These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 931 fasta sequence [TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGTCTTGGAGGAGTAATTTTCCTCATATCGCTCGTGGGGTTTCTTGGTGCTTGGAAGAAAATTGCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTGTTCACAGTGCTTGCGTTTATTATCACAAATACCGGAACTGGCCATTCTGTCTCTGGGGTGAGATACAAAGAGTATCGTCTGCAGGATTATAGCTCTTGGTTTATCAAACAGCTGAATGACACTGAAAAATGGACTCACCTGAGAAGCTGTCTTGTGAAATCAGATGATTGTAATGGCTTGTCAAGAAGATACAAGACTCTGAAACAATACAAGCTTGCAGATCTTACTCCTATGGAGTCTGGTTGCTGCCGTCCACCGGCAGAGTGCGGGTACCCAGCTGTAAACGCTTCCTACTTTGATTTGAGCTATCATCCAGTCAGCACGAATGTCGACTGCAAACTGTACAAAAACGCACGCTCTGTTCTGTGCTATGATTGTGATTCTTGCAAAGCTGGGGTTGCTCAATACATGAAAACAGAGTGGAGGGTGGTAGCCATCTTTAACGTCATACTGTTTGTCATCTTGTCTTTCGTCTACTTCGTCGCGTGCTGTGCGCGCCGAAACACCGGAGAGAGCGACTCCAAGGTTCCTACAAGATGGCATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCATTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATGATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTCCCTTAACTTTAAAAAAAAAAAAAAAAAAA] [+] EMBL AK103857 [TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGTCTTGGAGGAGTAATTTTCCTCATATCGCTCGTGGGGTTTCTTGGTGCTTGGAAGAAAATTGCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTGTTCACAGTGCTTGCGTTTATTATCACAAATACCGGAACTGGCCATTCTGTCTCTGGGGTGAGATACAAAGAGTATCGTCTGCAGGATTATAGCTCTTGGTTTATCAAACAGCTGAATGACACTGAAAAATGGACTCACCTGAGAAGCTGTCTTGTGAAATCAGATGATTGTAATGGCTTGTCAAGAAGATACAAGACTCTGAAACAATACAAGCTTGCAGATCTTACTCCTATGGAGTCTGGTTGCTGCCGTCCACCGGCAGAGTGCGGGTACCCAGCTGTAAACGCTTCCTACTTTGATTTGAGCTATCATCCAGTCAGCACGAATGTCGACTGCAAACTGTACAAAAACGCACGCTCTGTTCTGTGCTATGATTGTGATTCTTGCAAAGCTGGGGTTGCTCAATACATGAAAACAGAGTGGAGGGTGGTAGCCATCTTTAACGTCATACTGTTTGTCATCTTGTCTTTCGTCTACTTCGTCGCGTGCTGTGCGCGCCGAAACACCGGAGAGAGCGACTCCAAGGTTCCTACAAGATGGCATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCATTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATGATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTC ] [+] EMBL C91612 [TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGTCTTGGAGGAGTAATTTTCCTCATATCGCTCGTGGGGTTTCTTGGTGCTTGGAAGAAAATTGCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTGTTCACAGTGCTTGCGTTTATTATCACAAATACCGGAACTGGCCATTCTGTCTCTGGGGTGAGATACAAAGAGTATCGTCTGCAGGATTATAGCTCTTGGTTTATCAAACAGCTGAATGACACTGAAAAATGGACTCACCTGAGAAGCTGTCTTGTGAAATCAGATGATTGTAATGGCTTGTCAAGAAGATACAAGACTCTGAAACAATACAAGCTTGCAGATCTTACTCCTATGGAGTCTGGTTGCTGCC ] [+] EMBL AU078629 [TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGTCTTGGAGGAGTAATTTTCCTCATATCGCNCGTGGGGTNTCTTNGTGCTTGGAAGAAAATTGCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTGTTCACAGTNCTTGCGTTTATTATCACAAATACCGG ] [+] EMBL AU058035 [ AGTCAGCACGAATGNCGACTGC AACTGTACAAAAACGCACGCTCTGTCCTGTGCTATGATTGTGATTCTTGCAAANCTGGGGTTGCTCAATACATGAAAACAGAGTGGAGGGTGGTAGCCATCTTTAACGTCATACTGTTTGTCANCTTGTCTTTCGTCTACTTCGTCGCGTGCTGTGCGCGCCGAAACACCGGAGAGAGCGACTCCAAGGTTCCTACAAGATGGCATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCATTGTTCAGTCAAGTCNCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATGATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTCCCTTAACTTTAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence [TTCGCCACGANGTAAATTAGCTTTTGCTATTGCTTGTAGTGGNATTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATNATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTCCCTTAACTTTACA] [+] EMBL AA751692 [TTCGCCACGANGTAAATTAGCTTTTGCTATTGCTTGTAGTGGNATTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATNATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTCCCTTAACTTTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8609#0 TTCTGGATGAGCACCCACAACGACGAATGCAGGCGGTCCTTGACGATCCCTGTCATGGGT 60 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 CTTGGAGGAGTAATTTTCCTCATATCGCTCGTGGGGTTTCTTGGTGCTTGGAAGAAAATT 120 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 GCTTGCTTGCTATGGACATATCTGGTAATGCTGTTCGTGGTTTTGGTGGCAATCATGGTG 180 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 TTCACAGTGCTTGCGTTTATTATCACAAATACCGGAACTGGCCATTCTGTCTCTGGGGTG 240 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 AGATACAAAGAGTATCGTCTGCAGGATTATAGCTCTTGGTTTATCAAACAGCTGAATGAC 300 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 ACTGAAAAATGGACTCACCTGAGAAGCTGTCTTGTGAAATCAGATGATTGTAATGGCTTG 360 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 TCAAGAAGATACAAGACTCTGAAACAATACAAGCTTGCAGATCTTACTCCTATGGAGTCT 420 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 GGTTGCTGCCGTCCACCGGCAGAGTGCGGGTACCCAGCTGTAAACGCTTCCTACTTTGAT 480 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 TTGAGCTATCATCCAGTCAGCACGAATGTCGACTGCAAACTGTACAAAAACGCACGCTCT 540 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 GTTCTGTGCTATGATTGTGATTCTTGCAAAGCTGGGGTTGCTCAATACATGAAAACAGAG 600 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 TGGAGGGTGGTAGCCATCTTTAACGTCATACTGTTTGTCATCTTGTCTTTCGTCTACTTC 660 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 GTCGCGTGCTGTGCGCGCCGAAACACCGGAGAGAGCGACTCCAAGGTTCCTACAAGATGG 720 consensus_8609#1 ------------------------------------------------------------ consensus_8609#0 CATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCA 780 consensus_8609#1 ---------------TTCGCCACGANGTA-AATTAGCTTTTGCTATTGCTTGTAGTGGNA 44 * * *** * ************************** * consensus_8609#0 TTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGG 840 consensus_8609#1 TTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGG 104 ************************************************************ consensus_8609#0 ATGATGATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGG 900 consensus_8609#1 ATGATNATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGG 164 ***** ****************************************************** consensus_8609#0 TCCCTTAACTTTAAAAAAAAAAAAAAAAAAA 931 consensus_8609#1 TCCCTTAACTTTACA---------------- 179 ************* * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||