|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1237 fasta sequence
[TTCAGACAATTAACATCACTAGGAGAGAAATCAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCC-GA-TCGACATCAACACCAAGACCGTCGTCCCGCGCTCGGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGTTCCAGGCGATCCACTGGCACGCGCCGTCGGAGCACACCATCAACGGCAGGCGCTTCCCGCTCGAGCTCCACCTCGTCCACAAGTCCGACGCCGACGGCGGCCTCGCCGTCATCTCCGTCCTCTACAAGCTCGGCGCCCCGGACTCCTTCTACCTCCAGTTCAAGGACCACCTCGCCGAGCTCGGCGCCGACGAGTGCGACTTCAGCAAGGAGGAGGCCCACGTCGCCGCCGGGCTGGTGCAGATGAGGTCGCTGCAGAAGCGCACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGACGCCGCCGTGCGGCGAGAACGTGGTGTGGAGCGTGCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAGCTGCACCTGCTCATGTCGCCATTGCCGACTAAGGACGCCAGGCCGGCGCAGCCGCTCAATGGCAGGGCCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCCAAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTGGTTTTTTGTATTTGATGTTGAGTTGATTTGATTAACATTTCGACGTATGATATGCACTATATATAATTAATTAACATCGCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAACTAGTGGGGGTGGGGATTAATTACTATATGCTTGGACATTTTTCCGTTCTTCAAGATTGACGCATCGATCGATAAATGTATATATTTGTAGCTAAGAAGGGGTAAATATACTAGGAGAGAATACACTCTATTGTCATTGAGTTTGTCTCTGTCAACGATTTGCTACTGACATT]
[+] EMBL AK070276 [TTCAGACAATTAACATCACTAGGAGAGAAATCAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCC GA TCGACATCAACACCAAGACCGTCGTCCCGCGCTCGGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGTTCCAGGCGATCCACTGGCACGCGCCGTCGGAGCACACCATCAACGGCAGGCGCTTCCCGCTCGAGCTCCACCTCGTCCACAAGTCCGACGCCGACGGCGGCCTCGCCGTCATCTCCGTCCTCTACAAGCTCGGCGCCCCGGACTCCTTCTACCTCCAGTTCAAGGACCACCTCGCCGAGCTCGGCGCCGACGAGTGCGACTTCAGCAAGGAGGAGGCCCACGTCGCCGCCGGGCTGGTGCAGATGAGGTCGCTGCAGAAGCGCACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGACGCCGCCGTGCGGCGAGAACGTGGTGTGGAGCGTGCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAGCTGCACCTGCTCATGTCGCCATTGCCGACTAAGGACGCCAGGCCGGCGCAGCCGCTCAATGGCAGGGCCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCCAAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTGGTTTTTTGTATTTGATGTTGAGTTGATTTGATTAACATTTCGACGTATGATATGCACTATATATAATTAATTAACATCGCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAACTAGTGGGGGTGGGGATTAATTACTATATGCTTGGACATTTTTCCGTTCTTCAAGATTGACGCATCGATCGATAAATGTATATATTTGTAGCTAAGAAGGGGTAAATATACTAGGAGAGAATACACTCTATTGTCATTGAGTTTGTCTCTGTCAACGATTTGCTACTGACATT]
[+] EMBL C72382 [ CATCACTAGGAGAGAAATCAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTTCGGCGAGGGGAGGTCGCAGTCGCCNGATTCGACATNAACAC ]
[+] EMBL C72746 [ TCACTAGGAGAGAAATCAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCC GA TCGACATCAACACCAAGACCGTCGTCCCGCGCTCGGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGTTCCAGGCGAT CANTGGCANGCGCCGTCGGAG AAANCATCAACGGCAAGC ]
consensusID : consensus_8611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[TTAGACAATTAACATCACTGGGAGAGAAATAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCCGATCGACATCAACACCAAGACCGTCGTCCCGCGCTCCGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGCTCCAGGCGATCCACTGGCACGCGCCGTCGGAGCACACCATCAACGGCAGGCGCTTCCCGCTCGAGCTCCACCTCGTCCACAAGTCCGACGCCGACGGCGGCCTCGCCGTCATCTNCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTNCAGGAATTCGCCAAGGGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTGGGTTTTTTGGATTTGATGGTTGAGNTGATTTGATTAACATTTTCGACGTATGATATGCACTATATATAATTAATTAACATCG]
[+] EMBL CB096616 [TTAGACAATTAACATCACTGGGAGAGAAATAAGAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCCGATCGACATCAACACCAAGACCGTCGTCCCGCGCTCCGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGCTCCAGGCGATCCACTGGCACGCGCCGTCGGAGCACACCATCAACGGCAGGCGCTTCCCGCTCGAGCTCCACCTCGTCCACAAGTCCGACGCCGACGGCGGCCTCGCCGTCATCTNCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTNCAGGAATTCGCCAAGGGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTGGGTTTTTTGGATTTGATGGTTGAGNTGATTTGATTAACATTTTCGACGTATGATATGCACTATATATAATTAATTAACATCG]
consensusID : consensus_8611#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[GGTGCAGATGAGGTCGCTGCAGAAGCGCACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGACGCCGCCGTGCGGCGAGAACGTGGTGTGGAGCGTGCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAGCTGCACCTGCTCATGTCGCCATTGCCGACCAAGGACGCCAGGCCGGCGCAGCCGCTCAATGGCAGGGCCGTCTTNTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCCAAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTGGTTTTTTGTATTTGATGTTGAGTTGATTTGATTAACATTTCGACGTATGATATGCACTATATATAATTAATTAACATCGCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAAAAAAAAAAAAAA]
[+] EMBL AU172479 [GGTGCAGATGAGGTCGCTGCAGAAGCGCACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGACGCCGCCGTGCGGCGAGAACGTGGTGTGGAGCGTGCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAGCTGCACCTGCTCATGTCGCCATTGCCGACCAAGGACGCCAGGCCGGCGCAGCCGCTCAATGGCAGGGCCGTCTTNTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCCAAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTGGTTTTTTGTATTTGATGTTGAGTTGATTTGATTAACATTTCGACGTATGATATGCACTATATATAATTAATTAACATCGCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8611#0 TTCAGACAATTAACATCACTAGGAGAGAAATCAAGAAACAAGCTAGCCAGCAATGGTGTC 60
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 ------------------------------------------------------------
consensus_8611#0 TCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCCTCGTCGGTCGCCGTCGCCTTCTCTCA 120
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 ------------------------------------------------------------
consensus_8611#0 TGCGGAAGGGAACGAGGGGCCGGACTTCACCTACATCGAAGGCGCCATGGACGGGCCGTC 180
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 ------------------------------------------------------------
consensus_8611#0 GAACTGGGGGAAGCTGAGCCCGGAGTACAGGATGTGCGGCGAGGGGAGGTCGCAGTCGCC 240
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 ------------------------------------------------------------
consensus_8611#0 GATCGACATCAACACCAAGACCGTCGTCCCGCGCTCGGACCTCGACACGCTGGACCGCAA 300
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 ------------------------------------------------------------
consensus_8611#0 CTACAACGCCGTGAACGCCACCATCGTCAACAACGGCAAGGACATCACCATGAAGTTCCA 360
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 ----------------------------TTAGACAATTAACATCACTGGGAGAGAAATAA 32
consensus_8611#0 CGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAGCCGTACAGGTTCCAGGCGATCCACTG 420
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 GAAACAAGCTAGCCAGCAATGGTGTCTCTCCGCGCGGCCATCGTCCTCGTCGTCGCCGCC 92
consensus_8611#0 GCACGCGCCGTCGGAGCACACCATCAACGGCAGGCGCTTCCCGCTCGAGCTCCACCTCGT 480
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 TCGTCGGTCGCCGTCGCCTTCTCTCATGCGGAAGGGAACGAGGGGCCGGACTTCACCTAC 152
consensus_8611#0 CCACAAGTCCGACGCCGACGGCGGCCTCGCCGTCATCTCCGTCCTCTACAAGCTCGGCGC 540
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 ATCGAAGGCGCCATGGACGGGCCGTCGAACTGGGGGAAGCTGAGCCCGGAGTACAGGATG 212
consensus_8611#0 CCCGGACTCCTTCTACCTCCAGTTCAAGGACCACCTCGCCGAGCTCGGCGCCGACGAGTG 600
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 TGCGGCGAGGGGAGGTCGCAGTCGCCGATCGACATCAACACCAAGACCGTCGTCCCGCGC 272
consensus_8611#0 CGACTTCAGCAAGGAGGAGGCCCACGTCGCCGCCGGGCTGGTGCAGATGAGGTCG----C 656
consensus_8611#2 ---------------------------------------GGTGCAGATGAGGTCG----C 17
consensus_8611#1 TCCGACCTCGACACGCTGGACCGCAACTACAACGCCGTGAACGCCACCATCGTCAACAAC 332
** *** *
consensus_8611#0 TGCAGAAGCG-CACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGA-CGCCGCCGTG 714
consensus_8611#2 TGCAGAAGCG-CACGGGGAGCTACTTCCGGTACGGCGGCTCGCTGACGA-CGCCGCCGTG 75
consensus_8611#1 GGCAAGGACATCACCATGAAGTTCCACGGCGAGGTCGGCCAGGTGATCATCGCCGGGAAG 392
*** * *** ** * * * * * * **** * *** * ***** *
consensus_8611#0 CGGCGAGAACGTGGTGTGGAGCGT--GCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAG 772
consensus_8611#2 CGGCGAGAACGTGGTGTGGAGCGT--GCTCGGGAAGGTGAGGGAGATCAGCCAGGAGCAG 133
consensus_8611#1 CCGTACAGGCTCCAGGCGATCCACTGGCACGCGCCGTCGGAGCACACCATCAACGGCAGG 452
* * * * * * ** ** * * * * * * ** * * * *
consensus_8611#0 CTGCACCTGCTCATGTCGCCATTGCCGACTAAGGACGCCAGGCCGGCGCAGCCGCTCAAT 832
consensus_8611#2 CTGCACCTGCTCATGTCGCCATTGCCGACCAAGGACGCCAGGCCGGCGCAGCCGCTCAAT 193
consensus_8611#1 CGCTTCCCGCTCGAGCT-CCACC-TCGTCCACAAGTCCGACGCCGACGGCGGC-CTCGCC 509
* ** **** * *** ** * * * * **** ** * * ***
consensus_8611#0 GGCAGGGCCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCC 892
consensus_8611#2 GGCAGGGCCGTCTTNTACTACAACCCGCCGGGCAGCGCCGTCTCCTTCCAGGAATTCGCC 253
consensus_8611#1 GTCATCTNCGTCTTCTACTACAACCCGCCGGGCAGCGCCGTCTCCTTNCAGGAATTCGCC 569
* ** ****** ******************************** ************
consensus_8611#0 AAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTT-GGTTTTTTGTATTTGATG-TT 950
consensus_8611#2 AAGTGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTTGGTTTTTTGTATTTGATG-TT 312
consensus_8611#1 AAGGGATTCTTTCTTTTTTTTTTCTTTCTTTTTTTTTTGGGTTTTTTGGATTTGATGGTT 629
*** ********************************** ********* ******** **
consensus_8611#0 GAGTTGATTTGATTAACATTT-CGACGTATGATATGCACTATATATAATTAATTAACATC 1009
consensus_8611#2 GAGTTGATTTGATTAACATTT-CGACGTATGATATGCACTATATATAATTAATTAACATC 371
consensus_8611#1 GAGNTGATTTGATTAACATTTTCGACGTATGATATGCACTATATATAATTAATTAACATC 689
*** ***************** **************************************
consensus_8611#0 GCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAACTAGT 1069
consensus_8611#2 GCAAAATACTTTTTTTTTCGAGAATACATAAAGGGCTCGCGTATCTTTGTATTAAAAAAA 431
consensus_8611#1 G----------------------------------------------------------- 690
*
consensus_8611#0 GGGGGTGGGGATTAATTACTATATGCTTGGACATTTTTCCGTTCTTCAAGATTGACGCAT 1129
consensus_8611#2 AAAAAAA----------------------------------------------------- 438
consensus_8611#1 ------------------------------------------------------------
consensus_8611#0 CGATCGATAAATGTATATATTTGTAGCTAAGAAGGGGTAAATATACTAGGAGAGAATACA 1189
consensus_8611#2 ------------------------------------------------------------
consensus_8611#1 ------------------------------------------------------------
consensus_8611#0 CTCTATTGTCATTGAGTTTGTCTCTGTCAACGATTTGCTACTGACATT 1237
consensus_8611#2 ------------------------------------------------
consensus_8611#1 ------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||