cluster # 8595

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Oryza sativa
cluster # 8595 cluster # 8595 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8595#0 length = 516 sequences # 1

consensus_8595#1 length = 435 sequences # 4

consensusID : consensus_8595#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CGTCACGTTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGGCCTCGCGCGCGCCGCGCCGGGCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGAACACCCGGCGGCGGGCGCCGGCGGGGAACTCTCACAAGGGGGTGTTCGGTACGCGCCGTACTCCGACGGCTACAAAAGCTTCACAGCGGTGCACGAANCGCACTACATTACCAAGTCANGGTCTCNGNGCGCGCACGCTCCCGCCGTCATCNAGGGTCGCGCGCGGAGCCGTCACCGCGTCNTCTACACGCTGCTGCTCACTGGTCGCCACTCCCCGCGACATGGTCCCTCCGCTGTACTGGATCACCGGCGCCGTGCTCGCGCCTACTCCACTACTTCGTGACGGCGGTCAAGAATCCCGCGCGGCGNCGGACGATGCCCTCCTCCGGTCCCGCTCGTNCACTCCTCTCTCCATCCAAAACTANCTNCTTCAANTCCAATCTCCTT]

[+] EMBL AA752011             [CGTCACGTTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGGCCTCGCGCGCGCCGCGCCGGGCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGAACACCCGGCGGCGGGCGCCGGCGGGGAACTCTCACAAGGGGGTGTTCGGTACGCGCCGTACTCCGACGGCTACAAAAGCTTCACAGCGGTGCACGAANCGCACTACATTACCAAGTCANGGTCTCNGNGCGCGCACGCTCCCGCCGTCATCNAGGGTCGCGCGCGGAGCCGTCACCGCGTCNTCTACACGCTGCTGCTCACTGGTCGCCACTCCCCGCGACATGGTCCCTCCGCTGTACTGGATCACCGGCGCCGTGCTCGCGCCTACTCCACTACTTCGTGACGGCGGTCAAGAATCCCGCGCGGCGNCGGACGATGCCCTCCTCCGGTCCCGCTCGTNCACTCCTCTCTCCATCCAAAACTANCTNCTTCAANTCCAATCTCCTT]




>consensus_8595#0
CGTCACGTTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGGCCTCGC
GCGCGCCGCGCCGGGCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGAT
GTTCGGCGAACACCCGGCGGCGGGCGCCGGCGGGGAACTCTCACAAGGGGGTGTTCGGTA
CGCGCCGTACTCCGACGGCTACAAAAGCTTCACAGCGGTGCACGAANCGCACTACATTAC
CAAGTCANGGTCTCNGNGCGCGCACGCTCCCGCCGTCATCNAGGGTCGCGCGCGGAGCCG
TCACCGCGTCNTCTACACGCTGCTGCTCACTGGTCGCCACTCCCCGCGACATGGTCCCTC
CGCTGTACTGGATCACCGGCGCCGTGCTCGCGCCTACTCCACTACTTCGTGACGGCGGTC
AAGAATCCCGCGCGGCGNCGGACGATGCCCTCCTCCGGTCCCGCTCGTNCACTCCTCTCT
CCATCCAAAACTANCTNCTTCAANTCCAATCTCCTT

consensusID : consensus_8595#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 435
fasta sequence

                              [CTCTCGCAATGCCGGCCATGGAGGAGGAGGC-GGTGGCCAACGAGGCGCATCACTTCCTCGTCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTCGC-GCGCGCCGCGCCG-G-GCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGACGCCGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTGCGGTACGCGCCGTACTCCGACGGCTACGACGACGGC-TTCGACAGGGCGGTGCACGACAGCGCCAGCTACATGACCCAGGTCAGGGTCGTCGGCGCGCGCACGCTTCGCCGGCGTCATCGAGGGGTTCCGCGCCGCCGGGAGGCCCGTCACCCGCGTCGTCTACACGCTGCTGCTCACCTGGGTCGCCGACGTCGCC]

[+] EMBL AU067882             [CTCTCGCAATGCCGGCCATGGAGGAGGAGGC GGTGGCCAACGAGGCGCATCACTTCCTCGTCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTCGC GCGCGCCGCGCCG G GCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGACGCCGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTGCGGTACGCGCCGTACTCCGACGGCTACGACGACGGC TTCGACAGGGCGGTGCACGACAGCGCCAGCTACATGACCCAGGTCAGGGTCGTCGGCGCGCGCACGCTTCGCCGGCGTCATC                                                                              ]
[+] EMBL C26701               [   TCGCAATGCCGGCCATGGAGGAGGAGGC GGTGGCCAACGAGGCGCATCACTTCCTCGTCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGNGCGGCGCCTCG  G GCGCCNCGCNG GNGCGCCCGCTTNACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGACG CNCGGCTGCGGGCGCCGGCGGGGAGCTCGTNGACGAGGGGGGTNTNCGGTA  CGCCGTACTTCGACGGCT                                                                                                                                                                            ]
[+] EMBL AU166366             [    CGCAATGCCGGCCATGGAGGAGGAGGCAGGNGGCCAACGAGGCGCATCACTTCCTCGTCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTCGC GCGCGCCGCGCCG G GCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGACGCCGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTGCGGTACGCGCCGTACTCCGACGGCTACGACGACGGC TTCGACAGGGCGGTGCACGACAGCGCCAGCTACATGACCCAGGTCAGGGTCGTCGGCGCGCGCACGC TCGCCGCCGTCATCGAGGGGTTCCGCGCCGCCGGGAGGCCCGTCACCCGCGTCGTCTACACGCTGCTGCTCACCTGGGTCGCCGACGTCGCC]
[+] EMBL C73104               [     GCAATGCCGGCCATGGAGGAGGAGGC GGTGGCCAACGAGGCGCATCACTTCCTCGTCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTCGCNGCGC NCGCNNCGNG GCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGATGTTCGGCGACG CGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTGCGGTAC NGCCGTACTCCGACGGCTACGACGACGGCTTTCGACAAGGCG                                                                                                                                                    ]




>consensus_8595#1
CTCTCGCAATGCCGGCCATGGAGGAGGAGGCGGTGGCCAACGAGGCGCATCACTTCCTCG
TCGTCACGTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTCG
CGCGCGCCGCGCCGGGCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAGA
TGTTCGGCGACGCCGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTGC
GGTACGCGCCGTACTCCGACGGCTACGACGACGGCTTCGACAGGGCGGTGCACGACAGCG
CCAGCTACATGACCCAGGTCAGGGTCGTCGGCGCGCGCACGCTTCGCCGGCGTCATCGAG
GGGTTCCGCGCCGCCGGGAGGCCCGTCACCCGCGTCGTCTACACGCTGCTGCTCACCTGG
GTCGCCGACGTCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8595#0      ------------------------------------------------------------
consensus_8595#1      CTCTCGCAATGCCGGCCATGGAGGAGGAGGCGGTGGCCAACGAGGCGCATCACTTCCTCG 60
                                                                                  

consensus_8595#0      -CGTCACGTTACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGG-GCCTC 58
consensus_8595#1      TCGTCACGT-ACCCCGCCCAGGGCCACATCAACCCGGCGCGCCACCTCGCGCGGCGCCTC 119
                       ******** ******************************************** *****

consensus_8595#0      GCGCGCGCCGCGCCGGGCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAG 118
consensus_8595#1      GCGCGCGCCGCGCCGGGCGCCCGCGTCACCATCTCCACCGCCGTCTCCGCCTGCCGCAAG 179
                      ************************************************************

consensus_8595#0      ATGTTCGGCGAACACCCGGCGGCGGGCGCCGGCGGGGAACTCTC--ACAAGGGGG-TGTT 175
consensus_8595#1      ATGTTCGGCGACGCCGCGGCTGCGGGCGCCGGCGGGGAGCTCGTCGACGAGGGGGGTGTG 239
                      ***********   * **** ***************** ***    ** ****** *** 

consensus_8595#0      CGGTACGCGCCGTACTCCGACGGCTACAAAA---GCTTC---ACAGCGGTGCACGA-ANC 228
consensus_8595#1      CGGTACGCGCCGTACTCCGACGGCTACGACGACGGCTTCGACAGGGCGGTGCACGACAGC 299
                      *************************** *     *****   *  *********** * *

consensus_8595#0      GC--ACTACATTACC-AAGTCANGGTC-TCNGNGCGCGCACGCTCC--CGCCGTCATCNA 282
consensus_8595#1      GCCAGCTACATGACCCAGGTCAGGGTCGTCGGCGCGCGCACGCTTCGCCGGCGTCATCGA 359
                      **   ****** *** * **** **** ** * *********** *  ** ******* *

consensus_8595#0      GGG-TCGCGCGC-----GGAG--CCGTCACC-GCGTCNTCTACACGCTGCTGCTCACT-- 331
consensus_8595#1      GGGGTTCCGCGCCGCCGGGAGGCCCGTCACCCGCGTCGTCTACACGCTGCTGCTCACCTG 419
                      *** *  *****     ****  ******** ***** *******************   

consensus_8595#0      GGTCGCCACTCCCCGCGACATGGTCCCTCCGCTGTACTGGATCACCGGCGCCGTGCTCGC 391
consensus_8595#1      GGTCGCCGACGTCGCC-------------------------------------------- 435
                      *******     *  *                                            

consensus_8595#0      GCCTACTCCACTACTTCGTGACGGCGGTCAAGAATCCCGCGCGGCGNCGGACGATGCCCT 451
consensus_8595#1      ------------------------------------------------------------
                                                                                  

consensus_8595#0      CCTCCGGTCCCGCTCGTNCACTCCTCTCTCCATCCAAAACTANCTNCTTCAANTCCAATC 511
consensus_8595#1      ------------------------------------------------------------
                                                                                  

consensus_8595#0      TCCTT 516
consensus_8595#1      -----