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Oryza sativa
cluster # 8602 cluster # 8602       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8602#0 length = 1094 sequences # 5  

consensusID : consensus_8602#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1094
fasta sequence
                              [TCACTGCCACTCTGCACTCTTCTCTCATCCAAAACCCCAATTTCCCACCCAAATCTATCTCTTCTCTCATCTTCTTCTCTCCTGCGGATTTGCAAATTACACACTTCTGCAAGCTAAAAAATCCAGTTTTCTTGCTCAGGCTAGTGCCTGGTTGTATCTACAGCTCAGCTCAGAAAGAAAGGAGTGGTTTTTGAGGAGTGGTTTTTGTCTACACAGCTGCTGCATATCATGCCTCCACTTGCCACAATGTCATCGCCAGGTTCGCTTCTTCTGTTGACCCCCGCTGTGTACCAGGGGATTGGGAGAAATCGTGGAGGACAAAGCCAGGAAGGACAATCTATCTCGTCTTCACGATCTCTCAAGACTAAACTCAGCGTTTCTGCCAGAGCAGTTTCTTCATGCGAAGCAT-CCATGAGAATAACATGTTGCGCAAACCAGACACAGACTGCACGAC-GCAAATC-TTTCTCT-GGACCTACCTCACCGCCATCAGGGTCAGTTAAAGAGAAAGTGAGGAGTCCAAAGCTTGACGATGGAGGCACCGGCTTCCCGCCATTCCGGTTCGGTGGAGGAGGAGGAGGTGGAGGTGGAGGCGGCAGCAACTCTGCCGGTGGATTCATCCTGTTCGTGATCGTTTTGCTTCTTGATTACCTGAGGGAGTTTGAGAGGAACCTGCAGAATGGAACAAGGAGGGGCAGTGACTATGACAATGGGCTCGCTCCCCAATAGTTGGTTTGTTTCATAGGACACTTTAGCGACGATCC---GAAATGC---AAG-TGGGC-TGA-CCCG-TAAA-CCCACTTATAAATCATTTAAGCGGGTCG-ATCCGTGGCTGGCCACTGGCCCATTTGCATCCTTATCTGAAACTCCTTTTCTGGAAATGTGTCAAGTGAAAATTGTGCCTGAGAAATGGTAATGGAGTGTAGCAGCCTTCTGGAAAGAAATGGTAATGGCATGTAGAAAGCTGAGACTGGTGTATCAAAGGCCAATGACAATAGCTACATGATATTTGAAGGGCCTTGATGAGGCAAATGAGTGACAATGGACCAGGTGTTTAAAAATGTGAATTTTTTGTTGAGATTGTTGATTGGATATGTTGCGAG]

[+] EMBL AK061136             [TCACTGCCACTCTGCACTCTTCTCTCATCCAAAACCCCAATTTCCCACCCAAATCTATCTCTTCTCTCATCTTCTTCTCTCCTGCGGATTTGCAAATTACACACTTCTGCAAGCTAAAAAATCCAGTTTTCTTGCTCAGGCTAGTGCCTGGTTGTATCTACAGCTCAGCTCAGAAAGAAAGGAGTGGTTTTTGAGGAGTGGTTTTTGTCTACACAGCTGCTGCATATCATGCCTCCACTTGCCACAATGTCATCGCCAGGTTCGCTTCTTCTGTTGACCCCCGCTGTGTACCAGGGGATTGGGAGAAATCGTGGAGGACAAAGCCAGGAAGGACAATCTATCTCGTCTTCACGATCTCTCAAGACTAAACTCAGCGTTTCTGCCAGAGCAGTTTCTTCATGCGAAGCAT CCATGAGAATAACATGTTGCGCAAACCAGACACAGACTGCACGAC GCAAATC TTTCTCT GGACCTACCTCACCGCCATCAGGGTCAGTTAAAGAGAAAGTGAGGAGTCCAAAGCTTGACGATGGAGGCACCGGCTTCCCGCCATTCCGGTTCGGTGGAGGAGGAGGAGGTGGAGGTGGAGGCGGCAGCAACTCTGCCGGTGGATTCATCCTGTTCGTGATCGTTTTGCTTCTTGATTACCTGAGGGAGTTTGAGAGGAACCTGCAGAATGGAACAAGGAGGGGCAGTGACTATGACAATGGGCTCGCTCCCCAATAGTTGGTTTGTTTCATAGGACACTTTAGCGACGATCC   GAAATGC   AAG TGGGC TGA CCCG TAAA CCCACTTATAAATCATTTAAGCGGGTCG ATCCGTGGCTGGCCACTGGCCCATTTGCATCCTTATCTGAAACTCCTTTTCTGGAAATGTGTCAAGTGAAAATTGTGCCTGAGAAATGGTAATGGAGTGTAGCAGCCTTCTGGAAAGAAATGGTAATGGCATGTAGAAAGCTGAGACTGGTGTATCAAAGGCCAATGACAATAGCTACATGATATTTGAAGGGCCTTGATGAGGCAAATGAGTGACAATGGACCAGGTGTTTAAAAATGTGAATTTTTTGTTGAGATTGTTGATTGGATATGTTGCGAG]
[+] EMBL CF305236             [         CTCTGCACTCTTCTCTCATCCAAAACCCCAATTTCCCACCCAAATCTATCTCTTCTCTCATCTTCTTCTCTCCTGCGGATTTGCAAATTACACACTTCTGCAAGCTAAAAAATCCAGTTTTCTTGCTCAGGCTAGTGCCTGGTTGTATCTACAGCTCAGCTCAGAAAGAAAGGAGTGGTTTTTGAGGAGTGGTTTTTGTCTACACAGCTGCTGCATATCATGCCTCCACTTGCCACAATGTCATCGCCAGGTTCGCTTCTTCTGTTGACCCCCGCTGTGTACCAGGGGATTGGGAGAAATCGTGGAGGACAAAGCCAGGAAGGACAATCTATCTCGTCTTCACGATCTCTCAAGACTAAACTCAGCGTTTCTGCCAGAGCAGTTTCTTCATGCGAAGCAT CCATGAGAATAACATGTTGCGCAAACCAGACACAGACTGCACGAC GCAAATC TTTCTCT GGACCTACCTCACCGCCATCAGGGTCAGTTAAAGAGAAAGTGAGGAGTCCAAAGCTTGACGATGGAGGCACCGGCTTCCCG CATTCCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSS13049A            [                                                                                  TGCGGATTTGCAAATTACACACTTCTGCAAGCTAAAAAATCCAGTTTTCTTGCTCAGGCTAGTGCCTGGTTGTATCTACAGCTCAGCTCAGAAAGAAAGGAGTGGTTTTTGAGGAGTGGTTTTTGTCTACACAGCTGCTGCATATCATGCCTCCACTTGCCACAATGTCATCGCCAGGTTCGCTTCTTCTGTTGACCCCCGCTGTGTACCAGGGGATTGGGAGAAATCGTGGAGGACAAAGCCAGGAAGGACAATCTATCTCGTCTTCACGATCTCTCAAGACTAAACTCAGCGTTTCTGCCAGAGCAGTTTCTTCATGCG AG ATCCCATGAGAATAACATGTTGCGCAAACCAGACACAGACTGCACGAC GNAAATC TTTCTCTGGGACCTACCTCACCGCCATCAGGGTCAGTTAAGGAGAAAGTGAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU162954             [                                                                                  TGCGGATTTGCAAATTACACACTTCTGCAAGCTAAAAAATCCAGTTTTCTTGCTCAGGCTAGTGCCTGGTTGTATCTACAGCTCAGCTCAGAAAGAAAGGAGTGGTTTTTGAGGAGTGGTTTTTGTCTACACAGCTGCTGCATATCATGCCTCCACTTGCCACAATGTCATCGCCAGGTTCGCTTCTTCTGTTGACCCCCGCTGTGTACCAGGGGATTGGGAGAAATCGTGGAGGACAAAGCCAGGAAGGACAATCTATCTCGTCTTCACGATCTCTCAAGACTAAACTCAGCGTTTCTGCCAGAGCAGTTTCTTCATGCGAA NATCCCATGAGAATAACATGTTGCGCAAACCAGACACAGACTGCACGACGGCAAATCTTTTCTCT GGgac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU088700             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GATCCCCGGAATTGCNCAAAGTTGGGCTTGACCCCGTTAAACCCCACTTATAAATCATTTAAGCGGGTCGAATCCGTGGCT GCCACTGGCCCATTTGCATCCTTATCTGAAACTCCTTTTCTGGAAATGTGTCAAGTGAGAATTGTGCCTGAGAAATGGTAATGGAGTGTAGCAGCCTTCTGGAAAGAAATGGTAATGGCATGTAGAAAGCTGAGACTGGTGTATCAAAGGCCAATGACAATAGCTACATGATATTTGAAGGGCCTTGATGAGGCAAATGAGTGACAATGGACCAGGTGTTTAAAAATGTGAATTTTTTGTTGAaaaa                     ]


>consensus_8602#0 TCACTGCCACTCTGCACTCTTCTCTCATCCAAAACCCCAATTTCCCACCCAAATCTATCT CTTCTCTCATCTTCTTCTCTCCTGCGGATTTGCAAATTACACACTTCTGCAAGCTAAAAA ATCCAGTTTTCTTGCTCAGGCTAGTGCCTGGTTGTATCTACAGCTCAGCTCAGAAAGAAA GGAGTGGTTTTTGAGGAGTGGTTTTTGTCTACACAGCTGCTGCATATCATGCCTCCACTT GCCACAATGTCATCGCCAGGTTCGCTTCTTCTGTTGACCCCCGCTGTGTACCAGGGGATT GGGAGAAATCGTGGAGGACAAAGCCAGGAAGGACAATCTATCTCGTCTTCACGATCTCTC AAGACTAAACTCAGCGTTTCTGCCAGAGCAGTTTCTTCATGCGAAGCATCCATGAGAATA ACATGTTGCGCAAACCAGACACAGACTGCACGACGCAAATCTTTCTCTGGACCTACCTCA CCGCCATCAGGGTCAGTTAAAGAGAAAGTGAGGAGTCCAAAGCTTGACGATGGAGGCACC GGCTTCCCGCCATTCCGGTTCGGTGGAGGAGGAGGAGGTGGAGGTGGAGGCGGCAGCAAC TCTGCCGGTGGATTCATCCTGTTCGTGATCGTTTTGCTTCTTGATTACCTGAGGGAGTTT GAGAGGAACCTGCAGAATGGAACAAGGAGGGGCAGTGACTATGACAATGGGCTCGCTCCC CAATAGTTGGTTTGTTTCATAGGACACTTTAGCGACGATCCGAAATGCAAGTGGGCTGAC CCGTAAACCCACTTATAAATCATTTAAGCGGGTCGATCCGTGGCTGGCCACTGGCCCATT TGCATCCTTATCTGAAACTCCTTTTCTGGAAATGTGTCAAGTGAAAATTGTGCCTGAGAA ATGGTAATGGAGTGTAGCAGCCTTCTGGAAAGAAATGGTAATGGCATGTAGAAAGCTGAG ACTGGTGTATCAAAGGCCAATGACAATAGCTACATGATATTTGAAGGGCCTTGATGAGGC AAATGAGTGACAATGGACCAGGTGTTTAAAAATGTGAATTTTTTGTTGAGATTGTTGATT GGATATGTTGCGAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)