| These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs : 
 consensusID : consensus_8627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1020 fasta sequence 
                              [TTAGTAGGAGTCGTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACT-AAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCANATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAGTCTGATGCCACGAAAGAATCTATATCCTTCTTCAAAGGGTTAATCTTCAAAATTGGAAATGGTTTAGGTAGCTTCTGGATTTGCTCCTCCAGAGCTCGCACATGTGTTCTATAGACATGGGCATCACCAATAACATGGACAAACTCTCCAGGAGAAAGACCGCAAACATGAGCAATCATGTATGTCAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGTCCCATATCAGCAGAGCGTTGATACATCTGGCACGATAGCTCCCCGCTCTCAACATAAAATTGTGCAAACATGTGGCAAGGAGGAAGGGCCATCTTCTTGAGATCTGAAGGATTCCACGCAGATAGGATAATTCGCCTATCGTCAGGATTATTCTTGATCTTGTCAATCACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGTATATTCAGCACCAAAGTGTCGCCATTGAAATCCATAAACTGGACCTAGATCACCTTCTTCCCTATGTGCTAAGCCAACACTGTCAAGATACTCTCTCGAAGCATTGCCATCCCAAATATGAA]
[+] EMBL CA759693             [TTAGTAGGAGTCGTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACT AAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCANATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAGTCTGATGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB631384             [                                                                                                                                                                                                                                      AGATAAACGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCAAATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAGTCTGATGCCACGAAAGAATCTATATCCTTCTTCAAAGGGTTAATCTTCAAAATTGGAAATGGTTTAGGTAGCTTCTGGATTTGCTCCTCCAGAGCTCGCACATGTGTTCTATAGACATGGGCATCACCAATAACATGGACAAACTCTCCAGGAGAAAGACCGCAAACATGAGCAATCATGTATGTCAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGTCCCATATCAGCAGAGCGTTGATACATCTGGCACGATAGCTCCCCGCTCTCAACATAAAATTGTGCAAACATGTGGCAAGGAGGAAGGGCCATCTTCTTGAGATCTGAAGGATTCCACGCAGATAGGATAATTCGCCTATCGTCAGGATTATTCTTGATCTTGTCAATCACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGTATATTCAGCACCAAAGTGTCGCCATTGAAATCCATAAACTGGACCTAGATCACCTTCTTCCCTATGTGCTAAGCCAACACTGTCAAGATACTCTCTCGAAGCATTGCCATCCCAAATATGAA]
consensusID : consensus_8627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence 
                              [TTTTTTTTTTTTTTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAACAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCAAATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACAGTTGAAGTCTGATGCCAGAAAGAATCTATATCCTTCTTCAAAGGGTTCAATCTTCACCAATTGGACACGTGGTTCTAGGTAAGCTTCTGGATTGCTCCTCCGAAGGNCGGCGT]
[-] EMBL BM038723             [TTTTTTTTTTTTTTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAACAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCAAATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACAGTTGAAGTCTGATGCCAGAAAGAATCTATATCCTTCTTCAAAGGGTTCAATCTTCACCAATTGGACACGTGGTTCTAGGTAAGCTTCTGGATTGCTCCTCCGAAGGNCGGCGT]
consensusID : consensus_8627#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence 
                              [CGTCAGGGATATTCTTGGATCTTGTCAATCAACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGNATATTTCAGGCACCAAAAGTGTCGCCATGGAANTCCATAAACTGGACCTAGGATCACCTCTTCCNATGTGCTAAGCCAACACTGTCAGGTACTCTCTCGAAGCATTGCCATCCCAAATATGAATGCCTTTCTCTTGTAAAACCTTTGCACTTGTCGAGCCACTGATGAACCACAGGAGTTCTTCAACAACACCCCTCCAAAATACCTTCTTTGTTGTCAACAATGGGAAGCTATTCCTTAAGTTGAACCGCATCTGACAACCAAATTTCGATAATGTCCCTGTTCCTGTTCTGTCATTTTTCTGAGCACCACTCCTTATAATATCTTCAACAAGATTGA]
[-] EMBL AU031025             [CGTCAGGGATATTCTTGGATCTTGTCAATCAACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGNATATTTCAGGCACCAAAAGTGTCGCCATGGAANTCCATAAACTGGACCTAGGATCACCTCTTCCNATGTGCTAAGCCAACACTGTCAGGTACTCTCTCGAAGCATTGCCATCCCAAATATGAATGCCTTTCTCTTGTAAAACCTTTGCACTTGTCGAGCCACTGATGAACCACAGGAGTTCTTCAACAACACCCCTCCAAAATACCTTCTTTGTTGTCAACAATGGGAAGCTATTCCTTAAGTTGAACCGCATCTGACAACCAAATTTCGATAATGTCCCTGTTCCTGTTCTGTCATTTTTCTGAGCACCACTCCTTATAATATCTTCAACAAGATTGA]
consensusID : consensus_8627#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence 
                              [TTTTTTTTTTTTTTTTTTTCANCACCAAAATNACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGCTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCAACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTAGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTACTTAAGTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACC]
[-] EMBL AU095198             [TTTTTTTTTTTTTTTTTTTCANCACCAAAATNACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGCTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCAACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTAGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTACTTAAGTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8627#1      -----------TTTTTTTTTTTTTTCCAGCAACACCAG--AGGCACTCCGAAGCTTCACC 47
consensus_8627#3      -----------TTTTTTTTTTTTTTTT------------------TTTCAN-----CACC 26
consensus_8627#0      -----------TTAGTAGGAGTCGTCCAGCAACACCAG--AGGCACTCCGAAGCTTCACC 47
consensus_8627#2      CGTCAGGGATATTCTTGGATCTTGTCAATCAACATCCATTAGCTGATCAAAGCCTTTACC 60
                                 **  *     *  *                     *          ***
consensus_8627#1      AAAATGACCAAAATGTGTGTCGCAGT----CAGGGTACATGACATCCATCGCCGAGGTAC 103
consensus_8627#3      AAAATNACCAAAATGTGTGTCGCAGT----CAGGGTACATGACATCCATCGCCGAGCTAC 82
consensus_8627#0      AAAATGACCAAAATGTGTGTCGCAGT----CAGGGTACATGACATCCATCGCCGAGGTAC 103
consensus_8627#2      AGTATAGTCAGCATGCATGTCGGNATATTTCAGGCACCAAAAGTGTCGCCATGGAANTCC 120
                      *  **   **  ***  *****   *    ****   **  *    *  *   **  * *
consensus_8627#1      ACATAACG---CCCGGTTGGC-TCTTCCAACATGGT--GTCTACTCGAAACAAGCTCTAA 157
consensus_8627#3      ACATAACG---CCCGGTTGGCCTCTTCCAACATGGT--GTCAACTCGAAACAAGCTCTAA 137
consensus_8627#0      ACATAACG---CCCGGTTGGCCTCTTCCAACATGGT--GTCTACTCGAAACAAGCTCTAA 158
consensus_8627#2      ATAAACTGGACCTAGGATCACCTCTTCCNATGTGCTAAGCCAACACTGT-CAGGTACTCT 179
                      * * *  *   *  ** *  * ****** *  ** *  * * ** *    ** *  **  
consensus_8627#1      CATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTG 217
consensus_8627#3      CATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTA 197
consensus_8627#0      CATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTG 218
consensus_8627#2      CTCGAAGCATTGCCATCC--CAAATATGAATGCCTTTCTCTTGTAAAACCTTTGCACTT- 236
                      *   *  ** **    *    ***   *   ***  *  *  **     * * *   ** 
consensus_8627#1      GATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAA 277
consensus_8627#3      GATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAA 257
consensus_8627#0      GATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAA 278
consensus_8627#2      GTCGAGCCACTGATG---AACCACAG----GAGTTCTTCAACAACACCCCTCCAAAATAC 289
                      *    ** ** **     **  ***     *  *   *  * ****    ******  * 
consensus_8627#1      CATCC--AGCACCACCACTAAAAAAAACAAA-GTAAGCTAGTGCGATGTTCGCA-TAAGG 333
consensus_8627#3      CATCC--AGCACCACCACTAAAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCA-TAAGG 314
consensus_8627#0      CATCC--AGCACCACCACTAAAAAAAAAA---GTAAGCTAGTGCGATGTTCGCA-TAAGG 332
consensus_8627#2      CTTCTTTGTTGTCAACAATGGGAAGCTATTCCTTAAGTTGAACCGCATCTGACAACCAAA 349
                      * **        ** ** *   **         **** *    **    *  **   *  
consensus_8627#1      TTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCA 393
consensus_8627#3      TTTTCCTACTTAAGTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACC- 373
consensus_8627#0      TTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCA 392
consensus_8627#2      TTTCGATAATGTCCCTGTTCCTGTTCTGTCATTTTTCTGAGCACCACTCCTTATAATATC 409
                      ***   *  *     *  ***            *  *** *   * *  ****       
consensus_8627#1      AATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACAG--TTGAAG 451
consensus_8627#3      ------------------------------------------------------------
consensus_8627#0      NATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAG 452
consensus_8627#2      TTCAACAAGATTGA---------------------------------------------- 423
                                                                                  
consensus_8627#1      TCTGATGCCA-GAAAGAATCTATATCCTTCTTCAAAGGGTTCAATCTTCACCAATTGGAC 510
consensus_8627#3      ------------------------------------------------------------
consensus_8627#0      TCTGATGCCACGAAAGAATCTATATCCTTCTTCAAAGGGTT-AATCTTCAA-AATTGGAA 510
consensus_8627#2      ------------------------------------------------------------
                                                                                  
consensus_8627#1      ACGTGGTTCTAGGTAAGCTTCTGGATTGCTCCTCCGAAGGNCGGCGT------------- 557
consensus_8627#3      ------------------------------------------------------------
consensus_8627#0      ATGG---TTTAGGTAGCTTCTGGATTTGCTCCTCCAGAGCTCGCACATGTGTTCTATAGA 567
consensus_8627#2      ------------------------------------------------------------
                                                                                  
consensus_8627#1      ------------------------------------------------------------
consensus_8627#3      ------------------------------------------------------------
consensus_8627#0      CATGGGCATCACCAATAACATGGACAAACTCTCCAGGAGAAAGACCGCAAACATGAGCAA 627
consensus_8627#2      ------------------------------------------------------------
                                                                                  
consensus_8627#1      ------------------------------------------------------------
consensus_8627#3      ------------------------------------------------------------
consensus_8627#0      TCATGTATGTCAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGTCCCATATCAG 687
consensus_8627#2      ------------------------------------------------------------
                                                                                  
consensus_8627#1      ------------------------------------------------------------
consensus_8627#3      ------------------------------------------------------------
consensus_8627#0      CAGAGCGTTGATACATCTGGCACGATAGCTCCCCGCTCTCAACATAAAATTGTGCAAACA 747
consensus_8627#2      ------------------------------------------------------------
                                                                                  
consensus_8627#1      ------------------------------------------------------------
consensus_8627#3      ------------------------------------------------------------
consensus_8627#0      TGTGGCAAGGAGGAAGGGCCATCTTCTTGAGATCTGAAGGATTCCACGCAGATAGGATAA 807
consensus_8627#2      ------------------------------------------------------------
                                                                                  
consensus_8627#1      ------------------------------------------------------------
consensus_8627#3      ------------------------------------------------------------
consensus_8627#0      TTCGCCTATCGTCAGGATTATTCTTGATCTTGTCAATCACATCCATTAGCTGATCAAAGC 867
consensus_8627#2      ------------------------------------------------------------
                                                                                  
consensus_8627#1      ------------------------------------------------------------
consensus_8627#3      ------------------------------------------------------------
consensus_8627#0      CTTTACCAGTATAGTCAGCATGCATGTCGGTATATTCAGCACCAAAGTGTCGCCATTGAA 927
consensus_8627#2      ------------------------------------------------------------
                                                                                  
consensus_8627#1      ------------------------------------------------------------
consensus_8627#3      ------------------------------------------------------------
consensus_8627#0      ATCCATAAACTGGACCTAGATCACCTTCTTCCCTATGTGCTAAGCCAACACTGTCAAGAT 987
consensus_8627#2      ------------------------------------------------------------
                                                                                  
consensus_8627#1      ---------------------------------
consensus_8627#3      ---------------------------------
consensus_8627#0      ACTCTCTCGAAGCATTGCCATCCCAAATATGAA 1020
consensus_8627#2      ---------------------------------
                                                       
 | 
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||