These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 923 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTAAAACGAGGAAAATAGAACCCATTTCATTAACTGCACCCCATGCACATAGTTCGATAGAACATTTGAACGCCATTCCATTCGNGAATCCAGGTTCAATGTTGGGAAGAAACCGCCACCTGANCAAGCTAAAATATTTCAAAGTTATGAACCAATGCCAACTTCTCGAGCTAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTGGAC-AAAGTTGAACCCTA-GCTAATCTACGGAACGTCGCT-GAAAATTCG-CCTAAAAACAAAAAAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCA-GTGTATTTACTCCAATACTTGTTGAAACACAGATTTTATCATCATGA-GTTTCTTCCCAAACTGTCCCCCAGTACAAATCGAGGGCAAAACACCCGTTGCAGTCA-GTTGCGAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATA-TGTTAAGTTCCAAGCCAAGTGCTCACTTTCCAGCACATCGCTCAAAATCACAAA-TGATCTCTCAA-TGTCATCAAAACTAACCTTCAGGCCGAGGCCTTTTATAGTCTCTTTCACCTCGCTCATGAGCAGTATCATGACTGTCATGGTGCTTTGAGCCATGGGAATTGCGCTGTTCTTTAATGTCGTCCATTGGGGCATCTTGAGCAGTCTCTGGTGTATTCTGCTTGCCAAGGTGCCCATTGCCTGTAACTTGATCAGCATTTCTATGATCCCCCCGATGCATAACATGAGGGGGACTCTGCTTCCTCTCCTGCTTTATCTTATTATCCTC] [-] EMBL C96853 [TTTTTTTTTTTTTTTTTTTTTTTAAAACGAGGAAAATAGAACCCATTTCATTAACTGCACCCCATGCACATAGTTCGATAGAACATTTGAACGCCATTCCATTCGNGAATCCAGGTTCAATGTTGGGAAGAAACCGCCACCTGANCAAGCTAAAATATTTCAAAGTTATGANCCAATGCCAACTTCTCGAGCTAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTNGTGGNCAAAAGTTGAACCCTANGCTAATCTACGG ACGTCGCTGGAAAATTCGNCCTAA ] [+] EMBL CB674094 [ AACATTTGAACGCCATTCCATTCGAGAATCCAGGTTCAATGTTGGGAAGAAACCGCCACCTGAACAAGCTAAAATATTTCAAAGTTATGAACCAATGCCAACTTCTCGAGCTAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTGGAC AAAGTTGAACCCTA GCTAATCTACGGAACGTCGCT GAAAATTCG CCTAAAAACAAAAAAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCA GTGTATTTACTCCAATACTTGTTGAAACACAGATTTTATCATCATGA GTTTCTTCCCAAACTGTCCCCCAGTACAAATCGAGGGCAAAACACCCGTTGCAGTCA GTTGCGAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATA TGTTAAGTTCCAAGCCAAGTGCTCACTTTCCAGCACATCGCTCAAAATCACAAA TGATCTCTCAA TGTCATCAAAACTAACCTTCAGGCCGAGGCCTTTTATAGTCTCTTTCACCTCGCTCATGAGCAGTATCATGACTGTCATGGTGCTTTGAGCCATGGGAATTGCGCTGTTCTTTAATGTCGTCCATTGGGGCATCTTGAGCAGTCTCTGGTGTATTCTGCTTGCCAAGGTGCCCATTGCCTGTAACTTGATCAGCATTTCTATGATCCCCCCGATGCATAACATGAGGGGGACTCTGCTTCCTCTCCTGCTTTATCTTATTATCCTC] [+] EMBL CB637572 [ TTATGAACCAATGCCAACTTCTCGAGCTAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTGGAC AAAGTTGAACCCTA GCTAATCTACGGAACGTCGCT GAAAATTCG CCTAAAAACAAAAAAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCA GTGTATTTACTCCAATACTTGTTGAAACACAGATTTTATCATCATGA GTTTCTTCCCAAACTGTCCCCCAGTACAAATCGAGGGCAAAACACCCGTTGCAGTCA GTTGCGAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATA TGTTAAGTTCCAAGCCAAGTGCTCACTTTCCAGCACATCGCTCAAAATC ] [-] EMBL BI802592 [ tttttCTGCAAAAGCATATTCAATTCATCTAGTGGAC AAAGTTGAACCCTA GCTAATCTACGGAACGTCGCT GAAAATTCG CCTAAAAACAAAA AAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCAGGTGTATTTACTCCAATAC TGTTGAAACACAGATTTTATCATCATGAGGTTTCTTCCCAAACTGTCCCCCAGTACAAATCCAGGGCAAAACACCCGTTGCAGTCAGGTTGCAAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCTCACTTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATAGTGTTAAGTTCCAAGCCAAGTGCTCACTTTCCAGCACATCGCTCAAAATCACAAAGTGATCTCTCAAGTGTCATCAAAACTAACCTTCAGGCCGAGGCCTTTTATAGTCTCTTTCACCTCGCTCATGAGCAGTATC ] consensusID : consensus_8608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [TTTTTTTTTTAAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTGGACAAAGTTGAACCCTAGCTAATCTACGGAACGTCGCTGAAAATTCGCCTAAAAACAAAAAAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCAGTGTATTTACTCCAATACTTGTTGAAACACAGATTTTATCATCATGAGTTTCTTCCCAAACTGTCCCCCAGTACAAATCCAGGGCAAAACACCCGTTGCAGTCAGTTGCGAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATATGTTCAGTTCCAAGCCAAGTGCTCACTTTCCAGAATCGCTCAAAATCACAAATGATCTCTCAAAGGCATCAAAATAAC] [-] EMBL BI812769 [TTTTTTTTTTAAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTGGACAAAGTTGAACCCTAGCTAATCTACGGAACGTCGCTGAAAATTCGCCTAAAAACAAAAAAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCAGTGTATTTACTCCAATACTTGTTGAAACACAGATTTTATCATCATGAGTTTCTTCCCAAACTGTCCCCCAGTACAAATCCAGGGCAAAACACCCGTTGCAGTCAGTTGCGAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATATGTTCAGTTCCAAGCCAAGTGCTCACTTTCCAGAATCGCTCAAAATCACAAATGATCTCTCAAAGGCATCAAAATAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8608#0 TTTTTTTTTTTTTTTTTTTTTTTAAAACGAGGAAAATAGAACCCATTTCATTAACTGCAC 60 consensus_8608#1 ------------------------------------------------------------ consensus_8608#0 CCCATGCACATAGTTCGATAGAACATTTGAACGCCATTCCATTCGNGAATCCAGGTTCAA 120 consensus_8608#1 ------------------------------------------------------------ consensus_8608#0 TGTTGGGAAGAAACCGCCACCTGANCAAGCTAAAATATTTCAAAGTTATGAACCAATGCC 180 consensus_8608#1 ------------------------------------------------------------ consensus_8608#0 AACTTCTCGAGCTAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTG 240 consensus_8608#1 --TTTTTTTTTTAAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTG 58 ** * *********************************************** consensus_8608#0 GACAAAGTTGAACCCTAGCTAATCTACGGAACGTCGCTGAAAATTCGCCTAAAAACAAAA 300 consensus_8608#1 GACAAAGTTGAACCCTAGCTAATCTACGGAACGTCGCTGAAAATTCGCCTAAAAACAAAA 118 ************************************************************ consensus_8608#0 AAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCAGTGTATTTACTCCA 360 consensus_8608#1 AAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCAGTGTATTTACTCCA 178 ************************************************************ consensus_8608#0 ATACTTGTTGAAACACAGATTTTATCATCATGAGTTTCTTCCCAAACTGTCCCCCAGTAC 420 consensus_8608#1 ATACTTGTTGAAACACAGATTTTATCATCATGAGTTTCTTCCCAAACTGTCCCCCAGTAC 238 ************************************************************ consensus_8608#0 AAATCGAGGGCAAAACACCCGTTGCAGTCAGTTGCGAGGTTGTATACAGCTGGGTAAAAA 480 consensus_8608#1 AAATCCAGGGCAAAACACCCGTTGCAGTCAGTTGCGAGGTTGTATACAGCTGGGTAAAAA 298 ***** ****************************************************** consensus_8608#0 CATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTTGATGTCACATGGCAG 540 consensus_8608#1 CATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTT-GATGTCACATGGCAG 357 ******************************************** *************** consensus_8608#0 CGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATATGTTAAGT 600 consensus_8608#1 CGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATATGTTCAGT 417 ******************************************************** *** consensus_8608#0 TCCAAGCCAAGTGCTCACTTTCCAGCACATCGCTCAAAATCACAAATGATCTCTCAATGT 660 consensus_8608#1 TCCAAGCCAAGTGCTCACTTTCCAGA--ATCGCTCAAAATCACAAATGATCTCTCAAAGG 475 ************************* ***************************** * consensus_8608#0 CATCAAAACTAACCTTCAGGCCGAGGCCTTTTATAGTCTCTTTCACCTCGCTCATGAGCA 720 consensus_8608#1 CATCAAAA-TAAC----------------------------------------------- 487 ******** **** consensus_8608#0 GTATCATGACTGTCATGGTGCTTTGAGCCATGGGAATTGCGCTGTTCTTTAATGTCGTCC 780 consensus_8608#1 ------------------------------------------------------------ consensus_8608#0 ATTGGGGCATCTTGAGCAGTCTCTGGTGTATTCTGCTTGCCAAGGTGCCCATTGCCTGTA 840 consensus_8608#1 ------------------------------------------------------------ consensus_8608#0 ACTTGATCAGCATTTCTATGATCCCCCCGATGCATAACATGAGGGGGACTCTGCTTCCTC 900 consensus_8608#1 ------------------------------------------------------------ consensus_8608#0 TCCTGCTTTATCTTATTATCCTC 923 consensus_8608#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||