These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1020 fasta sequence [TTAGTAGGAGTCGTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACT-AAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCANATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAGTCTGATGCCACGAAAGAATCTATATCCTTCTTCAAAGGGTTAATCTTCAAAATTGGAAATGGTTTAGGTAGCTTCTGGATTTGCTCCTCCAGAGCTCGCACATGTGTTCTATAGACATGGGCATCACCAATAACATGGACAAACTCTCCAGGAGAAAGACCGCAAACATGAGCAATCATGTATGTCAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGTCCCATATCAGCAGAGCGTTGATACATCTGGCACGATAGCTCCCCGCTCTCAACATAAAATTGTGCAAACATGTGGCAAGGAGGAAGGGCCATCTTCTTGAGATCTGAAGGATTCCACGCAGATAGGATAATTCGCCTATCGTCAGGATTATTCTTGATCTTGTCAATCACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGTATATTCAGCACCAAAGTGTCGCCATTGAAATCCATAAACTGGACCTAGATCACCTTCTTCCCTATGTGCTAAGCCAACACTGTCAAGATACTCTCTCGAAGCATTGCCATCCCAAATATGAA] [+] EMBL CA759693 [TTAGTAGGAGTCGTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACT AAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCANATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAGTCTGATGCC ] [+] EMBL CB631384 [ AGATAAACGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCAAATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAGTCTGATGCCACGAAAGAATCTATATCCTTCTTCAAAGGGTTAATCTTCAAAATTGGAAATGGTTTAGGTAGCTTCTGGATTTGCTCCTCCAGAGCTCGCACATGTGTTCTATAGACATGGGCATCACCAATAACATGGACAAACTCTCCAGGAGAAAGACCGCAAACATGAGCAATCATGTATGTCAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGTCCCATATCAGCAGAGCGTTGATACATCTGGCACGATAGCTCCCCGCTCTCAACATAAAATTGTGCAAACATGTGGCAAGGAGGAAGGGCCATCTTCTTGAGATCTGAAGGATTCCACGCAGATAGGATAATTCGCCTATCGTCAGGATTATTCTTGATCTTGTCAATCACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGTATATTCAGCACCAAAGTGTCGCCATTGAAATCCATAAACTGGACCTAGATCACCTTCTTCCCTATGTGCTAAGCCAACACTGTCAAGATACTCTCTCGAAGCATTGCCATCCCAAATATGAA] consensusID : consensus_8627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [TTTTTTTTTTTTTTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAACAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCAAATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACAGTTGAAGTCTGATGCCAGAAAGAATCTATATCCTTCTTCAAAGGGTTCAATCTTCACCAATTGGACACGTGGTTCTAGGTAAGCTTCTGGATTGCTCCTCCGAAGGNCGGCGT] [-] EMBL BM038723 [TTTTTTTTTTTTTTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAACAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCAAATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACAGTTGAAGTCTGATGCCAGAAAGAATCTATATCCTTCTTCAAAGGGTTCAATCTTCACCAATTGGACACGTGGTTCTAGGTAAGCTTCTGGATTGCTCCTCCGAAGGNCGGCGT] consensusID : consensus_8627#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [CGTCAGGGATATTCTTGGATCTTGTCAATCAACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGNATATTTCAGGCACCAAAAGTGTCGCCATGGAANTCCATAAACTGGACCTAGGATCACCTCTTCCNATGTGCTAAGCCAACACTGTCAGGTACTCTCTCGAAGCATTGCCATCCCAAATATGAATGCCTTTCTCTTGTAAAACCTTTGCACTTGTCGAGCCACTGATGAACCACAGGAGTTCTTCAACAACACCCCTCCAAAATACCTTCTTTGTTGTCAACAATGGGAAGCTATTCCTTAAGTTGAACCGCATCTGACAACCAAATTTCGATAATGTCCCTGTTCCTGTTCTGTCATTTTTCTGAGCACCACTCCTTATAATATCTTCAACAAGATTGA] [-] EMBL AU031025 [CGTCAGGGATATTCTTGGATCTTGTCAATCAACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGNATATTTCAGGCACCAAAAGTGTCGCCATGGAANTCCATAAACTGGACCTAGGATCACCTCTTCCNATGTGCTAAGCCAACACTGTCAGGTACTCTCTCGAAGCATTGCCATCCCAAATATGAATGCCTTTCTCTTGTAAAACCTTTGCACTTGTCGAGCCACTGATGAACCACAGGAGTTCTTCAACAACACCCCTCCAAAATACCTTCTTTGTTGTCAACAATGGGAAGCTATTCCTTAAGTTGAACCGCATCTGACAACCAAATTTCGATAATGTCCCTGTTCCTGTTCTGTCATTTTTCTGAGCACCACTCCTTATAATATCTTCAACAAGATTGA] consensusID : consensus_8627#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [TTTTTTTTTTTTTTTTTTTCANCACCAAAATNACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGCTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCAACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTAGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTACTTAAGTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACC] [-] EMBL AU095198 [TTTTTTTTTTTTTTTTTTTCANCACCAAAATNACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGCTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCAACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTAGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTACTTAAGTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8627#1 -----------TTTTTTTTTTTTTTCCAGCAACACCAG--AGGCACTCCGAAGCTTCACC 47 consensus_8627#3 -----------TTTTTTTTTTTTTTTT------------------TTTCAN-----CACC 26 consensus_8627#0 -----------TTAGTAGGAGTCGTCCAGCAACACCAG--AGGCACTCCGAAGCTTCACC 47 consensus_8627#2 CGTCAGGGATATTCTTGGATCTTGTCAATCAACATCCATTAGCTGATCAAAGCCTTTACC 60 ** * * * * *** consensus_8627#1 AAAATGACCAAAATGTGTGTCGCAGT----CAGGGTACATGACATCCATCGCCGAGGTAC 103 consensus_8627#3 AAAATNACCAAAATGTGTGTCGCAGT----CAGGGTACATGACATCCATCGCCGAGCTAC 82 consensus_8627#0 AAAATGACCAAAATGTGTGTCGCAGT----CAGGGTACATGACATCCATCGCCGAGGTAC 103 consensus_8627#2 AGTATAGTCAGCATGCATGTCGGNATATTTCAGGCACCAAAAGTGTCGCCATGGAANTCC 120 * ** ** *** ***** * **** ** * * * ** * * consensus_8627#1 ACATAACG---CCCGGTTGGC-TCTTCCAACATGGT--GTCTACTCGAAACAAGCTCTAA 157 consensus_8627#3 ACATAACG---CCCGGTTGGCCTCTTCCAACATGGT--GTCAACTCGAAACAAGCTCTAA 137 consensus_8627#0 ACATAACG---CCCGGTTGGCCTCTTCCAACATGGT--GTCTACTCGAAACAAGCTCTAA 158 consensus_8627#2 ATAAACTGGACCTAGGATCACCTCTTCCNATGTGCTAAGCCAACACTGT-CAGGTACTCT 179 * * * * * ** * * ****** * ** * * * ** * ** * ** consensus_8627#1 CATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTG 217 consensus_8627#3 CATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTA 197 consensus_8627#0 CATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTG 218 consensus_8627#2 CTCGAAGCATTGCCATCC--CAAATATGAATGCCTTTCTCTTGTAAAACCTTTGCACTT- 236 * * ** ** * *** * *** * * ** * * * ** consensus_8627#1 GATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAA 277 consensus_8627#3 GATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAA 257 consensus_8627#0 GATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAA 278 consensus_8627#2 GTCGAGCCACTGATG---AACCACAG----GAGTTCTTCAACAACACCCCTCCAAAATAC 289 * ** ** ** ** *** * * * * **** ****** * consensus_8627#1 CATCC--AGCACCACCACTAAAAAAAACAAA-GTAAGCTAGTGCGATGTTCGCA-TAAGG 333 consensus_8627#3 CATCC--AGCACCACCACTAAAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCA-TAAGG 314 consensus_8627#0 CATCC--AGCACCACCACTAAAAAAAAAA---GTAAGCTAGTGCGATGTTCGCA-TAAGG 332 consensus_8627#2 CTTCTTTGTTGTCAACAATGGGAAGCTATTCCTTAAGTTGAACCGCATCTGACAACCAAA 349 * ** ** ** * ** **** * ** * ** * consensus_8627#1 TTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCA 393 consensus_8627#3 TTTTCCTACTTAAGTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACC- 373 consensus_8627#0 TTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCA 392 consensus_8627#2 TTTCGATAATGTCCCTGTTCCTGTTCTGTCATTTTTCTGAGCACCACTCCTTATAATATC 409 *** * * * *** * *** * * * **** consensus_8627#1 AATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACAG--TTGAAG 451 consensus_8627#3 ------------------------------------------------------------ consensus_8627#0 NATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAG 452 consensus_8627#2 TTCAACAAGATTGA---------------------------------------------- 423 consensus_8627#1 TCTGATGCCA-GAAAGAATCTATATCCTTCTTCAAAGGGTTCAATCTTCACCAATTGGAC 510 consensus_8627#3 ------------------------------------------------------------ consensus_8627#0 TCTGATGCCACGAAAGAATCTATATCCTTCTTCAAAGGGTT-AATCTTCAA-AATTGGAA 510 consensus_8627#2 ------------------------------------------------------------ consensus_8627#1 ACGTGGTTCTAGGTAAGCTTCTGGATTGCTCCTCCGAAGGNCGGCGT------------- 557 consensus_8627#3 ------------------------------------------------------------ consensus_8627#0 ATGG---TTTAGGTAGCTTCTGGATTTGCTCCTCCAGAGCTCGCACATGTGTTCTATAGA 567 consensus_8627#2 ------------------------------------------------------------ consensus_8627#1 ------------------------------------------------------------ consensus_8627#3 ------------------------------------------------------------ consensus_8627#0 CATGGGCATCACCAATAACATGGACAAACTCTCCAGGAGAAAGACCGCAAACATGAGCAA 627 consensus_8627#2 ------------------------------------------------------------ consensus_8627#1 ------------------------------------------------------------ consensus_8627#3 ------------------------------------------------------------ consensus_8627#0 TCATGTATGTCAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGTCCCATATCAG 687 consensus_8627#2 ------------------------------------------------------------ consensus_8627#1 ------------------------------------------------------------ consensus_8627#3 ------------------------------------------------------------ consensus_8627#0 CAGAGCGTTGATACATCTGGCACGATAGCTCCCCGCTCTCAACATAAAATTGTGCAAACA 747 consensus_8627#2 ------------------------------------------------------------ consensus_8627#1 ------------------------------------------------------------ consensus_8627#3 ------------------------------------------------------------ consensus_8627#0 TGTGGCAAGGAGGAAGGGCCATCTTCTTGAGATCTGAAGGATTCCACGCAGATAGGATAA 807 consensus_8627#2 ------------------------------------------------------------ consensus_8627#1 ------------------------------------------------------------ consensus_8627#3 ------------------------------------------------------------ consensus_8627#0 TTCGCCTATCGTCAGGATTATTCTTGATCTTGTCAATCACATCCATTAGCTGATCAAAGC 867 consensus_8627#2 ------------------------------------------------------------ consensus_8627#1 ------------------------------------------------------------ consensus_8627#3 ------------------------------------------------------------ consensus_8627#0 CTTTACCAGTATAGTCAGCATGCATGTCGGTATATTCAGCACCAAAGTGTCGCCATTGAA 927 consensus_8627#2 ------------------------------------------------------------ consensus_8627#1 ------------------------------------------------------------ consensus_8627#3 ------------------------------------------------------------ consensus_8627#0 ATCCATAAACTGGACCTAGATCACCTTCTTCCCTATGTGCTAAGCCAACACTGTCAAGAT 987 consensus_8627#2 ------------------------------------------------------------ consensus_8627#1 --------------------------------- consensus_8627#3 --------------------------------- consensus_8627#0 ACTCTCTCGAAGCATTGCCATCCCAAATATGAA 1020 consensus_8627#2 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||