cluster # 8638

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Oryza sativa
cluster # 8638 cluster # 8638 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8638#0 length = 1012 sequences # 3

consensus_8638#1 length = 634 sequences # 1
consensus_8638#2 length = 345 sequences # 1

consensusID : consensus_8638#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1012
fasta sequence

                              [GACCCTTGAGACTGCTTGTGACGAGCTTAGAAACAGCAGGCTGTTTCTGAAGCTACTTGAAGCTGTCCTGAAGACTGGCAACAGGATGAATGTTGGAACAAATCGCGGCGATGCACACGCGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCGAGTGCAAAAAGCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGTACCTGTAGATTATAGAATGTAAGAAGTTTTTTTGCAAATAATGATTTCTATATATAAGAGGAG]

[+] EMBL OSR25171A            [GACCCTTGAGACTGCTTGTGACGAGCTTAGAAACAGCAGGCTGTTTCTGAAGCTACTTGAAGCTGTCCTGAAGACTGGCAACAGGATGAATGTTGGAACAAATCGCGGCGATGCACACGCGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCGAGTGCAAAAAGCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGANGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK061290             [                                                                                                              ATGCACACGTGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCGAGTGCAAAAAGCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGTACCTGTAGATTAT                                                  ]
[-] EMBL CB683002             [                                                                                                                                                                                                                                                                                  TTACGGGACGAGCTCGAGTGCAAAAAGCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGTACCTGTAGATTATAGAATGTAAGAAGTTTTTTTGCAAATAATGATTTCTATATATAAGAGGAG]




>consensus_8638#0
GACCCTTGAGACTGCTTGTGACGAGCTTAGAAACAGCAGGCTGTTTCTGAAGCTACTTGA
AGCTGTCCTGAAGACTGGCAACAGGATGAATGTTGGAACAAATCGCGGCGATGCACACGC
GTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTAC
ACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAG
CAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCGAGTGCAAAAA
GCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGAAGGCAGC
TGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAA
GATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTT
CCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGC
TCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTC
TGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGT
TCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGT
GCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGC
TTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATC
ACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAG
AGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGTACCTGTAGATT
ATAGAATGTAAGAAGTTTTTTTGCAAATAATGATTTCTATATATAAGAGGAG

consensusID : consensus_8638#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [AGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGCCCCTCCATCTGAGAGCGGCTGTCAC]

[-] EMBL CB683001             [AGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACCGAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGCCCCTCCATCTGAGAGCGGCTGTCAC]




>consensus_8638#1
AGCAATGTCAAGAAGGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAA
CTTGCTGGAGGAATAGAGAAGATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCC
AGGGAAGATGCATGGAGGTTCCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGAC
GACATCATCAGGGTTCAGGCTCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCACC
GAGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTG
GTCAGGGATTTCCTCTCAGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGAC
CGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAG
TTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACT
TCAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGT
GGGAAACCTCCATAGGGCAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGA
ACCTTTTGCCCCTCCATCTGAGAGCGGCTGTCAC

consensusID : consensus_8638#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [AAATCGCGGNGATGCACACGCGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCTTTTTNNAAAAAGCTTGGCCTCCAGGTAGTGGGTGGCCTGGGNGGNGAGCTCAGCAACGCCCCCCCNNGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGNAACTAGAAAAAAAAAATATNAGAAGATCACTGAGGTGTTGCGGT]

[+] EMBL CA766563             [AAATCGCGGNGATGCACACGCGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCTTTTTNNAAAAAGCTTGGCCTCCAGGTAGTGGGTGGCCTGGGNGGNGAGCTCAGCAACGCCCCCCCNNGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGNAACTAGAAAAAAAAAATATNAGAAGATCACTGAGGTGTTGCGGT]




>consensus_8638#2
AAATCGCGGNGATGCACACGCGTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAA
AGGCACTGATGGCAAGACTACACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGA
GGGCTCCCACCTCTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACG
GGACGAGCTCTTTTTNNAAAAAGCTTGGCCTCCAGGTAGTGGGTGGCCTGGGNGGNGAGC
TCAGCAACGCCCCCCCNNGCAGCTGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCG
NAACTAGAAAAAAAAAATATNAGAAGATCACTGAGGTGTTGCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8638#0      GACCCTTGAGACTGCTTGTGACGAGCTTAGAAACAGCAGGCTGTTTCTGAAGCTACTTGA 60
consensus_8638#1      ------------------------------------------------------------
consensus_8638#2      ------------------------------------------------------------
                                                                                  

consensus_8638#0      AGCTGTCCTGAAGACTGGCAACAGGATGAATGTTGGAACAAATCGCGGCGATGCACACGC 120
consensus_8638#1      ------------------------------------------------------------
consensus_8638#2      ------------------------------------------------------------
                                                                                  

consensus_8638#0      GTTCAAGCTTGATACTCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGACTAC 180
consensus_8638#1      ------------------------------------------------------------
consensus_8638#2      ------------------------------------------------------------
                                                                                  

consensus_8638#0      ACTTTTGCATTTTGTCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCTCTCTGCTAG 240
consensus_8638#1      ------------------------------------------------------------
consensus_8638#2      ------------------------------------------------------------
                                                                                  

consensus_8638#0      CAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCGAGTGCAAAAA 300
consensus_8638#1      ------------------------------------------------------------
consensus_8638#2      ------------------------------------------------------------
                                                                                  

consensus_8638#0      GCTTGGCCTCCAGGTAGTGGCTGGCCTCGGAAACGAGCTCAGCAATGTCAAGAAGGCAGC 360
consensus_8638#1      ----------------------------------------AGCAATGTCAAGAAGGCAGC 20
consensus_8638#2      ------------------------------------------------------------
                                                                                  

consensus_8638#0      TGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAA 420
consensus_8638#1      TGCCATGGACTCCGACGTGCTAAGCAGCTATGTCTCGAAACTTGCTGGAGGAATAGAGAA 80
consensus_8638#2      ------------------------------------------------------------
                                                                                  

consensus_8638#0      GATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTT 480
consensus_8638#1      GATCACTGAGGTGTTGCGGTTGAATGAAGAAGTCAAGTCCAGGGAAGATGCATGGAGGTT 140
consensus_8638#2      ----------------------------------AAATC--GCGGNGATGCACACGCGTT 24
                                                        ** **  * *  ******     ***

consensus_8638#0      CCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGC 540
consensus_8638#1      CCATGATTCAATGCAGAAGTTCTTGAAGAGGGCTGATGACGACATCATCAGGGTTCAGGC 200
consensus_8638#2      CAA--GCTTGATAC----TCTACTCAAATTGGTTGATGTCAAAGGCACTGATGGCAAGAC 78
                      * *    *  ** *      *  * **   ** ***** * *   **     *   ** *

consensus_8638#0      TCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCA-CCGAGTACTTCCATGGTGACT 599
consensus_8638#1      TCAGGAGAGCGTTGCGCTATCACTTGTGAAGGAGATCA-CCGAGTACTTCCATGGTGACT 259
consensus_8638#2      T----ACACTTTTGCATTTTG--TCGTGCAGGAGATTATCCGAACGGAGGGCTCCCACCT 132
                      *    * *   ****  * *   * *** ******* * ****         *     **

consensus_8638#0      CTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTT-CATGGTGGTCA-GGGATTTCCTCTC 657
consensus_8638#1      CTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTT-CATGGTGGTCA-GGGATTTCCTCTC 317
consensus_8638#2      CTCTGCTAGCAACCAATCAACTCCACGAACTCAGGCAAACCCTTTACGGGACGAGCTCT- 191
                      **  *  **       *** *    *    **   **      * * ****    **** 

consensus_8638#0      AGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTC 717
consensus_8638#1      AGTTCTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTC 377
consensus_8638#2      --TTTTNNAAAAAGCTTGGCCTCCAGGTAGTGGG-----TGGCCTG--GGNGGNGAGCTC 242
                        ** *  *  ***  **      ** * *  **     ** **    *   *  *****

consensus_8638#0      GGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCA 777
consensus_8638#1      GGTGCGCCATTTCCCAGTACCCGTCAACCCAATGATGCCACAGTTGTTCCCCAGGATTCA 437
consensus_8638#2      AGCAACGCCCCCCCNNGCAGCTGCCA--TGGACTCCGACGTGCTAAGCAGCTATGTCTCG 300
                       *     *    **  * * * * **     *    * *    *      * * *  ** 

consensus_8638#0      TGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTG 837
consensus_8638#1      TGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTTCAGCATCATCACCTTG 497
consensus_8638#2      NAACTAGAAAAAAAAAATATNAGAAGATCA---CTGAGGTGTTGCGGT------------ 345
                          * ** *     *** * *** *** *    * **    * * *             

consensus_8638#0      ATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGG 897
consensus_8638#1      ATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGG 557
consensus_8638#2      ------------------------------------------------------------
                                                                                  

consensus_8638#0      CAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGTACCTGTAG 957
consensus_8638#1      CAGAGGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGCCCCTCCAT 617
consensus_8638#2      ------------------------------------------------------------
                                                                                  

consensus_8638#0      ATTATAGAATGTAAGAAGTTTTTTTGCAAATAATGATTTCTATATATAAGAGGAG 1012
consensus_8638#1      CTGAGAGCGGCTGTCAC-------------------------------------- 634
consensus_8638#2      -------------------------------------------------------