These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1033 fasta sequence [ATTGGTNTTCACCNTCAGGTTAGCCTTAAGATAATAATATGGTAGAGTATAAATAAAGTTTAGTTTATCCATGACCTAACTTNNGGGGTGGCTAGCTTGAGGACAACCATGTAAAAATTAGGTCCAAATNTACGACATGCTAAAGGACGACNTATTCTGCAATAAAAAATNGANTAAAATAAAACCTTAACAAGCAGAAATGTTATAGCAANTCAA-TACAAATTTTAGTAACATATT---ATAATTCATACAGGNCTGATTGCATGGAATAAATTAGTCAGCCCTACGCCTGCGTATCTTC-AATTCTCCATGTCTACTTGACAACTTCATCAAGTCATAAACATGGCTTCATATAGTGATACCATCTAAGTATATTTGCCTAATTTACATACAAACCATTTAAGTTCTCTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGCTACGAGGAACTGCATGACAAACCAAAGGTTTCTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGGTGACCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGAAGTGGAGAGACCCATCATCCGTCCAGGGCACACCCGACGACCTGATCCAAACGGTGCCAACCTCAAATCTGATCCCAACACATTGATATCCTCTTCCATAAACCTTTCGGGTCGAAACACCCATGGGTCACCCCATATCGTCTCATCATGCGATATGGCCCACATATTCACCATTGCCGTAGTCCCCGCGGGTACTAGGTGCTTGCCCACATAGGTATCATGCACCGCCAAGCGGGCCCATGAGAGAAGTGGGCCAGGCGGGTGCATGCGGAGAGTTTCCTTGATGACACAATGGAGGAAGCGAAGGCTGGGGATGTCCGAGTCGGTCATGGGCCGGTGGCACACCGCCCTATCTAGTTCTTCTTGCACCTTGGACTGGATGTCTGGGTGGAGTACCATCCGGGCCATGGCCCATTCCAGGAGTATTGCACTACATCTGTCCCACGA] [-] EMBL AA753214 [ATTGGTNTTCACCNTCAGGTTAGCCTTAAGATAATAATATGGTAGAGTATAAATAAAGTTTAGTTTATCCATGACCTAACTTNNGGGGTGGCTAGCTTGAGGACAACCATGTAAAAATTAGGTCCAAATNTACGACATGCTAAAGGACGACNTATTCTGCAATAAAAAATNGANTAAAATAAAACCTTAACAAGCAGAAATGTTATAGCAANTCAAGTACAAATTTTAGTAACATATTATAATAATTCATACAGGNCTGATTGCATGGAATAAATTAGTCAGCCCTACGCCTGCGTATCTTCTAATTCTCCATGTCTACTNGACAANTTCATAAAGTCAAAAACATGGCTTCACATAGTGATACCATCTctcca ] [+] EMBL CB618435 [ t ccttttTTTTAGTAACATATT ATAATTCATACAGGGCTGATTGCATGGAATAAATTAGTCAGCCCTACGCCTGCGTATCTTC AATTCTCCATGTCTACTTGACAACTTCATCAAGTCATAAACATGGCTTCATATAGTGATACCATCTAAGTATATTTGCCTAATTTACATACAAACCATTTAAGTTCTCTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGCTACGAGGAACTGCATGACAAACCAAAGGTTTCTTCATCTCCATAAAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGGTGACCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGAAGTGGAGAGACCCATCATCCGTCCAGGGCACACCCGACGACCTGATCCAAACGGTGCCAACCTCAAATCTGATCCCAACACATTGATATCCTCTTCCATAAACCTTTCGGGTCGAAACACCCATGGGTCACCCCATATCGTCTCATCATGCGATATGGCCCACATATTCACCATTGCCGTAGTCCCCGCGGGTACTAGGTGCTTGCCCACATAGGTATCATGCACCGCCAAGCGGGCCCATGAGAGAAGTGGGCCAGGCGGGTGCATGCGGAGAGTTTCCTTGATGACACAATGGAGGAAGCGAAGGCTGGGGATGTCCGAGTCGGTCATGGGCCGGTGGCACA ] [+] EMBL CB618477 [ CCTGCGTATCTTC AATTCTCCATGTCTACTTGACAACTTCATCAACCCATAAACATGGCTTCATATAGTGATACCATCTAAGTATATTTGCCTAATTTACATACAAACCATTTAAGTTCTCTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGCTACGAGGAACTGCATGACAAACCAAAGGTTTCTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGGTGACCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGAAGTGGAGAGACCCATCATCCGTCCAGGGCACACCCGACGACCTGATCCAAACGGTGCCAACCTCAAATCTGATCCCAACACATTGATATCCTCTTCCATAAACCTTTCGGGTCGAAACACCCATGGGTCACCCCATATCGTCTCATCATGCGATATGGCCCACATATTCACCATTGCCGTAGTCCCCGCGGGTACTAGGTGCTTGCCCACATAGGTATCATGCACCGCCAAGCGGGCCCATGAGAGAAGTGGGCCAGGCGGGTGCATGCGGAGAGTTTCCTTGATGACACAATGGAGGAAGCGAAGGCTGGGGATGTCCGAGTCGGTC ] [+] EMBL CA759862 [ tttttttTATAGTGATACCATCTAAGTATATTTGCCTAATTTACATACAAACCATTTAAGTTCTCTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGCTACGAGGAACTGCATGACAAACCAAAGGTTTCTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGGTGACCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGAAGTGGAGAGACCCATCATCCGTCCAGGGCACACCCGACGACCTGATCCAAACGGTGCCAACCTCAAATCTGATCCCAACACATTGATATCCTCTTCCATAAACCTTTCGGGTCGAAACACCCATGGGTCACCCCATATCGTCTCATCATGCGATATGGCCCACATATTCACCATTGCCGTAGTCCCCGCGGGTACTAGGTGCTTGCCCACATAGGTATCATGCACCGCCNAGCGGGCCCATGAGAGAAGTGGGCCAGGCGGGTGCATGCGGAGAGTTTCCTTGATGACACAATGGAGGAAGCGAAGGCTGGGGATGTCCGAGTCGGTCATGGGCCGGTGGCCCACCGCCCTATCTAGTTCTTCTTGCACCTTGGACTGGATGTCTGGGTGGAGTACCATCCGGGCCATGGCCCATTCCAGGAGTATTGCACTACATCTGTCCCACGA] consensusID : consensus_8598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [ACGCCTGNGTATTTTNTAATTCTCCATGTNTACTTGACAACTTNATCAAGTCAAAAACATGGCTTCACATAGTGATACCATNTAAGTATATTTGCCTAATTTACANACAAACCATTTAAGTTNTNTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGNTACGAGGAACTGCATGACAAACCAAAGGTTTNTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGCTGCCCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGCAGTGGAGAGACCCATCATCCGTCCAGGGCACACCTNTCTGCTGATGAAGAGCACGGNGAGG] [-] EMBL AA751892 [ACGCCTGNGTATTTTNTAATTCTCCATGTNTACTTGACAACTTNATCAAGTCAAAAACATGGCTTCACATAGTGATACCATNTAAGTATATTTGCCTAATTTACANACAAACCATTTAAGTTNTNTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGNTACGAGGAACTGCATGACAAACCAAAGGTTTNTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGCTGCCCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGCAGTGGAGAGACCCATCATCCGTCCAGGGCACACCTNTCTGCTGATGAAGAGCACGGNGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8598#0 ATTGGTNTTCACCNTCAGGTTAGCCTTAAGATAATAATATGGTAGAGTATAAATAAAGTT 60 consensus_8598#1 ------------------------------------------------------------ consensus_8598#0 TAGTTTATCCATGACCTAACTTNNGGGGTGGCTAGCTTGAGGACAACCATGTAAAAATTA 120 consensus_8598#1 ------------------------------------------------------------ consensus_8598#0 GGTCCAAATNTACGACATGCTAAAGGACGACNTATTCTGCAATAAAAAATNGANTAAAAT 180 consensus_8598#1 ------------------------------------------------------------ consensus_8598#0 AAAACCTTAACAAGCAGAAATGTTATAGCAANTCAATACAAATTTTAGTAACATATTATA 240 consensus_8598#1 ------------------------------------------------------------ consensus_8598#0 ATTCATACAGGNCTGATTGCATGGAATAAATTAGTCAGCCCTACGCCTGCGTATCTTC-A 299 consensus_8598#1 ------------------------------------------ACGCCTGNGTATTTTNTA 18 ******* **** ** * consensus_8598#0 ATTCTCCATGTCTACTTGACAACTTCATCAAGTCATAAACATGGCTTCATATAGTGATAC 359 consensus_8598#1 ATTCTCCATGTNTACTTGACAACTTNATCAAGTCAAAAACATGGCTTCACATAGTGATAC 78 *********** ************* ********* ************* ********** consensus_8598#0 CATCTAAGTATATTTGCCTAATTTACATACAAACCATTTAAGTTCTCTTTTAACACCACC 419 consensus_8598#1 CATNTAAGTATATTTGCCTAATTTACANACAAACCATTTAAGTTNTNTTTTAACACCACC 138 *** *********************** **************** * ************* consensus_8598#0 TATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGCTACGAGGAACTGCATGACAAACC 479 consensus_8598#1 TATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGNTACGAGGAACTGCATGACAAACC 198 ************************************ *********************** consensus_8598#0 AAAGGTTTCTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCC 539 consensus_8598#1 AAAGGTTTNTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCC 258 ******** *************************************************** consensus_8598#0 GGTGACCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGAAGTGGAGAGACCC 599 consensus_8598#1 GCTGCCCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGCAGTGGAGAGACCC 318 * ** ***************************************** ************* consensus_8598#0 ATCATCCGTCCAGGGCACACCCGACGACCTGATCCAAACGGTGCCAACCTCAAATCTGAT 659 consensus_8598#1 ATCATCCGTCCAGGGCACACCTNTCTGC-TGATGAAGAGCACGGNGAGG----------- 366 ********************* * * **** * * * * consensus_8598#0 CCCAACACATTGATATCCTCTTCCATAAACCTTTCGGGTCGAAACACCCATGGGTCACCC 719 consensus_8598#1 ------------------------------------------------------------ consensus_8598#0 CATATCGTCTCATCATGCGATATGGCCCACATATTCACCATTGCCGTAGTCCCCGCGGGT 779 consensus_8598#1 ------------------------------------------------------------ consensus_8598#0 ACTAGGTGCTTGCCCACATAGGTATCATGCACCGCCAAGCGGGCCCATGAGAGAAGTGGG 839 consensus_8598#1 ------------------------------------------------------------ consensus_8598#0 CCAGGCGGGTGCATGCGGAGAGTTTCCTTGATGACACAATGGAGGAAGCGAAGGCTGGGG 899 consensus_8598#1 ------------------------------------------------------------ consensus_8598#0 ATGTCCGAGTCGGTCATGGGCCGGTGGCACACCGCCCTATCTAGTTCTTCTTGCACCTTG 959 consensus_8598#1 ------------------------------------------------------------ consensus_8598#0 GACTGGATGTCTGGGTGGAGTACCATCCGGGCCATGGCCCATTCCAGGAGTATTGCACTA 1019 consensus_8598#1 ------------------------------------------------------------ consensus_8598#0 CATCTGTCCCACGA 1033 consensus_8598#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||