

consensusID : consensus_8584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 925
fasta sequence

                              [CAAACCTACCTAAAGGCAACTCTTTTTCCTTCCCCACTCCGGGCGTCTCGCCGCCGACCACAGCCCTCCCCCCCAAACCCTAGCCCTCCCGCCGCCATGGCCGACCCGCGGCTGTTCCCGTCGGGATCCAACTTCTCCGGCGACGCCTCCGGCCCCGGCCGCCGGAAGTACAACCCCTACCACGACCTCAGCACCCCCTACAGCTACCAGACCCTCTACGACCTCCCCACCTCGCCGGAGTTCCTCTTCCAGGAGGAGTCCGCGGCGCAGCGCCGCTCGTGGGGGGAGAACCTCACCTACTACACGGGCGTCGGGTACCTCTCCGGCGCCGTCGCCGGCGCCGCCCTCGGCCTCCGCGACGCCGCCGCGGGCGCGGAGCCCGGGGACACCGCCAAGATCCGCGCCAACCGCGTCCTCAACTCCTGCGGCGGCGGCGGCCGCCGGCTCGGCAACAGGCTGGGCGTCATCGGGCTGATGTACGCCGGGATGGAGAGCGCCATGGTCGCCGCGCGCGACCGCGACGACTGGGTCAACAGCGTCGCGGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCGGCGAACGGGCCGCGGTCCGCCGCCGTCGCTGGCGCCATCGGAGGGGTCCTCGCCGGCGCCGCCATGGCCGGCAAGCAGCTCGCCAAGCGATATGTGCCTGCCATATGAGGCTTCGCCGCGGTATCCCTTGTTCACTCTGATCAAAGGATCGAATCAATCAATCCGTCGAAAAAAAAAATGGTCTTCTGTTTGTTTGTCTGATCTCCAGGTTAGCTCATCGATTTGGGAATGGTTTAGCCATCTCGAGAAAAAAAATATGTGATGTTTAGTCGTATGTGGATGGTTTGAATGGAAAATTTTGACCTCTCCTTGCAATGTTGTAACATCATGTTTAATGTATAACTGCATA]

[+] EMBL AK107812             [CAAACCTACCTAAAGGCAACTCTTTTTCCTTCCCCACTCCGGGCGTCTCGCCGCCGACCACAGCCCTCCCCCCCAAACCCTAGCCCTCCCGCCGCCATGGCCGACCCGCGGCTGTTCCCGTCGGGATCCAACTTCTCCGGCGACGCCTCCGGCCCCGGCCGCCGGAAGTACAACCCCTACCACGACCTCAGCACCCCCTACAGCTACCAGACCCTCTACGACCTCCCCACCTCGCCGGAGTTCCTCTTCCAGGAGGAGTCCGCGGCGCAGCGCCGCTCGTGGGGGGAGAACCTCACCTACTACACGGGCGTCGGGTACCTCTCCGGCGCCGTCGCCGGCGCCGCCCTCGGCCTCCGCGACGCCGCCGCGGGCGCGGAGCCCGGGGACACCGCCAAGATCCGCGCCAACCGCGTCCTCAACTCCTGCGGCGGCGGCGGCCGCCGGCTCGGCAACAGGCTGGGCGTCATCGGGCTGATGTACGCCGGGATGGAGAGCGCCATGGTCGCCGCGCGCGACCGCGACGACTGGGTCAACAGCGTCGCGGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCGGCGAACGGGCCGCGGTCCGCCGCCGTCGCTGGCGCCATCGGAGGGGTCCTCGCCGGCGCCGCCATGGCCGGCAAGCAGCTCGCCAAGCGATATGTGCCTGCCATATGAGGCTTCGCCGCGGTATCCCTTGTTCACTCTGATCAAAGGATCGAATCAATCAATCCGTCGAAAAAAAAAATGGTCTTCTGTTTGTTTGTCTGATCTCCAGGTTAGCTCATCGATTTGGGAATGGTTTAGCCATCTCGAGAAAAAAAATATGTGATGTTTAGTCGTATGTGGATGGTTTGAATGGAAAATTTTGACCTCTCCTTGCAATGTTGTAACATCATGTTTAATGTATAACTGCATA]




>consensus_8584#1
CAAACCTACCTAAAGGCAACTCTTTTTCCTTCCCCACTCCGGGCGTCTCGCCGCCGACCA
CAGCCCTCCCCCCCAAACCCTAGCCCTCCCGCCGCCATGGCCGACCCGCGGCTGTTCCCG
TCGGGATCCAACTTCTCCGGCGACGCCTCCGGCCCCGGCCGCCGGAAGTACAACCCCTAC
CACGACCTCAGCACCCCCTACAGCTACCAGACCCTCTACGACCTCCCCACCTCGCCGGAG
TTCCTCTTCCAGGAGGAGTCCGCGGCGCAGCGCCGCTCGTGGGGGGAGAACCTCACCTAC
TACACGGGCGTCGGGTACCTCTCCGGCGCCGTCGCCGGCGCCGCCCTCGGCCTCCGCGAC
GCCGCCGCGGGCGCGGAGCCCGGGGACACCGCCAAGATCCGCGCCAACCGCGTCCTCAAC
TCCTGCGGCGGCGGCGGCCGCCGGCTCGGCAACAGGCTGGGCGTCATCGGGCTGATGTAC
GCCGGGATGGAGAGCGCCATGGTCGCCGCGCGCGACCGCGACGACTGGGTCAACAGCGTC
GCGGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCGGCGAACGGGCCGCGGTCCGCCGCC
GTCGCTGGCGCCATCGGAGGGGTCCTCGCCGGCGCCGCCATGGCCGGCAAGCAGCTCGCC
AAGCGATATGTGCCTGCCATATGAGGCTTCGCCGCGGTATCCCTTGTTCACTCTGATCAA
AGGATCGAATCAATCAATCCGTCGAAAAAAAAAATGGTCTTCTGTTTGTTTGTCTGATCT
CCAGGTTAGCTCATCGATTTGGGAATGGTTTAGCCATCTCGAGAAAAAAAATATGTGATG
TTTAGTCGTATGTGGATGGTTTGAATGGAAAATTTTGACCTCTCCTTGCAATGTTGTAAC
ATCATGTTTAATGTATAACTGCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8584#0      -------------GCCGAAACCCTCCTCCTCTTCCTCTCTGCCTTTCTT-CCGCTCCACG 46
consensus_8584#1      CAAACCTACCTAAAGGCAACTCTTTTTCCTTCCCCACTCCGGGCGTCTCGCCGCCGACCA 60
                                       **  * *  ****   ** *** *    ***  ****    * 

consensus_8584#0      CCGCCCTCCGCCGC---------------CGCCGCCATGGCTGATCCGCGGCTGTTCTCG 91
consensus_8584#1      CAGCCCTCCCCCCCAAACCCTAGCCCTCCCGCCGCCATGGCCGACCCGCGGCTGTTCCCG 120
                      * ******* ** *               ************ ** ************ **

consensus_8584#0      TCGGGATCCGGCACCCGCGACGACCGGACGGACGCCTCCGGCAGGCGGCTGTACAACCCC 151
consensus_8584#1      TCGGGATCCAACTTCTCCGGCGAC---GCCTCCGGCCCCGGCCGCCGGAAGTACAACCCC 177
                      *********  *  *  ** ****    *   ** * ***** * ***  **********

consensus_8584#0      TACCAGGACCTGAATATCCCCTACA---AGCAG---CTCTACGACCTCCCCACCTCCCCG 205
consensus_8584#1      TACCACGACCTCAGCACCCCCTACAGCTACCAGACCCTCTACGACCTCCCCACCTCGCCG 237
                      ***** ***** *  * ********   * ***   ******************** ***

consensus_8584#0      GAGTTCCTCTTCCAGGAGGAGTCGCTCGCCCAGCGCCGCTCCTGGGGCGAGAACCTCACC 265
consensus_8584#1      GAGTTCCTCTTCCAGGAGGAGTCCGCGGCGCAGCGCCGCTCGTGGGGGGAGAACCTCACC 297
                      ***********************    ** *********** ***** ************

consensus_8584#0      TACTACACCGGCATAGGCTACCTCTCGGGCGCCGTCGCCGGCGCCGCCGTCGGCCTCCGC 325
consensus_8584#1      TACTACACGGGCGTCGGGTACCTCTCCGGCGCCGTCGCCGGCGCCGCCCTCGGCCTCCGC 357
                      ******** *** * ** ******** ********************* ***********

consensus_8584#0      GACGCCGCGCGCAACGCCGAGCCCGGGGACACCGCCAAGATCCGGGCGAACCGCGTCCTC 385
consensus_8584#1      GACGCCGCCGCGGGCGCGGAGCCCGGGGACACCGCCAAGATCCGCGCCAACCGCGTCCTC 417
                      ********      *** ************************** ** ************

consensus_8584#0      AACTCGTGCGGCAGCAACGGCCGCCGCATGGGGAACACGCTCGGGGTCATCGGCCTGCTC 445
consensus_8584#1      AACTCCTGCGGCGGCGGCGGCCGCCGGCTCGGCAACAGGCTGGGCGTCATCGGGCTGATG 477
                      ***** ****** **  *********  * ** **** *** ** ******** *** * 

consensus_8584#0      TACGCCGGGATCGAGAGCGGCATGGTCGCCGTCCGCGACCGCGACGACTGGATCAACAGC 505
consensus_8584#1      TACGCCGGGATGGAGAGCGCCATGGTCGCCGCGCGCGACCGCGACGACTGGGTCAACAGC 537
                      *********** ******* ***********  ****************** ********

consensus_8584#0      GTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGCC 565
consensus_8584#1      GTCGCGGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCGGCGAACGGGCCGCGGTCCGCC 597
                      *** * ******************************** ** *********** ******

consensus_8584#0      GCCGTCGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGCCGCCATGGCAGGCAAGCAGGCG 625
consensus_8584#1      GCCGTCGCTGGCGCCATCGGAGGGGTCCTCGCCGGCGCCGCCATGGCCGGCAAGCAGCTC 657
                      ******** *********** ************************** *********   

consensus_8584#0      GCGAAGAGATATGTGCCTGCCCTCTGATTCGTCCGCACGGTATTCTCTCT--GCTGTGAT 683
consensus_8584#1      GCCAAGCGATATGTGCCTGCCATATGAGGCTTCGCCGCGGTATCCCTTGTTCACTCTGAT 717
                      ** *** ************** * ***  * **  * ****** *  * *   ** ****

consensus_8584#0      --AAGAAATGGTCGAATCAATTGGTCGCCAAAAGGAATG-TCATTTCTTCGTTT---TGC 737
consensus_8584#1      CAAAGGATCGAATCAATCAATCCGTCGAAAAAAAAAATGGTCTTCTGTTTGTTTGTCTGA 777
                        *** *  *    *******  ****  ****  **** ** * * ** ****   ** 

consensus_8584#0      TCTCCTGGTTAATTTATT-ATTGGAGAAGGGTTT--TCTTCTCGACATTATATTT---TA 791
consensus_8584#1      TCTCCAGGTTAGCTCATCGATTTGGGAATGGTTTAGCCATCTCGAGAAAAAAAATATGTG 837
                      ***** *****  * **  *** * *** *****   * ****** *  * *  *   * 

consensus_8584#0      GCGTTATGTTACATGTAATCGATATGATCGGATCAGATCACTAAATTTTTGGCCTATGTT 851
consensus_8584#1      ATGTTTAGTCGTATGTGGATGGTTTGAATGGA--AAATTTTGACCTCTCCTTGCAATGTT 895
                        ***  **   ****    * * ***  ***  * **    *  * *     * *****

consensus_8584#0      GCAATGTAACGTCTTCTCGAGTAGCTAGTTAGCTGGTACCAACACAATAATACATACTTT 911
consensus_8584#1      GTAACATCATGT-TTAATGTATAACTGCATA----------------------------- 925
                      * **  * * ** **   *  ** **   **                             

consensus_8584#0      TACGTTATGCTGATGGTGAGTCCGTGACAATGTGAAATGTAATGTTCATTGTAGTGTAGT 971
consensus_8584#1      ------------------------------------------------------------
                                                                                  

consensus_8584#0      TTTCCTAGATTATTATGGTGTGTGTTTCACTTGCGATGAAACAATATGCCATAAAAGAGT 1031
consensus_8584#1      ------------------------------------------------------------
                                                                                  

consensus_8584#0      AGGCTAATGTTTGCACATTTCTAATCTATCTATGGATGC 1070
consensus_8584#1      ---------------------------------------