These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 687 fasta sequence [TGTGCTCAACCACAAACAACCAAAGCAGCATGTTCTATGCAATACCGAGCTGCTGTCTCTGCAATCTGATATGGATCAACTGTTCCTGGAGAAGATGGAAGCAGAGACTCAATGCTTCATCCTGACAAGAGCATCGCAAGCTTGGAATCCCCTGACTGAGGATCAAGCTGCTATTTTTG-ACATT-CAGAAATCTCTACCTGAGGATCACAAACAGCTTGAAGCTAAGCTACGGCACA-CCGAGAACAGGGCA-CTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACA-GTGCA-AAGATCTTGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGTTTTGCTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGCCCTCTTCCTCTGAATTTGTACCTA-CCTGAGGTTAGAAAATCCGGCGCCCATGAGCCTTTGTGTAGGCA-TTCTTGAAAAGTT-CCTTATTGTAATTTACTAAGCATTGGTCACCCTATAATTTTTCAAGTCTGTAACATCAACTCAATTTTGCTAA-GAATCTCCTCTTATCTTTATGGGAATTCAATCACATGTACTTCTCGATTATCTGGATTCTGTAAATGTCAAAGTTCCTATATAAATGTATTTCTTTCAGACCGTATAAAAAAAA] [+] EMBL CA754590 [TGTGCTCAACCACAAACAACCAAAGCAGCATGTTCTATGCAATACCGAGCTGCTGTCTCTGCAATCTGATATGGATCAACTGTTCCTGGAGAAGATGGAAGCAGAGACTCAATGCTTCATCCTGACAAGAGCATCGCAAGCTTGGAATCCCCTGACTGAGGATCAAGCTGCTATTTTTG ACATT CAGAAATCTCTACCTGAGGATCACAAACAGCTTGAAGCTAAGCTACGGCACA CCGAGAACAGGGCA CTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACA GTGCA AAGATCTTGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGGTTTGCTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGGCCTCTTCCTCTGGATTTGTACCTA CCTGAGGGTAGAAAATCCGGCGCCCATGAGCCTTTGTGTAGGCA TTCTTGAAAAGTT CCTTATTGGAATTTACTCAGCATTGGGCACCCCATTAATTTTCAGGCCTGTAACATCAACTCATTTTTGCTAA GAATCTCCTCTTATCTTTATGGGAA ] [-] EMBL CB648697 [ AAGATGGAAGCAGAGACTCAATGCTTCATCCTGACAAGAGCATCGCAAGCTTGGAATCCCCTGACTGAGGATCAAGCTGCTATTTTTG ACATT CAGAAATCTTTACCTGAGGATCACAAACAGCTTGAAGCTAAGTTACGGCACA CCGAGAACAGGGCA CTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACA GTGCA AAGATCTTGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGTTTTGCTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGCCCTCTTCCTCTGAATTTGTACCTA CCTGAGGTTAGAAAATCCGGCGCCAATGAGCCTTTGTGTAGGCA TTCTTGAAAATTTGGGGTATTGTAATTTACTAAGCATTGGTCACCCTATAATTTTTCAAGTCTGTAACATCAACTCAATTTTTTTAAGGACTCT ] [+] EMBL BM420537 [ TGCTATTTTTGCACATTCCAGAAATCTCTACCTGAGGATCACAAACAGCTCGAAGCTAAGCTACGGCACACCCGAGAACA GGCACCTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACACGT CACAAGATCTTGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGTTTTGCTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGCCCTCTTCCTCTGAATTTGTACCTACCCTGAGGTTAGAAAATCCGGCG CCATGAGCCTTTGTGTAGGCACTTCTTGAAAAGTT CCTTATTGTAATTTACTAAGCCTTGGTCACCCTATAATTTTTCAAGTCTGTAACATCAACTCAATTTTGCTAG TAATCTCTTCTTATCTTTACTGTACTTCAATCACATGTACTTCTCGATTATCTGGATTCTGTAAATGTCAAAGTTCCTATATAAATGTATTTCTTTCAGACCGTATAAAAAAAA] consensusID : consensus_8614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence [TTCCTCCTTTTAGGATCCCTCCAAGATCGAGGCCGATCCCCACCATGCGCGCCCACCGATCCCGACAGCTCGTGTCCCGCGATCCCATGGCGGTTCTCTGATCCCATCTGGCTCGCGAAGCCGCCGCGTTTTGACGGGAATTGCGTGGGCTGCGGGCGGCTGGACGCCATGGATTCCGGCGGCAACAGCGTGAATTCTGCGGTGGAGTCGGTGGCGGAGTCGCCGGCGCCGGCTTCACCGGCGAGCAATCCCACCGCACCCGCCGCGGTCACCAAGGGGCGTGGGCTACTGCGGTGGCGGTGTATCCCCCGGGAACACCACGAGGAGGGCTCACCTGGCTCCGGCGGCGGAAAAAGGACATAACCCGACAAAGAAGGTTCCCACCGCGATGAACACCACAACAAACTGGACGGACCAAAACAGCGAAGCTCTGCTTGATCTTGCCTGCACCT] [+] EMBL CB672302 [TTCCTCCTTTTAGGATCCCTCCAAGATCGAGGCCGATCCCCACCATGCGCGCCCACCGATCCCGACAGCTCGTGTCCCGCGATCCCATGGCGGTTCTCTGATCCCATCTGGCTCGCGAAGCCGCCGCGTTTTGACGGGAATTGCGTGGGCTGCGGGCGGCTGGACGCCATGGATTCCGGCGGCAACAGCGTGAATTCTGCGGTGGAGTCGGTGGCGGAGTCGCCGGCGCCGGCTTCACCGGCGAGCAATCCCACCGCACCCGCCGCGGTCACCAAGGGGCGTGGGCTACTGCGGTGGCGGTGTATCCCCCGGGAACACCACGAGGAGGGCTCACC ] [+] EMBL CB648696 [ TGAATTCTGCCCTGGAGTCGGTGGCGGAGTCGCCGGCGCCGGCTTCACCGGCGAGCAATCCCACCGCACCCGCCGCGGTCACCAAGGGGCGTGGGCTACGGCGGTGGCGGCGTATCCCCCGGGAACACCACGAGGAGGGCTCACCTGGCTCCGGCGGCGGAAAAAGGACATAACCCGACAAAGAAGGTTCCCACCGCGATGAACACCACAACAAACTGGACGGACCAAAACAGCGAAGCTCTGCTTGATCTTGCCTGCACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8614#0 TGTGCTCAACCACAAACAACCAAAGCAGCATGTTCTATGCAATACCGAGCTGCTGTCTCT 60 consensus_8614#1 ------------------------------------------------------------ consensus_8614#0 GCAATCTGATATGGATCAACTGTTCCTGGAGAAGATGGAAGCAGAGACTCAATGCTTCAT 120 consensus_8614#1 ------------------------------------------------------------ consensus_8614#0 CCTGACAAGAGCATCGCAAGCTTGGAATCCCCTGACTGAGGATCAAGCTGCTATTTTTGA 180 consensus_8614#1 ---------------------------TTCCTCCTTTTAGGATC---CCTCCAAGATCGA 30 * ** * ****** * * * * ** consensus_8614#0 CATTCAGAAATCTCTACCTGAGGATCACAAACAGCTTGA-AGCTAAGCTACGGCACACCG 239 consensus_8614#1 GGCC----GATCCCCACCATGCGCGCCCACCGATCCCGACAGCTCGTGTCCCGCGATCCC 86 *** * *** * * ** * * ** **** * * ** ** consensus_8614#0 AGAACAGGGCACTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACAGTGCAAAGATC 299 consensus_8614#1 ATGGCGGTTCTCTGATCCCATCTG----GCTCGCGAAGCC-GCCGCGTTTTG-ACGGGAA 140 * * * * ***** * * * * * * ***** * ** ** * * consensus_8614#0 TTGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGTTTT 359 consensus_8614#1 TTGCGTGGGCTGCGGGCGGCTGGACGCCATGGATTCCGGCGGCAACAGCGTGA--ATTCT 198 **** ** ** * * * ** ** * ** * *** * ** * consensus_8614#0 GCTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGC 419 consensus_8614#1 GCG--GTGGAGTCGGTGGCGGAGT-CGCCGGCGCCGG---CTTCACCGGCGAGCAAT--C 250 ** ** *** ** * ** * ** ** *** **** ** * ** ** * consensus_8614#0 CCTCTTCCTCTGAATTTGTACCTACCTGAGGTTAGAAAATCCGGCGCCCATGAGCCTTTG 479 consensus_8614#1 CCACCGCACCCG---CCGCGGTCACCAAGGGGCGTGGGCTACTGCGGTGGCGG-----TG 302 ** * * * * * *** ** * * *** * ** consensus_8614#0 TGTAGGCATTCTTGAAAAGTTCCTTATTGTAATTTACTAAGCATTGGTCACCCTATAATT 539 consensus_8614#1 TAT-----CCCCCGGGAACACCACGAGGAGGGCTCACCTGGCTCCGGCGGCGGAAAAAGG 357 * * * * ** * * * ** ** ** * * ** consensus_8614#0 TTTCAAGTCTGTAACATCAACTCAATTTTGCTAAGAATCTCCTCTTATCTTTATGGGAAT 599 consensus_8614#1 ACATAACCCGACAA-AGAAGGTTCCCACCGCGATGAACACCACAACAAACTGGACGGACC 416 ** * ** * * * ** * *** * * * *** consensus_8614#0 TCAATCAC-ATGTACTTCTCGAT--TATCTGGATTCTGTAAATGTCAAAGTTCCTATATA 656 consensus_8614#1 AAAACAGCGAAGCTCTGCTTGATCTTGCCTGCACCT------------------------ 452 ** * * * ** ** *** * *** * consensus_8614#0 AATGTATTTCTTTCAGACCGTATAAAAAAAA 687 consensus_8614#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||