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Oryza sativa
cluster # 8586 cluster # 8586       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8586#0 length = 682 sequences # 4  
consensus_8586#1 length = 255 sequences # 1  

consensusID : consensus_8586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 682
fasta sequence
                              [AGCAGAACCCTAGGTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGCAGCAT-CCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCA-ACCCGTTCGCGGCGGCGGCGGCGCA-TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGGACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATGTTATAATGGAGTCATTGGACTGGTATCAATCTTGGCGTGTTTTCCTGTAATATTACGNTTTCCAGCTGGGTTTTGGTATTGGTTACTTCTGGAATTGGAGAGATGAG-TTGATGACATGGCGGCA-CTGAAATTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAATTGAAGATATGATGGATGTATTGCAAT]

[+] EMBL CA754404             [AGCAGAACCCTAGGTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGCAGCAT CCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCN ACCCGTTCGCGGCGGCGGCGGCGCA TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGGACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATGTTATAATGGAGTCATTGGACTGGTATCAATCTTGGCGTGTTTTCCTGTAATATTACGNTTTCCAGCTGGGTTTTGGTATTGGTTACTTCTGGAATTGGAGAGATGAG TTGATGACATGGCGGCA CTGAAA                                                                               ]
[+] EMBL AU081345             [             GTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGAA  ATNCCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGG GGCA ACCCGTTCGCGGCGGCGGCGGCGCA TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAG ACAC                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK105329             [                                GTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGCAGCAT CCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCA ACCCGTTCGCGGCGGCGGCGGCGCA TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGGACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATTTTATAATGGAGTCATTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTACGTTTTCAAGCTGTGTTTTGGTATTGGTTACTTCTGGAATTGAAGAGATGAGTTTAATGACATGGTTGCAGCT AGTTTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAATTGAAGATATGATGGATGTATTGCAAT]
[+] EMBL AU063698             [                                      GGTGGC GCGGCACATCCATAGCTGCCGACG  ANTNC CCTGTTCGCGGCTG NGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGC GCGGCGCATCCGTAGCTGCCGAC GNGGCANACCCGTTCGCGGCGGC GCGGCGCANTCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGC NCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTNCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAG                                                                                                                                                                                                                                                                                                           ]


>consensus_8586#0 AGCAGAACCCTAGGTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAG CTGCCGACGGCAGCATCCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGG CATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCAACCCGTTCGCG GCGGCGGCGGCGCATCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTC GCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGC GGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTC GGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGG ACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATGTTATAAT GGAGTCATTGGACTGGTATCAATCTTGGCGTGTTTTCCTGTAATATTACGNTTTCCAGCT GGGTTTTGGTATTGGTTACTTCTGGAATTGGAGAGATGAGTTGATGACATGGCGGCACTG AAATTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAATTGAA GATATGATGGATGTATTGCAAT



consensusID : consensus_8586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence
                              [GATATGAAGTNCAAGCCCCCAATTTGTTCTGGNCGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGNGGCNTTTTATAATGGNGTCNTTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTNCGTTTTCAAGCTGTGTTTTGGTATTGGTTNCTTCTGGAATTGAAGNGATGNGTTTNNTGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU081346             [GATATGAAGTNCAAGCCCCCAATTTGTTCTGGNCGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGNGGCNTTTTATAATGGNGTCNTTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTNCGTTTTCAAGCTGTGTTTTGGTATTGGTTNCTTCTGGAATTGAAGNGATGNGTTTNNTGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8586#1 GATATGAAGTNCAAGCCCCCAATTTGTTCTGGNCGTTTGATAAATTTGTCATGCTCTTGT CCGTTCCTGTAGTATTGGNGGCNTTTTATAATGGNGTCNTTGGACTGTAATCAATCTTGG TGTGTTTTCCTGTAATATTNCGTTTTCAAGCTGTGTTTTGGTATTGGTTNCTTCTGGAAT TGAAGNGATGNGTTTNNTGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8586#0      AGCAGAACCCTAGGTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAG 60
consensus_8586#1      ------------------------------------------------------------
                                                                                  

consensus_8586#0      CTGCCGACGGCAGCATCCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGG 120
consensus_8586#1      ------------------------------------------------------------
                                                                                  

consensus_8586#0      CATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCAACCCGTTCGCG 180
consensus_8586#1      ------------------------------------------------------------
                                                                                  

consensus_8586#0      GCGGCGGCGGCGCATCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTC 240
consensus_8586#1      ------------------------------------------------------------
                                                                                  

consensus_8586#0      GCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGC 300
consensus_8586#1      ------------------------------------------------------------
                                                                                  

consensus_8586#0      GGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTC 360
consensus_8586#1      ------------------------------------------------------------
                                                                                  

consensus_8586#0      GGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGG 420
consensus_8586#1      ----------------------------GATATGAAGTNCAAGCCCCCAATTTGTTCTGG 32
                                                  ********** ***** * *************

consensus_8586#0      ACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATGTTATAAT 480
consensus_8586#1      NCGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGNGGCNTTTTATAAT 92
                       ********************************************* *** * *******

consensus_8586#0      GGAGTCATTGGACTGGTATCAATCTTGGCGTGTTTTCCTGTAATATTACGNTTTCCAGCT 540
consensus_8586#1      GGNGTCNTTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTNCGTTTTCAAGCT 152
                      ** *** ********  *********** ****************** ** **** ****

consensus_8586#0      GGGTTTTGGTATTGGTTACTTCTGGAATTGGAGAGATGAGTT-GATGACATGGCGGCACT 599
consensus_8586#1      GTGTTTTGGTATTGGTTNCTTCTGGAATTGAAGNGATGNGTTTNNTGNCAAAAAAAAAAA 212
                      * *************** ************ ** **** ***   ** **       *  

consensus_8586#0      GAAATTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAATTGA 659
consensus_8586#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 255
                       ***   * *       *      *    * *   **                       

consensus_8586#0      AGATATGATGGATGTATTGCAAT 682
consensus_8586#1      -----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)