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Oryza sativa
cluster # 8633 cluster # 8633       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8633#0 length = 1609 sequences # 5  

consensusID : consensus_8633#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1609
fasta sequence
                              [ACCAAATGCTAAGGATGGTAAATGGTTAACCAGCGGAGCACTTTTTCCTGTTGGTAAGCACTGGTGGTCATGGTGCTATTTGGAAACTTGCATGTGATAGAGGTATATTCCAATGGCTTTACCAAAATGGCAGAAAAGGCGCAACTGTACGTCAAGTCAGCAATGTTGTGGCTGCAACTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTAAATGTACTAATCGAAAAAGAAAACCAGGATGGACAATGGGCATATGGTATCACTTGCATTGAATACACTGAGTTTGAAAAATATGGCATCCCAGAACCAACAGTAACAAATGGCAGTTTGCAGGCTAACTATCCAGCAAATACAAATATACTATATGTTGATCTGCAAGCAGCAGAGGAAGTTGGTTCGCGCAAAAATGCTAGCTGTTTACCCGGAATGGTGCTAAATTTGAAAAAAGCTGTGTCATACTTGGATCATCTGGGCTTTGAGTGTAGTGCTGCTGGAGGCAGGTTACAATGCACGATGCAAAACATAGCGGATAATTTTATGAACACATATAACTACAGGTGCAGTAAAGGAATAGAAAGTGAGCTAGACACATTCATTGTGTACAACGAAAGGAAAAAAGTCACTTCGTCAGCTAAAAGGAAGCTGAAATCAGAAGATAAGTCATTGCACCAGGTCAAAGACAACTGTGAATACTTGCGTTCTGGACCACCTTTTTCTATATTTCTTCATCCTGCTTTAGGTCCATTTTGGGATATCACAAGGCAGAAGTTTGTAGGTGGCTCGGTCTCTCAAGGTTCAGAATTGCAAATAGAGGTGGCAGAATTTCTATGGCAAGATGTTGAGCTCGATGGAAGCCTAATCGTTTTAGCTGACAATATTATGGGTTCAACCAACAAGAATAATACTGGAGAACAAATAATGCACTATGGTGCCAGGTGTGGGAGATGCAAACTGCGAAGTGTTAAAATTGTGAATAAAGGGATCAACTGGAGTTCTGCCAATAATGTCTACTGGAAGCATGATGTCGAGAGATCAGAATCTGTGAAGAT-CATTCTTCATGAAAATGCCGAATTTGAGGCAAAAGATGTTGTCCTTAAGGGTAACCATATCTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACGGTGGAACCTGGTACTGGAAGTATGCAGTAGATGGAGCTCATGTGAAGTTGGAAATGGTAGAACTATAAGGGCATTATCAACACT-AATTCTTGATTCATTGATTTCCAGCTAGCTTAATCATATCGAGGGCACACGTGACTAATGAATTTTGTTGACTAAAGTCCATCCTGTAGTTGCTGTTGTAAA-GGTTTTAGGTCTAAATAGATTGATGTACAGTGCACTT-GAATATTAAGGCATGCTGTCAGCCTATTCTCTTACTCATTCAATAAGTGATGTACGGACAGAGATATTTATAAAGGTTGAGGAGAATTCTCATTCTCTGAAATTCCCCCAAAAA]

[+] EMBL CB686021             [ACCAAATGCTAAGGATGGTAAATGGTTAACCAGCGGAGCACTTTTTCCTGTTGGTAAGCACTGGTGGTCATGGTGCTATTTGGAAACTTGCATGTGATAGAGGTATATTCCAATGGCTTTACCAAAATGGCAGAAAAGGCGCAACTGTACGTCAAGTCAGCAATGTTGTGGCTGCAACTGATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTAAATGTACTAATCGAAAAAGAAAACCAGGATGGACAATGGGCATATGGTATCACTTGCATTGAATACACTGAGTTTGAAAAATATGGCATCCCAGAACCAACAGTAACAAATGGCAGTTTGCAGGCTAACTATCCAGCAAATACAAATATACTATATGTTGATCTGCAAGCAGCAGAGGAAGTTGGTTCGCGCAAAAATGCTAGCTGTTTACCCGGAATGGTGCTAAATTTGAAAAAAGCTGTGTCATACTTGGATCATCTGGGCTTTGAGTGTAGTGCTGCTGGAGGCAGGTTACAATGCACGATGCAAAACATAGCGGATAATTTTATGAACACATATAACTACAGGTGCAGTAAAGGAATAGAAAGTGAGCTAGACACATTCATTGTGTACAACGAAAGGAAAAAAGTCACTTCGTCAGCTAAAAGGAAGCTGAAATCAGAAGATAAGTCATTGCACCAGGTCAAAGACAACTGTGAATACTTGCGTTCTGGACCACCTTTTTCTATATTTCTTCATCCTGCTTTAGGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU094035             [                                                                                                                                                                                     TTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGAAATTAGGTTTTGCGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTAAATGTACTAATCGAAAAAGAAAACCAGGATGGACAATGGGCATATGGTATCACTTGCATTGAATACACTGAGTTTGAAAAATATGGCATCCCAGAACCAACAGTAACAAATGGCAGTTTGCAGGCTAACTATCCAGCAAATACAAATATACTATATGTTGATCTGCAAGCAGCAGAGGAAGTTGGTTCGCGCAAAAATGCTAGCTGTTTACCCGGAATGGTGCTAAATTTGAAAAAAGCTGTGTCATACTTGGATCATCTGGGCTTTGAGTGTAGTGCTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA765265             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAACTGTGAATACTTGCGTTCTGGACCACCTTTTCTTATATTTCTTCATCCTGCTTTAGGTCCATTTTGGGATATCACAAGGCAGAAGTTTGTAGGTGGCTCGGTCTCTCAAGGTTCAGAATTGCAAATAGAGGTGGCAGAATTTCTATGGCAAGATGTTGAGCTCGATGGAAGCCTAATCGTTTTAGCTGACAATATTATGGGTTCAACCAACAAGAATAATACTGGAGAACAAATAATGCACTATGGTGCCAGGTGTGGGAGATGCAAACTGCGAAGTGTTAAAATTGTGAATAAAGGGATCAACTGGAGTTCTGCCAATAATGTCTACTGGAAGCATGATGTCGAGAGATCAGAATCTGTGAAGAT CATTCTTCATGAAAATGCCGAATTTGAGGCAAAAGATGTTGTCCTTAAGGGTAACCATATCTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACGGTGGAACCTGGTACTGGAAGTATGCAGTAGATGGAGCTCATGTGAAGTTGGAAATGGTAGAACTATAAGGGCATTATCAACACT AATTCTTGATTCATTGATTTCCAGCTAGCTTAATCATATCGAGGGCACACGTGACTAATGAATTTTGNTGACTAAAGTCCATCCTGTAGTTGCTGGTGTAAAGGGTTTTAGGTCTAAATAGATTGATGTACAGTGCACTTGGAATATTAA                                                                                                         ]
[-] EMBL CB628433             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATTTTGGGATATCACAAGGCAGAAGTTTGTAGGTGGCTCGGTCTCTCAAGGTTCAGAATTGCAAATAGAGGTGGCAGAATTTCTATGGCAAGATGTTGAGCTCGATGGAAGCCTAATCGTTTTAGCTGACAATATTATGGGTTCAACCAACAAGAATAATACTGGAGAACAAATAATGCACTATGGTGCCAGGTGTGGGAGATGCAAACTGCGAAGTGTTAAAATTGTGAATAAAGGGATCAACTGGAGTTCTGCCAATAATGTCTACTGGAAGCATGATGTCGAGAGATCAGAATCTGTGAAGAT CATTCTTCATGAAAATGCCGAATTTGAGGCAAAAGATGTTGTCCTTAAGGGTAACCATATCTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACGGTGGAACCTGGTACTGGAAGTATGCAGTAGATGGAGCTCATGTGAAGTTGGAAATGGTAGAACTATAAGGGCATTATCAACACTAAATTCTTGATTCATTGATTTCCAGCTAGCTTAATCATATCGAGGGCACACGTGACTAATGAATTTTGTTGACTAAAGTCCATCCTGTAGTTGCTGTTGTAAA GGTTTTAGGTCTAAATAGATTGATGTACAGTGCACTT GAATATTAAGGCATGCTGTCAGCCTATTCTCTTACTCATTCAATAAGTGATGTACGGACAGAGATATTTATAAAGGTTGAGGAGAATTCTCATTCTCTGA              ]
[+] EMBL AU094036             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TACTGGAAGCATGATGTCGAGAGATCAGAATCTGTGAAGATCCATTCTTCATGAAAATGCCGAATTTGAGGCAAAAGATGTTGTCCTTAAGGGTAACCATATCTTTGAAGTTCCCACTGGTCATAGAATGCGCATTGTTCAAGATGGACCAGAATTTGTTGCTAAGTTAGATCCCATAAGCAAGGAAATGATGGACAGTGGAACCTGGTACTGGAAGTATGCAGTAGATGGAGCTCATGTGAAGTTGGAAATGGTAGAACTATAAGGGCATTATCAACACTAAATTCTTGATTCATTGATTTCCAGCTAGCTTAATCATATCGAGGGCACACGTGACTAATGAATTTTGTTGACTAAAGTCCATCCTGTAGTTGCTGTTGTAAA GGTTTTAGGTCTAAATAGATTGATGTACAGTGCACTT GAATATTAAGGCATGCTGTCAGCCTATTCTCTTACTCATTCAATAAGTGATGTACGGACAGAGATATTTATAAATGTTGAGGAGAATTCTCATTCTCCGAAATTCCCCCAAAAA]


>consensus_8633#0 ACCAAATGCTAAGGATGGTAAATGGTTAACCAGCGGAGCACTTTTTCCTGTTGGTAAGCA CTGGTGGTCATGGTGCTATTTGGAAACTTGCATGTGATAGAGGTATATTCCAATGGCTTT ACCAAAATGGCAGAAAAGGCGCAACTGTACGTCAAGTCAGCAATGTTGTGGCTGCAACTG ATTTAACACTGATGGCATTGGCAGGAATAGGCCTGCGTCACGATAAGAAATTAGGTTTTG CGTCTTGTGAACGAAGACCAGGTGCTACTGAAGGGGTAAATGTACTAATCGAAAAAGAAA ACCAGGATGGACAATGGGCATATGGTATCACTTGCATTGAATACACTGAGTTTGAAAAAT ATGGCATCCCAGAACCAACAGTAACAAATGGCAGTTTGCAGGCTAACTATCCAGCAAATA CAAATATACTATATGTTGATCTGCAAGCAGCAGAGGAAGTTGGTTCGCGCAAAAATGCTA GCTGTTTACCCGGAATGGTGCTAAATTTGAAAAAAGCTGTGTCATACTTGGATCATCTGG GCTTTGAGTGTAGTGCTGCTGGAGGCAGGTTACAATGCACGATGCAAAACATAGCGGATA ATTTTATGAACACATATAACTACAGGTGCAGTAAAGGAATAGAAAGTGAGCTAGACACAT TCATTGTGTACAACGAAAGGAAAAAAGTCACTTCGTCAGCTAAAAGGAAGCTGAAATCAG AAGATAAGTCATTGCACCAGGTCAAAGACAACTGTGAATACTTGCGTTCTGGACCACCTT TTTCTATATTTCTTCATCCTGCTTTAGGTCCATTTTGGGATATCACAAGGCAGAAGTTTG TAGGTGGCTCGGTCTCTCAAGGTTCAGAATTGCAAATAGAGGTGGCAGAATTTCTATGGC AAGATGTTGAGCTCGATGGAAGCCTAATCGTTTTAGCTGACAATATTATGGGTTCAACCA ACAAGAATAATACTGGAGAACAAATAATGCACTATGGTGCCAGGTGTGGGAGATGCAAAC TGCGAAGTGTTAAAATTGTGAATAAAGGGATCAACTGGAGTTCTGCCAATAATGTCTACT GGAAGCATGATGTCGAGAGATCAGAATCTGTGAAGATCATTCTTCATGAAAATGCCGAAT TTGAGGCAAAAGATGTTGTCCTTAAGGGTAACCATATCTTTGAAGTTCCCACTGGTCATA GAATGCGCATTGTTCAAGATGGACCAGAATTTGTTGCTAAGTTAGATCCCATAAGCAAGG AAATGATGGACGGTGGAACCTGGTACTGGAAGTATGCAGTAGATGGAGCTCATGTGAAGT TGGAAATGGTAGAACTATAAGGGCATTATCAACACTAATTCTTGATTCATTGATTTCCAG CTAGCTTAATCATATCGAGGGCACACGTGACTAATGAATTTTGTTGACTAAAGTCCATCC TGTAGTTGCTGTTGTAAAGGTTTTAGGTCTAAATAGATTGATGTACAGTGCACTTGAATA TTAAGGCATGCTGTCAGCCTATTCTCTTACTCATTCAATAAGTGATGTACGGACAGAGAT ATTTATAAAGGTTGAGGAGAATTCTCATTCTCTGAAATTCCCCCAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)