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Oryza sativa
cluster # 8616 cluster # 8616       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8616#0 length = 1081 sequences # 2  
consensus_8616#1 length = 784 sequences # 1  
consensus_8616#2 length = 689 sequences # 1  
consensus_8616#3 length = 469 sequences # 1  

consensusID : consensus_8616#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1081
fasta sequence
                              [CCCCTGAACGTGATCACTTCTGTTAAGCTGACCATTATTTATCCAAAAGATTAACAAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAACAAAAACTTCTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAGTTAGCAAGGTAAGTTAATTAGAGAGTGCATGACACTCCTCTGGATAATAAAGCTTTAAGCAAGATTTGTTACTAAAACCTTGTGTGCTTTTGCCCTGGCCAAAGTGCTTAGTAGCATATTTCAAGTCACTATATAGGGATCTGTACCAGCAGTGATTCGGGCACACACCAATGAGCCTGAGTTGGGGTGAATTAAGGAATCTGCCTGCCTGGCTCAAGTGGATGATGAGTGAAGCAGTAGTGGGACACTCGACAGTAGCAGCAGCACCATCCACAATCCATGTATAATTAGCAGGGGGATCACTGGCTGCAAGTGACTGGGCCACCACTCATCACGTCATACTCATGCTAAATAAATGGAGAGACGAGATTCACTCCACATGATAACAGCTCCCCGAAGGATCCCAAGCAGAAGCAGCAGCTGTATCGTGCTGTCTGTCATGCTTGGAGAACCGTTAATCACGATGCATCATCCCTCACTGACAGAGTGACAGACATGTCTTCTCCAAACAAACCTGCAGGCCCTCAAGTCAATTACTGGTAGTTGGTGTTACTACTAAGACGTACTTTGTGGATACACATGGCAATTGACACTTGTGCAGGGTAGCAAGGAGGACATAACCACACTTCCAACTTCCAAGCTAGGATGGGAATAGTTCAATATGTGGCAGGATGATACTTCAGACTTGTTGAGAAGCCATTGATCCATAATATGCCCCTGCTGATGGAATTGTATGATTGCCCCAAGTTAAATTAGTGGCGTGGAGTGAAGGGAGAGTCAATGCTTCATCACATAATAGATTGCTGTGGCTGCCACCTTAAGAGTGTGGCAAGTGTTGGCTTTGCTCATGGGCAACCACTCCTCACACACTGATTGGTGGGCAAACCTTATTCTGATGCCATGTGATAGAATCATCT]

[+] EMBL CB631934             [CCCCTGAACGTGATCACTTCTGTTAAGCTGACCATTATTTATCCAAAAGATTAACAAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAACAAAAACTTCTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAGTTAGCAAGGTAAGTTAATTAGAGAGTGCATGACACTCCTCTGGATAATAAAGCTTTAAGCAAGATTTGTTACTAAAACCTTGTGTGCTTTTGCCCTGGCCAAAGTGCTTAGTAGCATATTTCAAGTCACTATATAGGGATCTGTACCAGCAGTGATTCGGGCACACACCAATGAGCCTGAGTTGGGGTGAATTAAGGAATCTGCCTGCCTGGCTCAAGTGGATGATGAGTGAAGCAGTAGTGGGACACTCGACAGTAGCAGCAGCACCATCCACAATCCATGTATAATTAGCAGGGGGATCACTGGCTGCAAGTGACTGGGCCACCACTCATCACGTCATACTCATGCTAAATAAATGGAGAGACGAGATTCACTCCACATGATAACAGCTCCCCGAAGGATCCCAAGCAGAAGCAGCAGCTGTATCGTGCTGTCTGTCATGCTTGGAGAACCGTTAATCACGATGCATCATCCCTCACTGACAGAGTGACAGACATGTCTTCTCCAAACAAACCTGCAGGCCCTCAAGTCAATTACTGGTAGTTGGTGTTACTACTAAGACGTACTTTGTGGATACACATGGCAATTGACACTTGTGCAGGGTAGCAAGGAGGACATAACCACACTTCCAA                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB631933             [                                                                                                                                                                                                                                                                                                                                                                 AATTAAGGAATATGCGTGCCTGGCTCAAGTGGATGATGAGTGAAGCAGTAGTGGGACACTCGACAGTAGCAGCAGCACCATCCACAATCCATGTATAATTAGCAGGGGGATCACTGGCTGCAAGTGACTGGGCCACCACTCATCACGTCATACTCATGATAAATAAATGGAGAGACGAGATTCACTCCACATGATAACAGCTCCCTGAAGGATCCCAAGCAGAAGCAGCAGCTGTATCGTGCTGTCTGTCATGCTTGGAGAACCGTTAATCACGATGCATCATCCCTCACTGACAGAGTGACAGACATGTCTTCTCCAAACAAACCTGCAGGCCCTCAAGTCAATTACTGGTAGTTGGTGTTACTAATAAGACGTACTTTGTGGATACACATGGCAATTGACACTTGTGCAGGGTAGCAAGGAGGACATAACCACACTTCCAACTTCCAAGCTAGGATGGGAATAGTTCAATATGTGGCAGGATGATACTTCAGACTTGTTGAGAAGCCATTGATCCATAATATGCCCCTGCTGATGGAATTGTATGATTGCCCCAAGTTAAATTAGTGGCGTGGAGTGAAGGGAGAGTCAATGCTTCATCACATAATAGATTGCTGTGGCTGCCACCTTAAGAGTGTGGCAAGTGTTGGCTTTGCTCATGGGCAACCACTCCTCACACACTGATTGGTGGGCAAACCTTATTCTGATGCCATGTGATAGAATCATCT]


>consensus_8616#0 CCCCTGAACGTGATCACTTCTGTTAAGCTGACCATTATTTATCCAAAAGATTAACAAATC TTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAACAAAAACTTCTGAG AGCAGCTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAGTTAGCAAGGTAAGTTA ATTAGAGAGTGCATGACACTCCTCTGGATAATAAAGCTTTAAGCAAGATTTGTTACTAAA ACCTTGTGTGCTTTTGCCCTGGCCAAAGTGCTTAGTAGCATATTTCAAGTCACTATATAG GGATCTGTACCAGCAGTGATTCGGGCACACACCAATGAGCCTGAGTTGGGGTGAATTAAG GAATCTGCCTGCCTGGCTCAAGTGGATGATGAGTGAAGCAGTAGTGGGACACTCGACAGT AGCAGCAGCACCATCCACAATCCATGTATAATTAGCAGGGGGATCACTGGCTGCAAGTGA CTGGGCCACCACTCATCACGTCATACTCATGCTAAATAAATGGAGAGACGAGATTCACTC CACATGATAACAGCTCCCCGAAGGATCCCAAGCAGAAGCAGCAGCTGTATCGTGCTGTCT GTCATGCTTGGAGAACCGTTAATCACGATGCATCATCCCTCACTGACAGAGTGACAGACA TGTCTTCTCCAAACAAACCTGCAGGCCCTCAAGTCAATTACTGGTAGTTGGTGTTACTAC TAAGACGTACTTTGTGGATACACATGGCAATTGACACTTGTGCAGGGTAGCAAGGAGGAC ATAACCACACTTCCAACTTCCAAGCTAGGATGGGAATAGTTCAATATGTGGCAGGATGAT ACTTCAGACTTGTTGAGAAGCCATTGATCCATAATATGCCCCTGCTGATGGAATTGTATG ATTGCCCCAAGTTAAATTAGTGGCGTGGAGTGAAGGGAGAGTCAATGCTTCATCACATAA TAGATTGCTGTGGCTGCCACCTTAAGAGTGTGGCAAGTGTTGGCTTTGCTCATGGGCAAC CACTCCTCACACACTGATTGGTGGGCAAACCTTATTCTGATGCCATGTGATAGAATCATC T



consensusID : consensus_8616#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 784
fasta sequence
                              [TTTTTTTTTTTTTACCCCTGAACGTGATCACTTCTGCTACCCTGACCATTATTTATCCAAAAGATTAACAAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAAAACAAAAACTTCTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAGTTAGCAAGGTAAGTTAATTAGAGAGTGCATGACACTCCTCTGGATAATAAAGCTTTAAGCAAGATTTGTTACTAAAACCTTGTGTGCTTTTGCCCTGGCCAAAGTGCTTAGTAGCATATTTCAAGTCACTATATAGGGATCTGTACCAGCAGTGATTCGGGCACACACCAATGAGCCTGAGTTGGGGTGAATTAAGGAATCTGCCTGCCTGGCTCAAGTGGATGATGAGTGAAGCAGTAGTGGGACACTCGACAGTAGCAGCAGCACCATCCACAATCCATGTATAATTAGCAGGGGGATCACTGGCTGCAAGTGACTGGGCCACCACTCATCACGTCATACTCATGCTACTACACAAGAGAGATCCAGTGAGACCACCAGTATAAACGACGAGATGATCACAAAAATTAAGGACTGTTCAGATGATTATCATGATGGACGGAAAAAAGAAGAAGAGAGAAAAGAGGAGAAGAAGTGTGACAATAAATGGAGAGACGAGATTCACTCCACATGATAACAGCTCCCCGAAGGATCCCAAGCAGAAGCAGCAGCTGTATCGTGCTGTCTGTCATGCTTGGAGAACCGTTAATCACGATGCATCATC]

[+] EMBL CB629722             [TTTTTTTTTTTTTACCCCTGAACGTGATCACTTCTGCTACCCTGACCATTATTTATCCAAAAGATTAACAAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAAAACAAAAACTTCTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAGTTAGCAAGGTAAGTTAATTAGAGAGTGCATGACACTCCTCTGGATAATAAAGCTTTAAGCAAGATTTGTTACTAAAACCTTGTGTGCTTTTGCCCTGGCCAAAGTGCTTAGTAGCATATTTCAAGTCACTATATAGGGATCTGTACCAGCAGTGATTCGGGCACACACCAATGAGCCTGAGTTGGGGTGAATTAAGGAATCTGCCTGCCTGGCTCAAGTGGATGATGAGTGAAGCAGTAGTGGGACACTCGACAGTAGCAGCAGCACCATCCACAATCCATGTATAATTAGCAGGGGGATCACTGGCTGCAAGTGACTGGGCCACCACTCATCACGTCATACTCATGCTACTACACAAGAGAGATCCAGTGAGACCACCAGTATAAACGACGAGATGATCACAAAAATTAAGGACTGTTCAGATGATTATCATGATGGACGGAAAAAAGAAGAAGAGAGAAAAGAGGAGAAGAAGTGTGACAATAAATGGAGAGACGAGATTCACTCCACATGATAACAGCTCCCCGAAGGATCCCAAGCAGAAGCAGCAGCTGTATCGTGCTGTCTGTCATGCTTGGAGAACCGTTAATCACGATGCATCATC]


>consensus_8616#1 TTTTTTTTTTTTTACCCCTGAACGTGATCACTTCTGCTACCCTGACCATTATTTATCCAA AAGATTAACAAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAA AACAAAAACTTCTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAG TTAGCAAGGTAAGTTAATTAGAGAGTGCATGACACTCCTCTGGATAATAAAGCTTTAAGC AAGATTTGTTACTAAAACCTTGTGTGCTTTTGCCCTGGCCAAAGTGCTTAGTAGCATATT TCAAGTCACTATATAGGGATCTGTACCAGCAGTGATTCGGGCACACACCAATGAGCCTGA GTTGGGGTGAATTAAGGAATCTGCCTGCCTGGCTCAAGTGGATGATGAGTGAAGCAGTAG TGGGACACTCGACAGTAGCAGCAGCACCATCCACAATCCATGTATAATTAGCAGGGGGAT CACTGGCTGCAAGTGACTGGGCCACCACTCATCACGTCATACTCATGCTACTACACAAGA GAGATCCAGTGAGACCACCAGTATAAACGACGAGATGATCACAAAAATTAAGGACTGTTC AGATGATTATCATGATGGACGGAAAAAAGAAGAAGAGAGAAAAGAGGAGAAGAAGTGTGA CAATAAATGGAGAGACGAGATTCACTCCACATGATAACAGCTCCCCGAAGGATCCCAAGC AGAAGCAGCAGCTGTATCGTGCTGTCTGTCATGCTTGGAGAACCGTTAATCACGATGCAT CATC



consensusID : consensus_8616#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence
                              [TTTTTTTTTTTTTTTTGATCACTTCTGTTAAGCTGACCATTATTTATCCAAAAGATTAACAAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAACAAAAACTTCTGAGAGCAGTTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAGTTAGCAAGGTAAGTTAATTAGAGAGGGCATGACACTCCTCTGGATAATAAAGCTTTAAGCAAGATTTGTTACTAAAACCTTGGGGGCTTTTGCCCTGGCCAAAGTGCTTAGTAGCATATTTCAAGTCACTATATAGGGATCTGTACCAGCAGTGATTCGGGCACACACCAATGGGCCTGAGTTGGGGTGAATTAAGGAATTTGCCTGCCTGGCTCAGGTGGATGATGAGGGAAGCATTAGTGGGACACTCGACAGTAGCAGCAGCCCCATCCACAATCAATGTATAATTAGCAGGGGGATTACTGGCTGCAAGTGACTGGGCCACCACTCATAACGTCATACTCATGCTAATACAAAAGAGAGATCCCGGGAGACCACCACGATAAACCAGGCGCTTCCCACGCGAATTCCGGACGGTTGCGGATGATTAATGTGGACGGGCCGAACACCCACAACCCATCGACCTCCCGCCCCATACCTGGGCCCTCTGAATGGGAAAAACGAGATTTATTGCCACAGA]

[+] EMBL CA761580             [TTTTTTTTTTTTTTTTGATCACTTCTGTTAAGCTGACCATTATTTATCCAAAAGATTAACAAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAACAAAAACTTCTGAGAGCAGTTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAGTTAGCAAGGTAAGTTAATTAGAGAGGGCATGACACTCCTCTGGATAATAAAGCTTTAAGCAAGATTTGTTACTAAAACCTTGGGGGCTTTTGCCCTGGCCAAAGTGCTTAGTAGCATATTTCAAGTCACTATATAGGGATCTGTACCAGCAGTGATTCGGGCACACACCAATGGGCCTGAGTTGGGGTGAATTAAGGAATTTGCCTGCCTGGCTCAGGTGGATGATGAGGGAAGCATTAGTGGGACACTCGACAGTAGCAGCAGCCCCATCCACAATCAATGTATAATTAGCAGGGGGATTACTGGCTGCAAGTGACTGGGCCACCACTCATAACGTCATACTCATGCTAATACAAAAGAGAGATCCCGGGAGACCACCACGATAAACCAGGCGCTTCCCACGCGAATTCCGGACGGTTGCGGATGATTAATGTGGACGGGCCGAACACCCACAACCCATCGACCTCCCGCCCCATACCTGGGCCCTCTGAATGGGAAAAACGAGATTTATTGCCACAGA]


>consensus_8616#2 TTTTTTTTTTTTTTTTGATCACTTCTGTTAAGCTGACCATTATTTATCCAAAAGATTAAC AAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAACAAAAACTT CTGAGAGCAGTTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAGTTAGCAAGGTA AGTTAATTAGAGAGGGCATGACACTCCTCTGGATAATAAAGCTTTAAGCAAGATTTGTTA CTAAAACCTTGGGGGCTTTTGCCCTGGCCAAAGTGCTTAGTAGCATATTTCAAGTCACTA TATAGGGATCTGTACCAGCAGTGATTCGGGCACACACCAATGGGCCTGAGTTGGGGTGAA TTAAGGAATTTGCCTGCCTGGCTCAGGTGGATGATGAGGGAAGCATTAGTGGGACACTCG ACAGTAGCAGCAGCCCCATCCACAATCAATGTATAATTAGCAGGGGGATTACTGGCTGCA AGTGACTGGGCCACCACTCATAACGTCATACTCATGCTAATACAAAAGAGAGATCCCGGG AGACCACCACGATAAACCAGGCGCTTCCCACGCGAATTCCGGACGGTTGCGGATGATTAA TGTGGACGGGCCGAACACCCACAACCCATCGACCTCCCGCCCCATACCTGGGCCCTCTGA ATGGGAAAAACGAGATTTATTGCCACAGA



consensusID : consensus_8616#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence
                              [TTTTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCATGCCTGATCAAGTTAGCAAGGTAAGTTAATTAGAGCAGTGCATGACCACTCCTCTGGCATAATCAAAGCTTTAAGCAAGCATTGGTTNCTCAAACACCTTGTGTGCTTTTGCCCTGGCCCAAAGTGCTTCAGTCAGCATCATTTCCAAGTCCACTCATCATCAGGGATCTTGTACCAGCAGGTGCATTCGGGCCACNCACACACCCAATGCAGCACTGCAGGTTGGGGTGCAATTCAAGTGCAATCCTGCCCTTGCCCTTGCGCTCCAATGTTGGCATTGATCGCAGCTGCACACGCCCAGTCAGTGGTGCACCACCTCTGCACCATGCTCAGCCAGCCCAGCCCACCNATCCCACCACATCCCACATTGCTCATCACATTTACAGCCAGTGGTGTGCATCAACATTGGCTTGCCCAAGCTTGCACCTTGG]

[-] EMBL BM420703             [TTTTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCATGCCTGATCAAGTTAGCAAGGTAAGTTAATTAGAGCAGTGCATGACCACTCCTCTGGCATAATCAAAGCTTTAAGCAAGCATTGGTTNCTCAAACACCTTGTGTGCTTTTGCCCTGGCCCAAAGTGCTTCAGTCAGCATCATTTCCAAGTCCACTCATCATCAGGGATCTTGTACCAGCAGGTGCATTCGGGCCACNCACACACCCAATGCAGCACTGCAGGTTGGGGTGCAATTCAAGTGCAATCCTGCCCTTGCCCTTGCGCTCCAATGTTGGCATTGATCGCAGCTGCACACGCCCAGTCAGTGGTGCACCACCTCTGCACCATGCTCAGCCAGCCCAGCCCACCNATCCCACCACATCCCACATTGCTCATCACATTTACAGCCAGTGGTGTGCATCAACATTGGCTTGCCCAAGCTTGCACCTTGG]


>consensus_8616#3 TTTTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCATGCCTGATCAAGTTAGCAAGGT AAGTTAATTAGAGCAGTGCATGACCACTCCTCTGGCATAATCAAAGCTTTAAGCAAGCAT TGGTTNCTCAAACACCTTGTGTGCTTTTGCCCTGGCCCAAAGTGCTTCAGTCAGCATCAT TTCCAAGTCCACTCATCATCAGGGATCTTGTACCAGCAGGTGCATTCGGGCCACNCACAC ACCCAATGCAGCACTGCAGGTTGGGGTGCAATTCAAGTGCAATCCTGCCCTTGCCCTTGC GCTCCAATGTTGGCATTGATCGCAGCTGCACACGCCCAGTCAGTGGTGCACCACCTCTGC ACCATGCTCAGCCAGCCCAGCCCACCNATCCCACCACATCCCACATTGCTCATCACATTT ACAGCCAGTGGTGTGCATCAACATTGGCTTGCCCAAGCTTGCACCTTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8616#1      TTTTTTTTTTTTTACCCCTGAACGTGATCACTTCTGCTACCCTGACCATTATTTATCCAA 60
consensus_8616#2      TTTTTTTTTTTTTTT---------TGATCACTTCTGTTAAGCTGACCATTATTTATCCAA 51
consensus_8616#0      --------------CCCCTGAACGTGATCACTTCTGTTAAGCTGACCATTATTTATCCAA 46
consensus_8616#3      ------------------------------------------------------------
                                                                                  

consensus_8616#1      AAGATTAACAAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAA 120
consensus_8616#2      AAGATTAACAAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAA 111
consensus_8616#0      AAGATTAACAAATCTTTGTATACACACGGCAAGCCACCTATCCTTCTCTTAAAAAAAAAA 106
consensus_8616#3      ------------------------------------------------------------
                                                                                  

consensus_8616#1      AACAAAAACTTCTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAG 180
consensus_8616#2      --CAAAAACTTCTGAGAGCAGTTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAG 169
consensus_8616#0      --CAAAAACTTCTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCATTGCCTGATCAAG 164
consensus_8616#3      ---------TTTTGAGAGCAGCTCAAATGTGCTGAGAGCTGATGTCAT-GCCTGATCAAG 50
                               ** ********* ************************** ***********

consensus_8616#1      TTAGCAAGGTAAGTTAATTAGAG-AGTGCATGAC-ACTCCTCTGG-ATAAT-AAAGCTTT 236
consensus_8616#2      TTAGCAAGGTAAGTTAATTAGAG-AGGGCATGAC-ACTCCTCTGG-ATAAT-AAAGCTTT 225
consensus_8616#0      TTAGCAAGGTAAGTTAATTAGAG-AGTGCATGAC-ACTCCTCTGG-ATAAT-AAAGCTTT 220
consensus_8616#3      TTAGCAAGGTAAGTTAATTAGAGCAGTGCATGACCACTCCTCTGGCATAATCAAAGCTTT 110
                      *********************** ** ******* ********** ***** ********

consensus_8616#1      AAGCAAG-ATTTGTTACTAAAAC--CTTGTGTGCTTTTGCCCTGGCC-AAAGTGCTT-AG 291
consensus_8616#2      AAGCAAG-ATTTGTTACTAAAAC--CTTGGGGGCTTTTGCCCTGGCC-AAAGTGCTT-AG 280
consensus_8616#0      AAGCAAG-ATTTGTTACTAAAAC--CTTGTGTGCTTTTGCCCTGGCC-AAAGTGCTT-AG 275
consensus_8616#3      AAGCAAGCATTGGTTNCTCAAACACCTTGTGTGCTTTTGCCCTGGCCCAAAGTGCTTCAG 170
                      ******* *** *** ** ****  **** * *************** ********* **

consensus_8616#1      T-AGCATA--TTTCAAGTCACTATAT----AGGGATCT-GTACCAGCAG-TG-ATTCGGG 341
consensus_8616#2      T-AGCATA--TTTCAAGTCACTATAT----AGGGATCT-GTACCAGCAG-TG-ATTCGGG 330
consensus_8616#0      T-AGCATA--TTTCAAGTCACTATAT----AGGGATCT-GTACCAGCAG-TG-ATTCGGG 325
consensus_8616#3      TCAGCATCATTTCCAAGTCCACTCATCATCAGGGATCTTGTACCAGCAGGTGCATTCGGG 230
                      * *****   ** ******     **    ******** ********** ** *******

consensus_8616#1      C-ACACAC-----CAATG-AGC-CTG--AGTTGGGGTG-AATTAAGGAATCTGCCTGCC- 389
consensus_8616#2      C-ACACAC-----CAATG-GGC-CTG--AGTTGGGGTG-AATTAAGGAATTTGCCTGCC- 378
consensus_8616#0      C-ACACAC-----CAATG-AGC-CTG--AGTTGGGGTG-AATTAAGGAATCTGCCTGCC- 373
consensus_8616#3      CCACNCACACACCCAATGCAGCACTGCAGGTTGGGGTGCAATTCAAGTGCAATCCTGCCC 290
                      * ** ***     *****  ** ***   ********* **** * *      ****** 

consensus_8616#1      TGGCTCAAGTG----GATGATGAGTGAAGCAGTAGTGGGACACTCGACAGTAGCAGCAGC 445
consensus_8616#2      TGGCTCAGGTG----GATGATGAGGGAAGCATTAGTGGGACACTCGACAGTAGCAGCAGC 434
consensus_8616#0      TGGCTCAAGTG----GATGATGAGTGAAGCAGTAGTGGGACACTCGACAGTAGCAGCAGC 429
consensus_8616#3      TTGCCCTTGCGCTCCAATGTTGGCATTGATCGCAGCTGCACACGCC-CAGTCAGTGGTGC 349
                      * ** *  * *     *** **           **  * **** *  ****    *  **

consensus_8616#1      ACCATCCACAATCCATGTATAATTAGCAGGGGGATCACTGGCTGCAAGTGACTGGGCCAC 505
consensus_8616#2      CCCATCCACAATCAATGTATAATTAGCAGGGGGATTACTGGCTGCAAGTGACTGGGCCAC 494
consensus_8616#0      ACCATCCACAATCCATGTATAATTAGCAGGGGGATCACTGGCTGCAAGTGACTGGGCCAC 489
consensus_8616#3      ACCACCTCTGCACCATGCTCAGCCAGCCCAG--CCCACCNATCCCACCACATCCCAC-AT 406
                       *** *      * ***   *   ***   *     **      **    *     * * 

consensus_8616#1      CACTCATCACGTC-ATACTCA-TGCTACTACACAAGAGAGATCCAGTGAGACCACCAGTA 563
consensus_8616#2      CACTCATAACGTC-ATACTCA-TGCTAATACAAAAGAGAGATCCCGGGAGACCACCACGA 552
consensus_8616#0      CACTCATCACGTC-ATACTCA-TGCTAAATAAATGGAGAGAC-----GAGATTCACTCCA 542
consensus_8616#3      TGCTCATCACATTTACAGCCAGTGGTGTGCATCAACATTGGCTTGCCCAAGCTTGCACCT 466
                        ***** ** *  * *  ** ** *          *  *        *      *    

consensus_8616#1      TAAACGACGAGATGATCACAAAAATTAAGGACTGTT-CAGATGAT-TATCATG--ATGGA 619
consensus_8616#2      TAAACCAGGCGCTTCCCACGCGAATTCCGGACGGTTGCGGATGAT-TAATGTGG-ACGGG 610
consensus_8616#0      CATGATAACAGCTCCCCG-AAGGATCCCAAGCAGAAGCAGCAGCTGTATCGTGCTGTCTG 601
consensus_8616#3      TGG--------------------------------------------------------- 469
                                                                                  

consensus_8616#1      CGGAAAAAAGAAGAAGAGAGAAAAGAGGAGAAGAAGTGTGA---CAATAAATGG-AGAGA 675
consensus_8616#2      CCGAACACCCACAACCCATCGACCTCCCGCCCCATACCTGGGCCCTCTGAATGGGAAAAA 670
consensus_8616#0      TCATGCTTGGAGAACCGTTAATCACGATGCATCATCCCTCA---CTGACAGAGTGACAGA 658
consensus_8616#3      ------------------------------------------------------------
                                                                                  

consensus_8616#1      CGAGATTCACT-CCACATGATAACAGCTCCCCGAAG-GATCCCAAGCAGAAGCAGCAGCT 733
consensus_8616#2      CGAGATTTATTGCCACAGA----------------------------------------- 689
consensus_8616#0      CATGTCTTCTCCAAACAAACCTGCAGGCCCTCAAGTCAATTACTGGTAGTTGGTGTTACT 718
consensus_8616#3      ------------------------------------------------------------
                                                                                  

consensus_8616#1      GTATCGTGCTGTCTGTCATGCTTGGAGAACCGTTAATCACGATGCATCATC--------- 784
consensus_8616#2      ------------------------------------------------------------
consensus_8616#0      ACTAAGACGTACTTTGTGGATACACATGGCAATTGACACTTGTGCAGGGTAGCAAGGAGG 778
consensus_8616#3      ------------------------------------------------------------
                                                                                  

consensus_8616#1      ------------------------------------------------------------
consensus_8616#2      ------------------------------------------------------------
consensus_8616#0      ACATAACCACACTTCCAACTTCCAAGCTAGGATGGGAATAGTTCAATATGTGGCAGGATG 838
consensus_8616#3      ------------------------------------------------------------
                                                                                  

consensus_8616#1      ------------------------------------------------------------
consensus_8616#2      ------------------------------------------------------------
consensus_8616#0      ATACTTCAGACTTGTTGAGAAGCCATTGATCCATAATATGCCCCTGCTGATGGAATTGTA 898
consensus_8616#3      ------------------------------------------------------------
                                                                                  

consensus_8616#1      ------------------------------------------------------------
consensus_8616#2      ------------------------------------------------------------
consensus_8616#0      TGATTGCCCCAAGTTAAATTAGTGGCGTGGAGTGAAGGGAGAGTCAATGCTTCATCACAT 958
consensus_8616#3      ------------------------------------------------------------
                                                                                  

consensus_8616#1      ------------------------------------------------------------
consensus_8616#2      ------------------------------------------------------------
consensus_8616#0      AATAGATTGCTGTGGCTGCCACCTTAAGAGTGTGGCAAGTGTTGGCTTTGCTCATGGGCA 1018
consensus_8616#3      ------------------------------------------------------------
                                                                                  

consensus_8616#1      ------------------------------------------------------------
consensus_8616#2      ------------------------------------------------------------
consensus_8616#0      ACCACTCCTCACACACTGATTGGTGGGCAAACCTTATTCTGATGCCATGTGATAGAATCA 1078
consensus_8616#3      ------------------------------------------------------------
                                                                                  

consensus_8616#1      ---
consensus_8616#2      ---
consensus_8616#0      TCT 1081
consensus_8616#3      ---
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)