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Oryza sativa
cluster # 8603 cluster # 8603       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8603#0 length = 1256 sequences # 5  

consensusID : consensus_8603#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1256
fasta sequence
                              [CCCAATTGTGCTATCACACTAGAAGAGACATTTCCTCTTCTATGGAATCACGCTGCACAGCATAACACTT-TTTTTTTCTTTCTAATCCAATCAAATCTTTTNGTTGCCTATAAAAACATGTCTATCATCTACAATTGCGTCACAAGTATGACCAAGACTGTACAAAGCAGCCTAGCTGATCCAGCAAGCAAGCGCCGCGGCGACGAGCTGGACGTGCCCTGCTCGGAGAGCGAGCTGAGGCTGAACTGTGGGTTGGAGCCGTACAACGCCTGCACGCCCTCGACGTCGTCCACGGTGAGGCGCACCTTCTTCTCCCGCGGCTTGATGCTCGGGTACATGACGGCGCGCGGCGACGCCGAGTGGCCGAGCCCCAGGACAT-GGCCGATCTCGTGCGTCGCCACGGACTCCAGGTCGATGGCCGACGCCGTCGCGTCGACGTCGAAGTCCACCGCCCAGTGCTCCGACGCGTCGAGGTGGAGCCGCCCGTTCTTTGGGGAGAAGGCGTGGCCGAGGATGCCGAGCGGCCCGTCGAACGGCACGCCGTCGCCGTGGTTGCCGGCGTAGAAGCCCACCTTGATGTCGGCCGCCTCGTAGTCGTCCGTCTCGACGAAGCCCACGGGGATCGTCCGCGCCCACCGCGCGAACGCGCGCTGGAACACGGCACGCACGGCGGCCGGCGGCAGGTAGCCGACGGTGGCCGTCGGCGAGACGGCGTAGGACAGCACGATCGGCGGGTCCGACCGCGTCCATCGCGGCTCGCCCTTGAAGAACGTGAACCGGCTGACCACGCCGCCCTGCGCCCCCGGCGAGAGCGCGACGGACACGGGGCGCTCCACATCGTCATCCCCGACGCCGCAGCGCGGCGACATGATCTGATCGAGCGTGGCGTTGTCGAGCCGGCCGGTGACCGGCAGGCTGAACCTCGTCTGGTACCTCCTCACGGCGACCTCGAGGTGCTCGTCGAAGGCGTCCGTCGTGTCACGCCCCGGCTTCGCCATGTACCCGAACCTCGCCAGGTACCGCTTCAGCTCCGCGAGCCCCGTGACATGGCTCCCTCGCCCCGCGTCGAGCAGCTGCTTGAACGAGTGCCACGCCACGCCGCCGTGCCCGTGCACCACGGGGAGCCCGAGCACCACCACCATCGCCACGGCGGCGACCAGGCACGACGCGGCAGCCGCGCGGCGACATAGGAACATGAGAGCGCGCGCGGCGTGGCGTGGCGAGGGCGAGGCGGCCGGTGTGGCCGTTATTCTCGT]

[-] EMBL BM420032             [CCCAATTGTGCTATCACACTAGAAGAGACATTTCCTCTTCTATGGAATCACGCTGCACAGCATAACACTT TTTTTTTCTTTCTAATCCAATCAAATCTTTTNGTTGCCTATAAAAACATGTCTATCATCTACAATTGCGTCACAAGTATGACCAAGACTGTACAAAGCAGCCTAGCTGATCCAGCAAGCAAGCGCCGCGGCGACGAGCTGGACGTGCCCTGCTCGGAGAGCGAGCTGAGGCTGAACTGTGGGTTGGAGCCGTACAACGCCTGCACGCCCTCGACGTCGTCCACGGTGAGGCGCACCTTCTTCTCCCGCGGCTTGATGCTCGGGTACATGACGGCGCGCGGCGACGCCGAGTGGCCGAGCCCCAGGACATGGGCCGATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL BM421968             [CCCAATTGTGCTATCACACTAGAAGAGACATTTCCTCTTCTATGGAATCACGCTGCACAGCATAACACTTGNTTTTTGCTTTCTAATCCAATCAAATCTTTTGGTTGCCTATAAAAACATGTCTATCATCTACAATTGCGTCACAAGTATGACCAAGACTGTACAAAGCAGCCTAGCTGATCCAGCAAGCAAGCGCCGCGGCGACGAGCTGGACGTGCCCTGCTCGGAGAGCGAGCTGAGGCTGAACTGTGGGTTGGAGCCGTACAACGCCTGCACGCCCTCGACGTCGTCCACGGTGAGGCGCACCTTCTTCTCCCGCGG TTGATGCTCGGGTACATGACGG GCGCGG GACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB651077             [                                                                                                TCTTTTTGTTGCCTATAAAAACCTTTAAATCATCTACAATTGCGTCACAAGTATGACCAAGACTGTACAAAGCAGCCTAGCTGATCCAGCAAGCCAGCGCCGCGGCGACGAGCTGGACGTGCCCTGCTCGGAGAGCGAGCTGAGGCTGAACTGTGGGTTGGAGCCGTACAACGCCTGCACGCCCTCGACGTCGTCCACGGTGAGGCGCACCTTCTTCTCCCGCGGCTTGATGCTCGGGTACATGACGGCGCGCGGCGACGCCGAGTGGCCGAGCCCCAGGACAT GGCCGATCTCGTGCGTCGCCACGGACTCCAGGTCGATGGCCGACGCCGTCGCGTCGACGTCGAAGTCCACCGCCCAGTGCTCCGACGCGTCGAGGTGGAGCCGCCCGTTCTTTGGGGAGAAGGCGTGGCCGAGGATGCCGAGCGGCCCGTCGAACGGCACGCCGTCGCCGTGGTTGCCGGCGTAGAAGCCCACCTTGATGTCGGCCGCCTCGTAGTCGTCCGTCTCGACGAAGCCCACGGGGATCGTCCGCGCCCACCGCGCGAACGCGCGCTGGAACACGGCACGCACGGCGGCCGGCGGCAGGTAGCCGACGGTGGCCGTCGGCGAGACGGCGTAGGACAGCACGATCGGCGGGTCCGACCGCGTCCATCGCGGCTCGCCCTTGAAGAACGTGAACCGGCTGACCACGCCGCCCTGCGCCCCCGGCGAGAGCGCGACGGACACGGGGCGCTCCACATCGTCATCCCCGACGCCGCAGCGCGGCGAC                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA755941             [                                                                                                                                                                                       AGCAAGCAAGCGCCGCGGCGACGAGCTGGACGTGCCCTGCTCGGAGAGCGAGCTGAGGCTGAACTGTGGGTTGGAGCCGTACAACGCCTGCACGCCCTCGACGTCGTCCACGGTGAGGCGCACCTTCTTCTCCCGCGGCTTGATGCTCGGGTACATGACGGCGCGCGGCGACGCCGAGTGGCCGAGCCCCAGGACAT GGCCGATCTCGTGCGTCGCCACGGACTCCAGGTCGATGGCCGACGCCGTCGCGTCGACGTCGAAGTCCACCGCCCAGTGCTCCGACGCGTCGAGGTGGAGCCGCCCGTTCTTTGGGGAGAAGGCGTGGCCGAGGATGCCGAGCGGCCCGTCGAACGGCACGCCGTCGCCGTGGTTGCCGGCGTAGAAGCCCACCTTGATGTCGGNCGCCTCGTAGTCGTCCGTCTCGACGAAGCCCACGGGGATCGTCCGCGCCCACCGCGCGAACGCGCGCTGGAACACGGCACGCACGGCGGCCGGCGGCAGGTAGCCGACGGTGGCCGTCGGCGAGACGGCGTAGGACAGCACGATCGGCGGGTCCGACCGCGTCCATCGCGGCTCGCCCTTGAAAAACGTGAACCGGCTGACCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB651076             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGGCCGAGGATGCCGAGCGGCCCGTCGAACGGCACGCCGTCGCCGTGGTTGCCGGCGTAGAAGCCCACCTTGATGTCGGCCGCCTCGTAGTCGTCCGTCTCGACGAAGCCCACGGGGATCGTCCGCGCCCACCGCGCGAACGCGCGCTGGAACACGGCACGCACGGCGGCCGGCGGCAGGTAGCCGACGGTGGCCGTCGGCGAGACGGCGTAGGACAGCACGATCGGCGGGTCCGACCGCGTCCATCGCGGCTCGCCCTTGAAGAACGTGAACCGGCTGACCACGCCGCCCTGCGCCCCCGGCGAGAGCGCGACGGACACGGGGCGCTCCACATCGTCATCCCCGACGCCGCAGCGCGGCGACATGATCTGATCGAGCGTGGCGTTGTCGAGCCGGCCGGTGACCGGCAGGCTGAACCTCGTCTGGTACCTCCTCACGGCGACCTCGAGGTGCTCGTCGAAGGCGTCCGTCGTGTCACGCCCCGGCTTCGCCATGTACCCGAACCTCGCCAGGTACCGCTTCAGCTCCGCGAGCCCCGTGACATGGCTCCCTCGCCCCGCGTCGAGCAGCTGCTTGAACGAGTGCCACGCCACGCCGCCGTGCCCGTGCACCACGGGGAGCCCGAGCACCACCACCATCGCCACGGCGGCGACCAGGCACGACGCGGCAGCCGCGCGGCGACATAGGAACATGAGAGCGCGCGCGGCGTGGCGTGGCGAGGGCGAGGCGGCCGGTGTGGCCGTTATTCTCGT]


>consensus_8603#0 CCCAATTGTGCTATCACACTAGAAGAGACATTTCCTCTTCTATGGAATCACGCTGCACAG CATAACACTTTTTTTTTCTTTCTAATCCAATCAAATCTTTTNGTTGCCTATAAAAACATG TCTATCATCTACAATTGCGTCACAAGTATGACCAAGACTGTACAAAGCAGCCTAGCTGAT CCAGCAAGCAAGCGCCGCGGCGACGAGCTGGACGTGCCCTGCTCGGAGAGCGAGCTGAGG CTGAACTGTGGGTTGGAGCCGTACAACGCCTGCACGCCCTCGACGTCGTCCACGGTGAGG CGCACCTTCTTCTCCCGCGGCTTGATGCTCGGGTACATGACGGCGCGCGGCGACGCCGAG TGGCCGAGCCCCAGGACATGGCCGATCTCGTGCGTCGCCACGGACTCCAGGTCGATGGCC GACGCCGTCGCGTCGACGTCGAAGTCCACCGCCCAGTGCTCCGACGCGTCGAGGTGGAGC CGCCCGTTCTTTGGGGAGAAGGCGTGGCCGAGGATGCCGAGCGGCCCGTCGAACGGCACG CCGTCGCCGTGGTTGCCGGCGTAGAAGCCCACCTTGATGTCGGCCGCCTCGTAGTCGTCC GTCTCGACGAAGCCCACGGGGATCGTCCGCGCCCACCGCGCGAACGCGCGCTGGAACACG GCACGCACGGCGGCCGGCGGCAGGTAGCCGACGGTGGCCGTCGGCGAGACGGCGTAGGAC AGCACGATCGGCGGGTCCGACCGCGTCCATCGCGGCTCGCCCTTGAAGAACGTGAACCGG CTGACCACGCCGCCCTGCGCCCCCGGCGAGAGCGCGACGGACACGGGGCGCTCCACATCG TCATCCCCGACGCCGCAGCGCGGCGACATGATCTGATCGAGCGTGGCGTTGTCGAGCCGG CCGGTGACCGGCAGGCTGAACCTCGTCTGGTACCTCCTCACGGCGACCTCGAGGTGCTCG TCGAAGGCGTCCGTCGTGTCACGCCCCGGCTTCGCCATGTACCCGAACCTCGCCAGGTAC CGCTTCAGCTCCGCGAGCCCCGTGACATGGCTCCCTCGCCCCGCGTCGAGCAGCTGCTTG AACGAGTGCCACGCCACGCCGCCGTGCCCGTGCACCACGGGGAGCCCGAGCACCACCACC ATCGCCACGGCGGCGACCAGGCACGACGCGGCAGCCGCGCGGCGACATAGGAACATGAGA GCGCGCGCGGCGTGGCGTGGCGAGGGCGAGGCGGCCGGTGTGGCCGTTATTCTCGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)