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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1381 fasta sequence
[TCTTTTTTGGTGAAAATCCAATCCAAGTTATGCAAATCTTTACCTAGCTCCAGCACTCAGGCTTCAAGACTGTACATAACTAGCAGACGATCACAACACACGCGAACATACGAACTAATTAAGTTGGCTATATTACAATGCGGAATATTTATTAGGCAAACCGGGAGAGCTAATTAACTAAGGTAGTGGTAGTACTTAAATTAACCAGCAGCAGAGCTAGGTGGTGATGACTGATGAACATGACAACATGTTTATTTATGCATCTCCCAACCAATCACGTCGTCGTCGCCGTCGACGACGACGATGACCTGAGCGTGTTGATGGTCTTCTCGAGCTCGTCCTTGTCGGCGCCGACGATGCGGCCGACCTCCTCGCCGCCCCTCGCCAGCACGAACGTCGGCATCGCCTCCACCCGCCAGGTCCGCGCCACCTCCTGCGATCATTCAGAAATCTTCAGCTGTTCGCGAGCTCGTCGACGTCGACCTTGAGGAAGGCGACGTCGGTGAAGCGGCCGGCCATCTCCTTGAACACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTTTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTTAATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATANTTAATANTCCNACTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATGTGACAGTACGAGCTTAGTTTGTGATCATCGTACTGAAATATGTCATATCTAATATGAGATTAATTTATTTTGGGATAGAGGAACTAAAGCATAAGTTCACTTGTAGCATAAGAAAGAGGACAATACTAACAACTGAACTACTCTGCTCGTCTCAAAAAACCGCAGGCTAAACTCAACTGCTCCACTAGAAAAGGAAAACTGAAGGCTGCTGTACTGTGAGCTGTGGTTTATTATAGTGCCATTTTTATTAATTAAGAGTGCATTATCTAGAACACCTTGATGAGTACTGCTAGTAGGTGGATGAAGGTATCTGATTCATTGGGGGGCCGTTTGGTTTAAGGAGCGAGATGACCCATTGACCATATGCACATCAAAAGTAACAGAAAGCATCAGAATCCCGTAAAACTCATATGTTCATCTGGAACACTCGAATGTT]
[+] EMBL CB681257 [TCTTTTTTGGTGAAAATCCAATCCAAGTTATGCAAATCTTTACCTAGCTCCAGCACTCAGGCTTCAAGACTGTACATAACTAGCAGACGATCACAACACACGCGAACATACGAACTAATTAAGTTGGCTATATTACAATGCGGAATATTTATTAGGCAAACCGGGAGAGCTAATTAACTAAGGTAGTGGTAGTACTTAAATTAACCAGCAGCAGAGCTAGGTGGTGATGACTGATGAACATGACAACATGTTTATTTATGCATCTCCCAACCAATCACGTCGTCGTCGCCGTCGACGACGACGATGACCTGAGCGTGTTGATGGTCTTCTCGAGCTCGTCCTTGTCGGCGCCGACGATGCGGCCGACCTCCTCGCCGCCCCTCGCCAGCACGAACGTCGGCATCGCCTCCACCCGCCAGGTCCGCGCCACCTCCTGCGATCATTCAGAAATCTTCAGCTGTTCGCGAGCTCGTCGACGTCGACCTTGAGGAAGGCGACGTCGGTGAAGCGGCCGGCCATCTCCTTGAACACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTTTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTG ]
[-] EMBL C28850 [ AAACGG CGGCCA CNCCTTGAA AACGGC CCATCATCTTG ACGG CCACACCACGACGCCGAGAAG CTATCACCACCAGCTTTGTGGTG TCTTGT GGCGTCCCANAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCAC GCGGACTCGCCGCCCTCCT CCGGCGGCGGGCTTCGGCTTCGACGTCGAGAA GCGCCGCCCATCTTGTTACAGTGAGCTGANCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTTAATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATANTTAATANTCCNACTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATGTGACAGTACGAGCTTAGTTT ]
[-] EMBL AA750918 [ caCACCA CTTTGTGGTGTTCTTGTGGGGGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGACGGCCACCACG GGACT CCGCCCTCCT CCGGCGGCGGGCTTCGGCTTCGACGTCGAGAA GCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAA ]
[-] EMBL CB681256 [ AGTGGACGGCCACCACGGCGGACTCGCCGCCCTCATCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGAAGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTTAATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATATTTAATATTCTCACTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATGTGACAGTACGAGCTTAGTTTGTGATCATCGTACTGAAATATGTCATATCTAATATGAGATTAATTTATTTTGGGATAGAGGAACTAAAGCATAAGTTCACTTGTAGCATAAGAAAGAGGACAATACTAACAACTGAACTACTCTGCTCGTCTCAAAAAACCGCAGGCTAAACTCAACTGCTCCACTAGAAAAGGAAAACTGAAGGCTGCTGTACTGTGAGCTGTGGTTTATTATAGTGCCATTTTTATTAATTAAGAGTGCATTATCTAGAACACCTTGATGAGTACTGCTAGTAGGTGGATGAAGGTATCTGATTCATTGGGGGGCCGTTTGGTTTAAGGAGCGAGATGACCCATTGACCATATGCACATCAAAAGTAACAGAAAGCATCAGAATCCCGTAAAACTCATATGTTCATCTGGAACACTCGAATGTT]
consensusID : consensus_8628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[GCGAATAAAAATAGGGTGGCATAAACTCCCAGCGCGGAATATTTTTTCGCGCCAACCCCGGGAAAACTAAATTAACTAAGGAGGGGGTTAGTCCTAAATTAACCCACACACCAGACTTAGGGGGGGGAACGCCAAATAACCCAGCACACCCATGTTTATTTAAGCTATCTCCCCAACCAAACAAGTTTTTGGTCCCCCTTCGACGCCGACGAAGACCTGAGCGTTTGGAGGTTCTCCTGGAGCTCGTCCTGGTGGGCGCCGACGATGCGGCCGACTTCCTCGCAGGCCCTCGCAACCACGAACGTGGCCATCCCTCCCACCCGCCAGGTCCGCGCCACCTCCGCGAGCTCGTCGACGTCGACCTGGAGGAAGCCGACGTCGGTGAACCGCCCGCCCATCTCCTTGACCACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTNTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTGGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGT]
[-] EMBL CA754588 [GCGAATAAAAATAGGGTGGCATAAACTCCCAGCGCGGAATATTTTTTCGCGCCAACCCCGGGAAAACTAAATTAACTAAGGAGGGGGTTAGTCCTAAATTAACCCACACACCAGACTTAGGGGGGGGAACGCCAAATAACCCAGCACACCCATGTTTATTTAAGCTATCTCCCCAACCAAACAAGTTTTTGGTCCCCCTTCGACGCCGACGAAGACCTGAGCGTTTGGAGGTTCTCCTGGAGCTCGTCCTGGTGGGCGCCGACGATGCGGCCGACTTCCTCGCAGGCCCTCGCAACCACGAACGTGGCCATCCCTCCCACCCGCCAGGTCCGCGCCACCTCCGCGAGCTCGTCGACGTCGACCTGGAGGAAGCCGACGTCGGTGAACCGCCCGCCCATCTCCTTGACCACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCACCAGCTNTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTGGGAGTGGACGGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGAGAAGGCGCCGCCCATCTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8628#0 TCTTTTTTGGTGAAAATCCAATCCAAGTTATGCAAATCTTTACCTAGCTCCAGCACTCAG 60
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 GCTTCAAGACTGTACATAACTAGCAGACGATCACAACACACGCGAACATACGAACTAATT 120
consensus_8628#1 -----------------------------------------GCGAATAAA------AATA 13
***** * * ***
consensus_8628#0 AAGTTGGCTATATTAC-AATGCGGAATATTTATTAG-GCAAACC--GGGAGAGCTAA-TT 175
consensus_8628#1 GGGTGGCATAAACTCCCAGCGCGGAATATTTTTTCGCGCCAACCCCGGGAAAACTAAATT 73
** * ** * * * * *********** ** * ** **** **** * **** **
consensus_8628#0 AACTAAGGTAGTGGTAGTACTTAAATTAACCAGCAG--CAGAGCTAGGTGGTGATG-ACT 232
consensus_8628#1 AACTAAGGAGGGGGTTAGTCCTAAATTAACCCACACACCAGACTTAGGGGGGGGAACGCC 133
******** * *** * ********** ** **** **** ** * *
consensus_8628#0 GATGAACATGACAA---CATGTTTATTTATGC-ATCTCCC-AACCAATCACGTCGTCG-- 285
consensus_8628#1 AAATAACCCAGCACACCCATGTTTATTTAAGCTATCTCCCCAACCAAACAAGTTTTTGGT 193
* *** ** ************ ** ******* ****** ** ** * *
consensus_8628#0 TCGCCGTCGACGACGACGATGACCTGAGCGTGTTGATGGTCTTCTCGAGCTCGTCCTTGT 345
consensus_8628#1 CCCCCTTCGACGCCGACGAAGACCTGAGCGTTTGGAGGTTCTCCTGGAGCTCGTCCTGGT 253
* ** ****** ****** *********** * ** * *** ** *********** **
consensus_8628#0 CGGCGCCGACGATGCGGCCGACCTCCTCGCCGCCCCTCGCCAGCACGAACGTCGGCATCG 405
consensus_8628#1 GGGCGCCGACGATGCGGCCGACTTCCTCGCAGGCCCTCGCAACCACGAACGTGGCCATCC 313
********************* ******* * ******* * ********* * ****
consensus_8628#0 CCTCCACCCGCCAGGTCCGCGCCACCTCCTGCGATCATTCAGAAATCTTCAGCTGTTCGC 465
consensus_8628#1 CTCCCACCCGCCAGGTCCGCGCCACCTCC-----------------------------GC 344
* ************************** **
consensus_8628#0 GAGCTCGTCGACGTCGACCTTGAGGAAGGCGACGTCGGTGAAGCGGCCGGCCATCTCCTT 525
consensus_8628#1 GAGCTCGTCGACGTCGACCTGGAGGAAGCCGACGTCGGTGAACCGCCCGCCCATCTCCTT 404
******************** ******* ************* ** *** **********
consensus_8628#0 GAACACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCAC 585
consensus_8628#1 GACCACCGGCTCCATCATCTTGCACGGCCCACACCACGACGCCGAGAAGTCTATCACCAC 464
** *********************************************************
consensus_8628#0 CAGCTTTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTTGGAGTGGAC 645
consensus_8628#1 CAGCTNTGTGGTGTTCTTGTGGGCGTCCCACAGCTCGTCCCACTTGGCCTGGGAGTGGAC 524
***** ******************************************** *********
consensus_8628#0 GGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGA 705
consensus_8628#1 GGCCACCACGGCGGACTCGCCGCCCTCCTCGCCGGCGGCGGGCTTCGGCTTCGACGTCGA 584
************************************************************
consensus_8628#0 GAAGGCGCCGCCCATCTTGTTACAGTGAGCTGATCGAGGCACTGCAAGTCTGCAGCTGGA 765
consensus_8628#1 GAAGGCGCCGCCCATCTTGT---------------------------------------- 604
********************
consensus_8628#0 AGGGCTTGGGGTTCTTGGCTTTTGTAGGGGCTTGACCCCGTTGACTCATGACTCACATTT 825
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 AATATTCTTACTTAGAGCATAAGTTCTCTTTACAAAATATTACAATANTTAATANTCCNA 885
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 CTTACCAACCTCCCACCTGTCCCAAATAAACCAACATCGTACCACCTCGTATCTTAGATG 945
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 TGACAGTACGAGCTTAGTTTGTGATCATCGTACTGAAATATGTCATATCTAATATGAGAT 1005
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 TAATTTATTTTGGGATAGAGGAACTAAAGCATAAGTTCACTTGTAGCATAAGAAAGAGGA 1065
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 CAATACTAACAACTGAACTACTCTGCTCGTCTCAAAAAACCGCAGGCTAAACTCAACTGC 1125
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 TCCACTAGAAAAGGAAAACTGAAGGCTGCTGTACTGTGAGCTGTGGTTTATTATAGTGCC 1185
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 ATTTTTATTAATTAAGAGTGCATTATCTAGAACACCTTGATGAGTACTGCTAGTAGGTGG 1245
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 ATGAAGGTATCTGATTCATTGGGGGGCCGTTTGGTTTAAGGAGCGAGATGACCCATTGAC 1305
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 CATATGCACATCAAAAGTAACAGAAAGCATCAGAATCCCGTAAAACTCATATGTTCATCT 1365
consensus_8628#1 ------------------------------------------------------------
consensus_8628#0 GGAACACTCGAATGTT 1381
consensus_8628#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||