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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1400 fasta sequence
[CATGCCGGCCTCCGACCCCGCCCCCGCCGCCGCCGCTGCCGCCTACGACCGCACCGCCGAGCTCCGCGCGCTCGACGCCACCCTCTCCGGCGTCCGCGGCCTCGTCGCGTCGGGCGCCACCCACCTCCCCCGCATCTTCCACAACGTCGTCCATGGTGATCAAGAACCACCGGAGGCGACGGCGCCATCGTCCGCGGCCACGACCACGACGACCGTCCCGGTGATCGACATCAGCGGGAGCCGCGCGGCCGTGGTCGACGCCGTCCGGCGGGCGGCGGCGGAGTGGGGGTTCTTCCAGGTGACGGGGCACGGGGTTCCCCTCGCCGCGATGGACGCCGCGGCGGGCGCGGCGCGCGCGTTCCACGAGTCCGGAGGCGGCGAGGGCAGCGACAAGGCGCGGCTCTACTCGCGCGAGCCCGGGAGAGCCGTCAAGTACCACTGCAACTTCGACCTGTACCAGTCGCCGGTGGCCAACTGGCGCGACACGCTCTACCTCCGCATGGCGCCCGACCCGCCGCCCGCCGCCGACTTGCCGGAGATCTGCCGGGATGCACTGTTTGAATATGCCAAACAAGTAAAGAATTTGGGGAACACACTGTTCGAGCTGCTCTCGGAGGGCCTTGGGCTCAAACCGAGCTACCTGACAGACATAGAATGCAACCAGGGGCAAATCATACTATGCCACTACTACCCTCCCTGCCCCCAGCCTGAGCTCGCCATCGGGACAAGCCGGCATTCGGACTCCGGCTTCCTCACCATACTTCTCCAGGATGACATTGGGGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTTCATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGAGCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGAAAGTCTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAGTGAT-AGCTGAATAAAGATACTTACCCAAAAAA]
[+] EMBL AK067970 [CATGCCGGCCTCCGACCCCGCCCCCGCCGCCGCCGCTGCCGCCTACGACCGCACCGCCGAGCTCCGCGCGCTCGACGCCACCCTCTCCGGCGTCCGCGGCCTCGTCGCGTCGGGCGCCACCCACCTCCCCCGCATCTTCCACAACGTCGTCCATGGTGATCAAGAACCACCGGAGGCGACGGCGCCATCGTCCGCGGCCACGACCACGACGACCGTCCCGGTGATCGACATCAGCGGGAGCCGCGCGGCCGTGGTCGACGCCGTCCGGCGGGCGGCGGCGGAGTGGGGGTTCTTCCAGGTGACGGGGCACGGGGTTCCCCTCGCCGCGATGGACGCCGCGGCGGGCGCGGCGCGCGCGTTCCACGAGTCCGGAGGCGGCGAGGGCAGCGACAAGGCGCGGCTCTACTCGCGCGAGCCCGGGAGAGCCGTCAAGTACCACTGCAACTTCGACCTGTACCAGTCGCCGGTGGCCAACTGGCGCGACACGCTCTACCTCCGCATGGCGCCCGACCCGCCGCCCGCCGCCGACTTGCCGGAGATCTGCCGGGATGCACTGTTTGAATATGCCAAACAAGTAAAGAATTTGGGGAACACACTGTTCGAGCTGCTCTCGGAGGGCCTTGGGCTCAAACCGAGCTACCTGACAGACATAGAATGCAACCAGGGGCAAATCATACTATGCCACTACTACCCTCCCTGCCCCCAGCCTGAGCTCGCCATCGGGACAAGCCGGCATTCGGACTCCGGCTTCCTCACCATACTTCTCCAGGATGACATTGGGGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTTCATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGAGCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGAAAGTCTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAG ]
[+] EMBL CF307573 [ CTCCAGGATGACATTGGGGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTTCATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGAGCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGAAAGTCTATGATGTACCGGTGTGAATTGTATCATGCACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGAT ]
[-] EMBL CB653384 [ TTACAAGAGTGTGGAGCATAGAGTGTTGGCGAAGAACACTGACCCGAGAGTCTGGATTCCCTGTTTCTTCAGCACCCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGAGAACCCCCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGTTGGGCTAGATGGCAAGTTCAAGACTACTCTTTTTGAATTCCGGTTATAGATTGGTAAAGAAAGTTTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGATAGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGCCAACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGGGGGGGATCCCCCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATCCCATTGAATAAAGTGAT AGCTGAATAAAG ]
[-] EMBL CF307574 [ ATTACACAAGGAGCTGTGGATCCACCCTTGTTTGTAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAGAGATCTCCTGAATAAAGATACTTACCCAAAAAA]
consensusID : consensus_8593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 92 fasta sequence
[TGCTATGTATTGTTATGCCATTGAATAAAGAGATCTCCTGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF316163 [TGCTATGTATTGTTATGCCATTGAATAAAGAGATCTCCTGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8593#0 CATGCCGGCCTCCGACCCCGCCCCCGCCGCCGCCGCTGCCGCCTACGACCGCACCGCCGA 60
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 GCTCCGCGCGCTCGACGCCACCCTCTCCGGCGTCCGCGGCCTCGTCGCGTCGGGCGCCAC 120
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 CCACCTCCCCCGCATCTTCCACAACGTCGTCCATGGTGATCAAGAACCACCGGAGGCGAC 180
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 GGCGCCATCGTCCGCGGCCACGACCACGACGACCGTCCCGGTGATCGACATCAGCGGGAG 240
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 CCGCGCGGCCGTGGTCGACGCCGTCCGGCGGGCGGCGGCGGAGTGGGGGTTCTTCCAGGT 300
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 GACGGGGCACGGGGTTCCCCTCGCCGCGATGGACGCCGCGGCGGGCGCGGCGCGCGCGTT 360
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 CCACGAGTCCGGAGGCGGCGAGGGCAGCGACAAGGCGCGGCTCTACTCGCGCGAGCCCGG 420
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 GAGAGCCGTCAAGTACCACTGCAACTTCGACCTGTACCAGTCGCCGGTGGCCAACTGGCG 480
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 CGACACGCTCTACCTCCGCATGGCGCCCGACCCGCCGCCCGCCGCCGACTTGCCGGAGAT 540
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 CTGCCGGGATGCACTGTTTGAATATGCCAAACAAGTAAAGAATTTGGGGAACACACTGTT 600
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 CGAGCTGCTCTCGGAGGGCCTTGGGCTCAAACCGAGCTACCTGACAGACATAGAATGCAA 660
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 CCAGGGGCAAATCATACTATGCCACTACTACCCTCCCTGCCCCCAGCCTGAGCTCGCCAT 720
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 CGGGACAAGCCGGCATTCGGACTCCGGCTTCCTCACCATACTTCTCCAGGATGACATTGG 780
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 GGGCCTCCAGATCCTCCATGAGGACCGATGGGTCGATGTCACGCCAACTCCTGGAGCGTT 840
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 CATCGTCAATGTTGCCGATCTCCTGCAGTTGATCTCCAATGACAATTACAAGAGTGTGGA 900
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 GCATAGAGTGGTGGCGAAGAACACTGAACCGAGAGTCTCGATTGCCTGTTTCTTCAGCAC 960
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 CCATTTTCATCCGATTTCCACGAGGATGTATGGCCCGATCAAGGAGCTGTTGTCTGATGA 1020
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 GAACCCGCCTTTGTACAGGGAGGCACTCGTCAGAGATTACACCGCGCGTTACTACTCCGT 1080
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 TGGGCTAGATGGCAAGTTCAAGACTACTCTTTCTGAATTCCGGTTATAGATTGGTAAAGA 1140
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 AAGTCTATGATGTACCGGTGTGAATTGTATCATGTACTTGAAATCAGTAAAGATAGAGAT 1200
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 AGGGACAGTGTGTATGACTACTCCAGAGAGATGATGTACTTGGCATGTATGCTGTAGACA 1260
consensus_8593#1 -----TGCTATGTATTGTTATGCCATTGAATAAAGAGATCT--CCTGAATAAAAAAAAAA 53
* ***** ** *** ** * * * * ** ** * * *
consensus_8593#0 ACAGAATGGAAGTATAGTTTCAAACAATTACACAAGGAGCTGTGGATCCACCCTTGTTTG 1320
consensus_8593#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 92
* * ** ** * * *** ** * * ** *
consensus_8593#0 TAAGGAGTACTGCTATCATGCTATGTATTGTTATGCCATTGAATAAAGTGATAGCTGAAT 1380
consensus_8593#1 ------------------------------------------------------------
consensus_8593#0 AAAGATACTTACCCAAAAAA 1400
consensus_8593#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||