These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 682 fasta sequence [AGCAGAACCCTAGGTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGCAGCAT-CCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCA-ACCCGTTCGCGGCGGCGGCGGCGCA-TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGGACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATGTTATAATGGAGTCATTGGACTGGTATCAATCTTGGCGTGTTTTCCTGTAATATTACGNTTTCCAGCTGGGTTTTGGTATTGGTTACTTCTGGAATTGGAGAGATGAG-TTGATGACATGGCGGCA-CTGAAATTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAATTGAAGATATGATGGATGTATTGCAAT] [+] EMBL CA754404 [AGCAGAACCCTAGGTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGCAGCAT CCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCN ACCCGTTCGCGGCGGCGGCGGCGCA TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGGACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATGTTATAATGGAGTCATTGGACTGGTATCAATCTTGGCGTGTTTTCCTGTAATATTACGNTTTCCAGCTGGGTTTTGGTATTGGTTACTTCTGGAATTGGAGAGATGAG TTGATGACATGGCGGCA CTGAAA ] [+] EMBL AU081345 [ GTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGAA ATNCCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGG GGCA ACCCGTTCGCGGCGGCGGCGGCGCA TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAG ACAC ] [+] EMBL AK105329 [ GTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGCAGCAT CCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCA ACCCGTTCGCGGCGGCGGCGGCGCA TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGGACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATTTTATAATGGAGTCATTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTACGTTTTCAAGCTGTGTTTTGGTATTGGTTACTTCTGGAATTGAAGAGATGAGTTTAATGACATGGTTGCAGCT AGTTTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAATTGAAGATATGATGGATGTATTGCAAT] [+] EMBL AU063698 [ GGTGGC GCGGCACATCCATAGCTGCCGACG ANTNC CCTGTTCGCGGCTG NGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGC GCGGCGCATCCGTAGCTGCCGAC GNGGCANACCCGTTCGCGGCGGC GCGGCGCANTCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGC NCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTNCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAG ] consensusID : consensus_8586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [GATATGAAGTNCAAGCCCCCAATTTGTTCTGGNCGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGNGGCNTTTTATAATGGNGTCNTTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTNCGTTTTCAAGCTGTGTTTTGGTATTGGTTNCTTCTGGAATTGAAGNGATGNGTTTNNTGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU081346 [GATATGAAGTNCAAGCCCCCAATTTGTTCTGGNCGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGNGGCNTTTTATAATGGNGTCNTTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTNCGTTTTCAAGCTGTGTTTTGGTATTGGTTNCTTCTGGAATTGAAGNGATGNGTTTNNTGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8586#0 AGCAGAACCCTAGGTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAG 60 consensus_8586#1 ------------------------------------------------------------ consensus_8586#0 CTGCCGACGGCAGCATCCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGG 120 consensus_8586#1 ------------------------------------------------------------ consensus_8586#0 CATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCAACCCGTTCGCG 180 consensus_8586#1 ------------------------------------------------------------ consensus_8586#0 GCGGCGGCGGCGCATCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTC 240 consensus_8586#1 ------------------------------------------------------------ consensus_8586#0 GCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGC 300 consensus_8586#1 ------------------------------------------------------------ consensus_8586#0 GGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTC 360 consensus_8586#1 ------------------------------------------------------------ consensus_8586#0 GGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGG 420 consensus_8586#1 ----------------------------GATATGAAGTNCAAGCCCCCAATTTGTTCTGG 32 ********** ***** * ************* consensus_8586#0 ACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATGTTATAAT 480 consensus_8586#1 NCGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGNGGCNTTTTATAAT 92 ********************************************* *** * ******* consensus_8586#0 GGAGTCATTGGACTGGTATCAATCTTGGCGTGTTTTCCTGTAATATTACGNTTTCCAGCT 540 consensus_8586#1 GGNGTCNTTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTNCGTTTTCAAGCT 152 ** *** ******** *********** ****************** ** **** **** consensus_8586#0 GGGTTTTGGTATTGGTTACTTCTGGAATTGGAGAGATGAGTT-GATGACATGGCGGCACT 599 consensus_8586#1 GTGTTTTGGTATTGGTTNCTTCTGGAATTGAAGNGATGNGTTTNNTGNCAAAAAAAAAAA 212 * *************** ************ ** **** *** ** ** * consensus_8586#0 GAAATTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAATTGA 659 consensus_8586#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 255 *** * * * * * * ** consensus_8586#0 AGATATGATGGATGTATTGCAAT 682 consensus_8586#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||