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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8596#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1473 fasta sequence
[TTTTTTTTTTTCGACTCATTTGGTTGATAGGGCCAACATATAACTGATGACAAATGGACAAATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATCTCTCACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACAACTCCACGGCATTTTGGGAATCCACAATAACAAGGAAGTCGCTGATCACTCGAAACAAACCTATAATCATAAGTCAACTCTTCCCATGGATTTATATCCCGCTTTGCAAAAATGATGATATGCTCATCCCCGAGAACACTTATNACGCGTGAATAACAATTCGGCTCACAAGAATGATTAATTAAATGGGCAATGCTTCCTGCCCGCGTAGCATCTATTACACGCTCATCATCTATCCTGAACATGTACGTCCCAGCACCCACTAAAGAGTTGTATATGCGCCGCTCTCTAATGTCTGATATTGGTGGCCTGACGAGCTCTCCGATGTACTCAATCATCATGTCGCCTGCCTTGTGCGAAACCTTTGCAAAGACACCAAATCCATGAATTCTTGACTTTCCAAAAGCTAGTCTCCTCCTGAATGTAGCCTTCATGCTTTTATACTTTTCAATCATAGAAGACACGTTGCCAACAGCTTCTTGATGTGCAACATCCAAAAAGCCAACTGATTGAATTGGTTCACTGATAGCATCATGGCCTACTCTATTTTGGCAGAAACCACTAACAATATAAGGCATATTCTCTACATATAAACGTTTTACAGAAGCGGTAGCCATAACTTGAGGTTGCTTTTGGCCCCTTCTCCCATGGATATTATAAGGTTCAGTCCTTGCACAACCGGATGGTGGAACTGCATCTGTCTGAACTACCACAGCAGGCTTAGCAAGGTTACTTTCAAGAGATGGACGTTCAGTCGATGGTTGTCTGTGCTTCTTGCAGTATGAAAGTAGACGAATACATGGGTCCTCATCCTCATCAAGTAACATGAGGTGGATTTTGTCATCATCTTCAAGCTCAACACAAAGATCAGCAGCACGTGCACAAAGAGGGTGATATGCAACACGACAGGTAGGATGAGAACACTGTATGCAAGCTCCATAAGCAACTCCGCAAATGCTGCATAGAAGTTTCCAGCGGTCCTTGTTGATTCTGCTCAATCCATCAATCGGTTCCATTCTCTTCACATCTTTTAAGCAAGTTTCAGGAATCCATATAGCACATGCAAGATGAGC]
[+] EMBL CA758986 [TTTTTTTTTTTCGACTCATTTGGTTGATAGGGCCAACATATAACTGATGACAAATGGACAAATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATCTCTCACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACAACTCCACGGCATTTTGGGAATCCACAATAACAAGGAAGTCGCTGATCACTCGAAACAAACCTATAATCATAAGTCAACTCTTCCCATGGATTTATATCCCGCTTTGCAAAAATGATGATATGCTCATCCCCGAGAACACTTATNACGCGTGAATAACAATTCGGCTCACAAGAATGATTAATTAAATGGGCAATGCTTCCTGCCCGCGTAGCATCTATTACACGCTCATCATCTATCCTGAACATGTACGTCCCAGCACCCACTAAAGAGTTGTATATGCGCCGCTCTCTA ]
[+] EMBL CB643793 [ cttttttttTGCCAGACCTATGTCAAAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATTTCTCACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGGTGAAATAATTCACTTCTATTGACCCTTATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACAACTCCACGGCATTTTGGGAATCCACAATAACAAGGAAGTCGCTGATCACTCGAAACAAACCTATAATCATAAGTCAACTCTTCCCATGGATTTATATCCCGCTTTGCAAAAATGATGATATGCTCATCCCCGAGAACACTTATGACGCGTGAATAACAATTCGGCTCACAAGAATGATTAATTAAATGGGCAATGCTTCCTGCCCGCGTAGCATCTATAACACGCTCATCATCTATCCTGAACATGTACGTCCCAGCACCCACTAAAGAGTTGTATATGCGCCGCTCTCTAATGTCTGATATTGGTGGCCTGACGAGCTCTCCGATGTACTCAATCATCATGTCGCCTGCCTTGTGCGAAACCTTTGCAAAGACACCAAATCCATGAATTCTTGACTTTCCAAAAGCTAGTCTCCTCCTGAATGTAGCCTTCATGCTTTTATACTTTTCAATCATAGAAGACACGTTGCCAACAGCTTCTTGATGTGCAACATCCAAAAAGCCAACTGATTGAATTGGTTCACTGATAGCATCATGGCC ]
[-] EMBL CB643792 [ ATGCGCCGCTCTCTAATGTCTGATATTGGTGGCCTGACGAGCTCTCCGATGTACTCAATCATCATGTCGCCTGCCTTGTGCGAAACCTTTGCAAAGACACCAAATCCATGAATTCTTGACTTTCCAAAAGCTAGTCTCCTCCTGAATGTAGCCTTCATGCTTTTATACTTTTCAATCATAGAAGACACGTTGCCAACAGCTTCTTGATGTGCAACATCCAAAAAGCCAACTGATTGAATTGGTTCACTGATAGCATCATGGCCTACTCTATTTTGGCAGAAACCACTAACAATATAAGGCATATTCTCTACATATAAACGTTTTACAGAAGCGGTAGCCATAACTTGAGGTTGCTTTTGGCCCCTTCTCCCATGGATATTATAAGGTTCAGTCCTTGCACAACCGGATGGTGGAACTGCATCTGTCTGAACTACCACAGCAGGCTTAGCAAGGTTACTTTCAAGAGATGGACGTTCAGTCGATGGTTGTCTGTGCTTCTTGCAGTATGAAAGTAGACGAATACATGGGTCCTCATCCTCATCAAGTAACATGAGGTGGATTTTGTCATCATCTTCAAGCTCAACACAAAGATCAGCAGCACGTGCACAAAGAGGGTGATATGCAACACGACAGGTAGGATGAGAACACTGTATGCAAGCTCCATAAGCAACTCCGCAAATGCTGCATAGAAGTTTCCAGCGGTCCTTGTTGATTCTGCTCAATCCATCAATCGGTTCCATTCTCTTCACATCTTTTAAGCAAGTTTCAGGAATCCATATAGCACATGCAAGATGAGC]
consensusID : consensus_8596#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[TATAACTGATGACAAATGGACAAATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATNTCTNACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACCTCGTGCCGAATTCGGCACGGCTCGTGCC]
[-] EMBL AA751989 [TATAACTGATGACAAATGGACAAATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATNTCTNACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACCTCGTGCCGAATTCGGCACGGCTCGTGCC]
consensusID : consensus_8596#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATTTCTCACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATT]
[-] EMBL AU162341 [TTTTTTTTTTTTTTTTTTTTTTTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATGGTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCATTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATTTCTCACATGAAAAACTGAGGCAAATTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGCAATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCTTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8596#0 TTTTTTTTTTTCGACTCATTTGGTTGATAGGGCCAACATATAACTGATGACAAATGGACA 60
consensus_8596#2 -----------------------------------------TTTTTTTTTTTTTTTTTTT 19
consensus_8596#1 --------------------------------------TATAACTGATGACAAATGGACA 22
* * *
consensus_8596#0 AATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATG 120
consensus_8596#2 TTTTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATG 79
consensus_8596#1 AATTACATGAGAAGATCTGAATATTTTGATTATGCCACCACAAAGTAAGTTCCAATTATG 82
**********************************************************
consensus_8596#0 GTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCA 180
consensus_8596#2 GTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCA 139
consensus_8596#1 GTACCAATAACAAATGGAATGCCAGACCTATGTCAGAATAGATGTACAATTACGATGGCA 142
************************************************************
consensus_8596#0 TTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATCTCTCACATGAAAAACTGAGGCAAA 240
consensus_8596#2 TTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATTTCTCACATGAAAAACTGAGGCAAA 199
consensus_8596#1 TTCTTGTGTAAATGTGAGCAAAGAATAATTAGCATNTCTNACATGAAAAACTGAGGCAAA 202
*********************************** *** ********************
consensus_8596#0 TTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGC 300
consensus_8596#2 TTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGC 259
consensus_8596#1 TTTTTGCAATTTTGCCACTAGCCCCGAAGGAGCACAGTTCGCAATCCAGTACCCTGGGGC 262
************************************************************
consensus_8596#0 AATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCT 360
consensus_8596#2 AATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCT 319
consensus_8596#1 AATTCTAAATACGATCCCTCAGTCTGATCATTGTTGAAATAATTCACTTCTATTGACCCT 322
************************************************************
consensus_8596#0 TATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACAACTCCACGGCATTTTGGGAA 420
consensus_8596#2 TATT-------------------------------------------------------- 323
consensus_8596#1 TATTTTGGCTGATTGCCCCTCTGCTTCAACATCGTTAACCTCGTGCCGAATTCGGCACGG 382
****
consensus_8596#0 TCCACAATAACAAGGAAGTCGCTGATCACTCGAAACAAACCTATAATCATAAGTCAACTC 480
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 CTCGTGCC---------------------------------------------------- 390
consensus_8596#0 TTCCCATGGATTTATATCCCGCTTTGCAAAAATGATGATATGCTCATCCCCGAGAACACT 540
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 TATNACGCGTGAATAACAATTCGGCTCACAAGAATGATTAATTAAATGGGCAATGCTTCC 600
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 TGCCCGCGTAGCATCTATTACACGCTCATCATCTATCCTGAACATGTACGTCCCAGCACC 660
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 CACTAAAGAGTTGTATATGCGCCGCTCTCTAATGTCTGATATTGGTGGCCTGACGAGCTC 720
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 TCCGATGTACTCAATCATCATGTCGCCTGCCTTGTGCGAAACCTTTGCAAAGACACCAAA 780
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 TCCATGAATTCTTGACTTTCCAAAAGCTAGTCTCCTCCTGAATGTAGCCTTCATGCTTTT 840
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 ATACTTTTCAATCATAGAAGACACGTTGCCAACAGCTTCTTGATGTGCAACATCCAAAAA 900
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 GCCAACTGATTGAATTGGTTCACTGATAGCATCATGGCCTACTCTATTTTGGCAGAAACC 960
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 ACTAACAATATAAGGCATATTCTCTACATATAAACGTTTTACAGAAGCGGTAGCCATAAC 1020
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 TTGAGGTTGCTTTTGGCCCCTTCTCCCATGGATATTATAAGGTTCAGTCCTTGCACAACC 1080
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 GGATGGTGGAACTGCATCTGTCTGAACTACCACAGCAGGCTTAGCAAGGTTACTTTCAAG 1140
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 AGATGGACGTTCAGTCGATGGTTGTCTGTGCTTCTTGCAGTATGAAAGTAGACGAATACA 1200
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 TGGGTCCTCATCCTCATCAAGTAACATGAGGTGGATTTTGTCATCATCTTCAAGCTCAAC 1260
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 ACAAAGATCAGCAGCACGTGCACAAAGAGGGTGATATGCAACACGACAGGTAGGATGAGA 1320
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 ACACTGTATGCAAGCTCCATAAGCAACTCCGCAAATGCTGCATAGAAGTTTCCAGCGGTC 1380
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 CTTGTTGATTCTGCTCAATCCATCAATCGGTTCCATTCTCTTCACATCTTTTAAGCAAGT 1440
consensus_8596#2 ------------------------------------------------------------
consensus_8596#1 ------------------------------------------------------------
consensus_8596#0 TTCAGGAATCCATATAGCACATGCAAGATGAGC 1473
consensus_8596#2 ---------------------------------
consensus_8596#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||