These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence [TACGCTACAGCTGGGATACTCCAAGGCACTGAGACAGTTGGAAATTGTAGACTGCAAGTTACTTGCTTCAGTCGAGGGCTTTGGATCCTTGACAGACCTTCTGTTATTGACAGTACACAACTCACCCAATTTACCTCAGTGTTTCAAGCTTCTTTCACAGCAGCGAGGGGCCTCTACGATCTTGTCCCGACTGAAGAGCATTCCTTGTAATCTTGCCACTGCAACTTTCCTGATGGACGGATCGTGACACAGCGTCACCGGCCGTCTCACCACCAGTTCCTACGACTTCGCACTGTTTGATCTGGGGCATACAAGACAAAAGTCATTGTTTTCATTCTTGTGCATCTCCTGGTTGGTGCCTCGTGTTTGACGTGCTGTCGATGGCCCGAACACTTTAACTCCCAACATTGTATGTCCTGATGTGGTTGTCTTTTTAAGGTCTTCCTAAATGCATTGCTCAGGACTTCAGGAGGGACGACTGTTCCTTCAAGAGGCCTGCTGAAAGCTCAGAATTTTGGTCCAAACGGCTGTGATACTCGTGCAAGCAAAGGGTCAATTGCCTCTGTTACATAATATGGAACACAAGTAGCATACATGGATTTTGCAGACAGNTAATGGTTCCTTGTCGAAAGCGNTTGAGTTGAATTGATCTGACCTCGGTGACTTCAACATTCGGTGATGACCTCTTTCCCCTATGCGATTNCAGGGAATTACAAAGGATTTTCTTGNGGATGACGGGGCTGNCAGTCCGGTATATTCTGGTATCTATTACTTCCTCTGANAAANANATTTGATGGTTANAACATTATTTGGNTNAAANTTTGNAAA] [+] EMBL CA764348 [TACGCTACAGCTGGGATACTCCAAGGCACTGAGACAGTTGGAAATTGTAGACTGCAAGTTACTTGCTTCAGTCGAGGGCTTTGGATCCTTGACAGACCTTCTGTTATTGACAGTACACAACTCACCCAATTTACCTCAGTGTTTCAAGCTTCTTTCACAGCAGCGAGGGGCCTCTACGATCTTGTCCCGACTGAAGAGCATTCCTTGTAATCTTGCCACTGCAACTTTCCTGATGGACGGATCGTGACACAGCGTCACCGGCCGTCTCACCACCAGTTCCTACGACTTCGCACTGTTTGATCTGGGGCATACAAGACAAAAGTCATTGTTTTCATTCTTGTGCATCTCCTGGTTGGTGCCTCGTGTTTGACGTGCTGTCGATGGCCCGAACACTTTAACTCCCAACATTGTATGTCCTGATGTGGTTGTCTTTTTAAGGTCTTCCTAAATGCATTGCTCAGGACTTCAGGAGGGACGACTGTTCCTTCAAGAGGCCTGCTGAAAGCTCAGAATTTTGGTCCAAACGGCTGTGATACTCGTGCAAGCAAAGGGTCAATTGCCTCTGTTACATAATATGGAACACAAGTAGCATACATGGATTTTGCAGACAGNTAATGGTTCCTTGTCGAAAGCGNTTGAGTTGAATTGATCTGACCTCGGTGACTTCAACATTCGGTGATGACCTCTTTCCCCTATGCGATTNCAGGGAATTACAAAGGATTTTCTTGNGGATGACGGGGCTGNCAGTCCGGTATATTCTGGTATCTATTACTTCCTCTGANAAANANATTTGATGGTTANAACATTATTTGGNTNAAANTTTGNAAA] consensusID : consensus_8623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [TGTCTACCGTGTGGGATCTCAAACTGCAGGAGCTTGAACAGGGCAGTAATCAGGTTCCACCGCCACCTCCGTCACTTGACACATTCCTTATCACGAATCTCACAGACAAGGTACAGTCTCGTCTGCTGTCCTTCCTCCCTACCATCACAAATTTAGTCATATCAGAAAGTCCAGAGTTGACATCTCTGCAGCTGGGATACTCCAAGGCACTGAAAGAGTTGGAAATTGTAGACTGCAAGTCACTTGCTTCAGTTGAGGGCTTTGGATCCTTGACAAACCTTAGGTTCTTGACAGTATATGAATCGCCCAGCATGCCTCAATGTTTTGAGATTCTATCACAACAACATGGGGCCTCTGAGATCTTGTCCCGACTGGAAAATCTTCAGATCAGTGATGGCTTTATCCTTACTGTTTCCCTCTGCAAACAGCTCACGTCTCTGAGAGATCTATTCTTCTGGCCTGAACGAAGCAAGCCTGATGCGACGATGATGGGTCTGACAGAGGAACAAGAGAGAGCACTCCAGCTTCTGACATCCCTCGAACGTCTCAACTTTTGGGGGTTGCCGAATCTCTTGTCCCTTCCTGCAAATCTAGCAAGCCTGACCTCCCTCGAGTGGTTAGATATCTCAGACTGCCCCCGCATGGCAAGGCTGCCAGAGATGGGCCTTCCACCATCGTTGAGGAGATTATCTTTATGCCGTTGCAGCGACGACCTAAG] [+] EMBL CB645299 [TGTCTACCGTGTGGGATCTCAAACTGCAGGAGCTTGAACAGGGCAGTAATCAGGTTCCACCGCCACCTCCGTCACTTGACACATTCCTTATCACGAATCTCACAGACAAGGTACAGTCTCGTCTGCTGTCCTTCCTCCCTACCATCACAAATTTAGTCATATCAGAAAGTCCAGAGTTGACATCTCTGCAGCTGGGATACTCCAAGGCACTGAAAGAGTTGGAAATTGTAGACTGCAAGTCACTTGCTTCAGTTGAGGGCTTTGGATCCTTGACAAACCTTAGGTTCTTGACAGTATATGAATCGCCCAGCATGCCTCAATGTTTTGAGATTCTATCACAACAACATGGGGCCTCTGAGATCTTGTCCCGACTGGAAAATCTTCAGATCAGTGATGGCTTTATCCTTACTGTTTCCCTCTGCAAACAGCTCACGTCTCTGAGAGATCTATTCTTCTGGCCTGAACGAAGCAAGCCTGATGCGACGATGATGGGTCTGACAGAGGAACAAGAGAGAGCACTCCAGCTTCTGACATCCCTCGAACGTCTCAACTTTTGGGGGTTGCCGAATCTCTTGTCCCTTCCTGCAAATCTAGCAAGCCTGACCTCCCTCGAGTGGTTAGATATCTCAGACTGCCCCCGCATGGCAAGGCTGCCAGAGATGGGCCTTCCACCATCGTTGAGGAGATTATCTTTATGCCGTTGCAGCGACGACCTAAG] consensusID : consensus_8623#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence [AGGGGGGACTTCAGGAGGGACGACTGTTCCTTCAAGAGGCCTGCTGAAAGCTCAGGTAACTTCCCTGTCATCCTCACATCGCTGTTTTTGCAATCTTAGTGACTGTCTACTTTTTGCAATCTTATGTTACTTCTGCTTGTATTCTTTACTAAAACCGAAGCTCACTTGAAGAATTTTGGTCCAAACGGCTGTGATACTCGTGCAAGCAAAGGGTCAATTGCCTCTGTTACATAATATGGAACACAGTACGCTTGTTAATGCCCTTTGCAGACAATCTCTTCATTTTGGATTCCTGCA-CT-AAGAAGTCGCTTGCTTCCTCCTGCAGAGTAGCATACATGGATTTTGCAGACAGTTA-ATGGTTCCTTGTCGAAAGCGT-TTGAGTTGAATTGATCTGACCTCGGTGAC-TTC-AACATTCGGTGATGACCTCTTCCCCCTATGCGATTCCAGGGAATTAC-AAAGGATTTCTTGTGGATGACGGGGCTGCCAGTCCGTTAT-AT-TCTGTTATCTATT-ACTTCCTCTGATAAAAGATATTTGATGTTTAGAACATTATTTGGTTAAAATTTT-GAAAATTCAAAAAAAAATGTTGTGACTGTGTTGGTGAATTTTGCATGCGGTATTTGGCGATTTTGCAACCTCTTGACTTATGCAAATCATTCTTATCCTATAACGCCTGGTGGTTTCCATGGCAAAAAA] [-] EMBL CA761780 [AGGGGGGACTTCAGGAGGGACGACTGTTCCTTCAAGAGGCCTGCTGAAAGCTCAGGTAACTTCCCTGTCATCCTCACATCGCTGTTTTTGCAATCTTAGTGACTGTCTACTTTTTGCAATCTTATGTTACTTCTGCTTGTATTCTTTACTAAAACCGAAGCTCACTTGAAGAATTTTGGTCCAAACGGCTGTGATACTCGTGCAAGCAAAGGGTCAATTGCCTCTGTTACATAATATGGAACACAGTACGCTTGTTAATGCCCTTTGCAGACAATCTCTTCATTTTGGATTCCTGCA CT AAGAAGTCGCTTGCTTCCTCCTGCAGAGTAGCATACATGGATTTTGCAGACAGTTA ATGGTTCCTTGTCGAAAGCGT TTGAGTTGAATTGATCTGACCTCGGTGAC TTC AACATTCGGTGATGACCTCTTCCCCCTATGCGATTCCAGGGAATTAC AAAGGATTTCTTGTGGATGACGGGGCTGCCAGTCCGTTAT AT TCTGTTATCTATT ACTTCCTCTGATAAAAGATATTTGATGTTTAGAACATTATTTGGTTAAAATTTT GAAAATTCAAAAAAAAA ] [+] EMBL BM421133 [ gtccgcgTGCAGCTGAAGAAGTCGCTTGCTTCCTCCTGCATAGTAGCATACATGGATTTNGCAGACAGTTAGATGGTTCCTTGTCGAAAGCGTNTTGAGTTGAATTGATCTGACCTCGGTGACGTTCGAACATTCGGTGATGACCTCTTCCCCCTATGCGATTCCAGTGAATTACNNAAGGATTTCTTGTGGATGACGGGGCTGCCAGTCCGTTATGATGTCTGTTATCTATTGACTCCCTCTGATAAAAGATATTTGATGTTTAGAACATTATTTGGTTAAAATTTTGGAAAATTCATTCCATCTTGTTGTGACTGTGTTGGTGAATTTTGCATGCGGTATTTGGCGATTTTGCAACCTCTTGACTTATGCAAATCATTCTTATCCTATAACGCCTGGTGGTTTCCATGGCAAAAAA] consensusID : consensus_8623#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [ATGACAAGCGGCCTTGTCCTCCCATCTGTCAGATTTCTCTCCCTTCAGTCATGTGCCATATCAGGGAGTTGGCTAACGGAAATGCTTTCGCATGTGCGGTCTCTCAAGACTTTGAAATTACATGACTGCCCACAAATAAAATTTCTATCCTTCAGTGAACCTGCAGCAATGGAAGGTGCCAGCAGTTTGGGTTCAGCAGCAACGCACTCTGATAGGGATGAACAGCTGTTGAAAATTCCATCTAATATCATCCATTCTCTAAGAGATCTATTTATTTCTAACTGCCCTGATCTAGAGTTCGGAGGAGAAGAGGGAGCCCTCCGAGGATACACCTCTCTTGAATCCATTAAAGTTCAGAGTTGCCCCAAACTGATACCATTGTTGGTGAGTGGTAAGATGGAGGGTTGGATCGCTGCCACCATCTCTACGAAGCTTAGATATTGATATGGATCCTGAGCTGTCTACTGTATGGGATCTCAAACTGCAGGAGCTTGAACAGGGTGTTAATCAGGTTCCACCGCCACCTCCATCACTTGATACACTCTGTATCACGAATCTCACAGTTACAGTCCCGT] [+] EMBL CF305747 [ATGACAAGCGGCCTTGTCCTCCCATCTGTCAGATTTCTCTCCCTTCAGTCATGTGCCATATCAGGGAGTTGGCTAACGGAAATGCTTTCGCATGTGCGGTCTCTCAAGACTTTGAAATTACATGACTGCCCACAAATAAAATTTCTATCCTTCAGTGAACCTGCAGCAATGGAAGGTGCCAGCAGTTTGGGTTCAGCAGCAACGCACTCTGATAGGGATGAACAGCTGTTGAAAATTCCATCTAATATCATCCATTCTCTAAGAGATCTATTTATTTCTAACTGCCCTGATCTAGAGTTCGGAGGAGAAGAGGGAGCCCTCCGAGGATACACCTCTCTTGAATCCATTAAAGTTCAGAGTTGCCCCAAACTGATACCATTGTTGGTGAGTGGTAAGATGGAGGGTTGGATCGCTGCCACCATCTCTACGAAGCTTAGATATTGATATGGATCCTGAGCTGTCTACTGTATGGGATCTCAAACTGCAGGAGCTTGAACAGGGTGTTAATCAGGTTCCACCGCCACCTCCATCACTTGATACACTCTGTATCACGAATCTCACAGTTACAGTCCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8623#0 TACGCTACAGCTGGGATACTCCAAGGCACTGAGACAGTTGGAAATTGTAGACTGCAAGTT 60 consensus_8623#2 ------------------------------------------------------------ consensus_8623#1 ------------------------------------------------------------ consensus_8623#3 ------------------------------------------------------------ consensus_8623#0 ACTTGCTTCAGTCGAGGGCTTTGGATCCTTGACAG--ACCTTCTGTTATTGACAGTACAC 118 consensus_8623#2 ------------------------------------------------------------ consensus_8623#1 ---------TGTCTACCGTGTGGGATCTCAAACTGCAGGAGCTTGAACAGGGCAGTAATC 51 consensus_8623#3 ------------------------------------------------------------ consensus_8623#0 AACTCACCCAATTTACCTCAGTGTTTCAAGCTTCTTTCACAGCAGCGAGGGGCCTCTACG 178 consensus_8623#2 ------------------------------------------------------------ consensus_8623#1 AGGTTCCACCGCCACCTCCGTCACTTGACACATTCCTTATCAC------GAATCTCACAG 105 consensus_8623#3 ------------------------------------------------------------ consensus_8623#0 ATCTTGTCCCGACTGAAGAGCATTCCTTGTAATCTTGCCACTGCAACTTTCCTGATGGAC 238 consensus_8623#2 ---------------------------------------AGGGGGGACTTCAGGAGGGAC 21 consensus_8623#1 ACAAGGTACAGTCTCGTCTGCTGTCCTTCCT-CCCTACCATCACAAATTTAGTCATATCA 164 consensus_8623#3 ------------ATGACAAGCGGCCTTGTCCTCCCATCTGTCAGATTTCTCTCCCTTCAG 48 * consensus_8623#0 G---GATCGTGAC--ACAGCGTCACCGGCCGTCTCACCACCAGTTCCTACGACTTCGCAC 293 consensus_8623#2 GACTGTTCCTTCA--AGAGGCCTGCTGAAAGCTCAGGTAACTTCCCTGTCATCCTCACAT 79 consensus_8623#1 GAAAGTCCAGAGTTGACATCTCTGCAGCTGGGATACTCCAAGGCACTGAAAGAGTTGGAA 224 consensus_8623#3 TCATGTGCCATATCAGGGAGTTGGCTAACGGAA-ATGCTTTCGCATGTGCGGTCTCTCAA 107 * * * * * * consensus_8623#0 TGTTTGATCTGGGGCATACAAGACAAAAGTCATTGTTTTCATTCTTGTGCATCTCCTGGT 353 consensus_8623#2 CGCT--GTTTTTGCAATCTTAGTGACTGTCTACTTTTTGCAATCTTATGTTACTTCTGCT 137 consensus_8623#1 ATTGTAGACTGCAAGTCACTTGCTTCAGTTGAGGGCTTTGGATCCTTGACAAACCTTAGG 284 consensus_8623#3 GACTTTGAAATTACATGACTGCCCACAAATAAA-ATTTCTATCCTTCAGTGAACCTGCAG 166 * ** * * consensus_8623#0 TGGTGCCTCGTGTTTGACGTGCTGTCGATGGCCCGAACACTTTAACTCCCAACATTGTAT 413 consensus_8623#2 TG-TATTCTTTACTAAA---ACCGAAGCTCACTTGAAGAATTTTGGTCCAAACG------ 187 consensus_8623#1 TTCTTGACAGTATATGAATCGCCCAGCATGCCTCAATGTTTTGAGATTCTATCA------ 338 consensus_8623#3 CAATGGAAGGTGCCAG------CAGTTTGGGTTCAGCAGCAACGCACTCTGATA------ 214 * * * consensus_8623#0 GTCCTGATGTGGTTGTCTTTTTAAGGTCTTCCTAAATGCATTGCTCAGGACTTCAGGAGG 473 consensus_8623#2 GCTGTGATACTCGTGCAAGCAAAGGGTC-----AATTGCCTCTGTTACATAATATGGAAC 242 consensus_8623#1 -CAACAACATGGG-GCCTCTGAGATCTTGTCCCGACTGGAAAATCTTCAGATCAGTGATG 396 consensus_8623#3 -----GGGATGAACAGCTGTTGAAAATT---CCATCT--AATATCATCCATTCTCTAAGA 264 * * * consensus_8623#0 GACGACTGTTCCTTCAAGAGGCCTGCTGA-AAGCTCAGAATTTTGGTCCAAACGGCTGTG 532 consensus_8623#2 ACAGTACGCTTGTTAATGCCCTTTGCAGACAATCTCTTCATTTTGG-------------- 288 consensus_8623#1 GCTTTATCCTTACTGTTTCCCTCTGCAAA-CAGCTCACGTCTCTGAGAGATCTATTCTTC 455 consensus_8623#3 GATCTATTTATTTCTAACTGCCCTGATCTAGAGTTCGGAGGAGAAGAGGGAGC------- 317 ** * ** consensus_8623#0 ATACTCGTGCAAGCAAAGGGTCAATTGCCTCTGTTACATAATATGGAACACAAGTAGCAT 592 consensus_8623#2 --ATTCCTGCAC-TAAGAAGTCGCTTGCTTCC-TCCTGCAG-----------AGTAGCAT 333 consensus_8623#1 TGGCCTGAACGA--AGCAAGCCTGATGCGACGATGATG-GGTCTGACAGAGGAACAAGAG 512 consensus_8623#3 --CCTCCGAGGA--TACACCTCTCTTGAATCCATTA----------------AAGTTCAG 357 * ** * * * * consensus_8623#0 ACATGGATTTTGCAGACAGNTAATGGTTCCTTGTCGAAAGCGNTTGAGTTGAATTGATCT 652 consensus_8623#2 ACATGGATTTTGCAGACAGTTAATGGTTCCTTGTCGAAAGCGTTTGAGTTGAATTGATCT 393 consensus_8623#1 AGA-GCACTCCAGCTTCTGACATCCCTCGAACGTCTCAACTTTTGGGGGTTGCCGAATCT 571 consensus_8623#3 AGTTGC-CCCAAACTGATACCATTGTTGGTGAGTGGTAAGATGGAGGGTTGGATCGCTGC 416 * * * * ** ** * * * * consensus_8623#0 GACCTCGGTGACTTCAACATTCGGTGATGACCTCTTTCCCCTATGCGATTNCAG---GGA 709 consensus_8623#2 GACCTCGGTGACTTCAACATTCGGTGATGACCTCTTCCCCCTATGCGATTCCAG---GGA 450 consensus_8623#1 CTTGTCCCTTCCTGCAA-ATCTAGCAA-GCCTGACCTCCCTCGAGTGGTTA------GAT 623 consensus_8623#3 CA---CCATCTCTACGAAGCTTAGATATTGATATGGATCCTGAGCTGTCTACTGTATGGG 473 * * ** * * * * ** * * * consensus_8623#0 ATTACAAAGGATTTTCTTGNGGATGACGGGGCTGNCAGTCCGGTATATTCTGGTATCTAT 769 consensus_8623#2 ATTACAAAGGATTT-CTTGTGGATGACGGGGCTGCCAGTCCGTTATATTCTGTTATCTAT 509 consensus_8623#1 ATCTCAGA----CTGCCCCCGCATGGCAAGGCTGCCAG------AGAT----GGGCCTTC 669 consensus_8623#3 ATCTCAAA----CTGCAGGAGCTTGAACAGGGTGTTAATC----AGGTTCCACCGCCACC 525 ** ** * * * * ** ** ** * * * * consensus_8623#0 TACTTCCTCTGANAAAN-ANATTTGATGGTTANAACATTATTTGGNTNAAANTTTGNAAA 828 consensus_8623#2 TACTTCCTCTGATAAAAGATATTTGATGTTTAGAACATTATTTGGTTAAAATTTTGAAAA 569 consensus_8623#1 CACCATCGTTGAGGAGATTATCTTTATG-CCGTTGCAGCGACGACCTAAG---------- 718 consensus_8623#3 TCCATCACTTGATACACTCTGTATCACGAATCTCACAGTTACAGTCCCGT---------- 575 * *** * * * ** consensus_8623#0 ------------------------------------------------------------ consensus_8623#2 TTCAAAAAAAAATGTTGTGACTGTGTTGGTGAATTTTGCATGCGGTATTTGGCGATTTTG 629 consensus_8623#1 ------------------------------------------------------------ consensus_8623#3 ------------------------------------------------------------ consensus_8623#0 ------------------------------------------------------------ consensus_8623#2 CAACCTCTTGACTTATGCAAATCATTCTTATCCTATAACGCCTGGTGGTTTCCATGGCAA 689 consensus_8623#1 ------------------------------------------------------------ consensus_8623#3 ------------------------------------------------------------ consensus_8623#0 ---- consensus_8623#2 AAAA 693 consensus_8623#1 ---- consensus_8623#3 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||