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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1699 fasta sequence
[CATCCCCCCAAGCCCAAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCGTCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCCGCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCGCCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGGTGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCAAGGAGCTCTGCGAGGAGTTGCGTGTTTCAGGTGGTATTATCCTTGCGCCGGAAGGGATCAATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAGACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTATCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGTGGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCATGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTGACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTAAGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATCAGTTTCAATTGGCTGAATCTGACAGTCAACTGTGCTCAGAAAATAATGACAATACAATTGGCAGACAGTCGGAAGATGTGAATTCAAGCAAACCCAAAGAGTTACCACGAGTTGCTATGTATTGCACTGGTGGCATAAGATGTGAAAAGGCATCAAGTTTCCTCCTTAGC-AGGGCTTTAAAGAGGTTTATCACTTGGAGGGTGGGATATTGAAGTACCTAGAGGAAATCCCCAAGGCAGAAAGCTTGTGGGAGGGTGAATGCTTTGTGTTTGACAAACGTGTCTCAGTGGAGCACGGATTAGCCCAAGGAACCCACAAACTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACATGGAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGAGGAGGAGAAGGAAAGGGCAAGGGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGGCGGCCCTGATAAAGGAAGAAGTCCAAAAAGGCTGGAAGCTAATCACACAGCTGAAGAGCCCAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCACTTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTCTTCTTTTGCACCTTTCTTGTAGTCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACGATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTTCCATCTGGTT-CTAATTGTAAAAACAGCAGTTACTCTTATGAGTTGCAGCAGTTTCATGAATAATTATGCGCTGAGCTAAAGAGGCACCGAGATATCGG]
[+] EMBL AK109472 [CATCCCCCCAAGCCCAAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCGTCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCCGCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCGCCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGGTGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCAAGGAGCTCTGCGAGGAGTTGCGTGTTTCAGGTGGTATTATCCTTGCGCCGGAAGGGATCAATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAGACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTATCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGTGGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCATGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTGACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTAAGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATCAGTTTCAATTGGCTGAATCTGACAGTCAACTGTGCTCAGAAAATAATGACAATACAATTGGCAGACAGTCGGAAGATGTGAATTCAAGCAAACCCAAAGAGTTACCACGAGTTGCTATGTATTGCACTGGTGGCATAAGATGTGAAAAGGCATCAAGTTTCCTCCTTAGC AGGGCTTTAAAGAGGTTTATCACTTGGAGGGTGGGATATTGAAGTACCTAGAGGAAATCCCCAAGGCAGAAAGCTTGTGGGAGGGTGAATGCTTTGTGTTTGACAAACGTGTCTCAGTGGAGCACGGATTAGCCCAAGGAACCCACAAACTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACATGGAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGAGGAGGAGAAGGAAAGGGCAAGGGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGGCGGCCCTGATAAAGGAAGAAGTCCAAAAAGGCTGGAAGCTAATCACACAGCTGAAGAGCCCAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCACTTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTCTTCTTTTGCACCTTTCTTGTAGTCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACGATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTTCCATCTGGTT CTAATTGTAAAAACAGCAGTTACTCTTATGAGTTGCAGCAGTTTCATGAATAATTATGCGCTGAGCTAAAGAGGCACCGAGATATCG ]
[+] EMBL CB636888 [ GCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCGTCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCCGCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCGCCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGGTGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCAAGGAGCTCTGCGAGGAGTTGCGTGTTTCAAGTGGTATTATCCTTGCGCCGGAAGGGATCAATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAGACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTATCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGTGGGATCAT ]
[-] EMBL CB651321 [ ATTGGCTGAATCTGACAGTCAACTGTGCTCAGAAAATAATGACAATACAATTGGCAGACAGTCGGAAGATGTGAATTCAAGCAAACCCAAAGAGTTACCACGAGTTGCTATGTATTGCACTGGTGGCATAAGATGTGAAAAGGCATCAAGTTTCCTCCTTAGCAAGGGCTTTAAAGAGGTTTATCACTTGGAGGGTGGGATATTGAAGTACCTAGAGGAAATCCCCAAGGCAGAAAGCTTGTGGGAGGGTGAATGCTTTGTGTTTGACAAACGTGTCTCAGTGGAGCACGGATTAGCCCAAGGAACCCACAAACTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACATGGAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGAGGAGGAGAAGGAAAGGGCAAGGGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGGCGGCCCTGATAAAGGAAGAAGTCCAAAAAGGCTGGAAGCTAATCACACAGCTGAAGAGCCCAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCACTTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTCTTCTTTTGCACCTTTCTTGTAGTCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACGATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTTCCATCTGGTT CTAATTGTAAAAACAGCAGTTACTCTTATGAGTTGCAGCAGTTTCATGAATAATTATGCGCTGAGATAAAGAGGCACCGAGATATCGG]
[-] EMBL CB636889 [ AGGTACCCACAAATTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACATGGAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGAGGAGGAGAAGGAAAGGGCAAGGGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGGCGGCCCTGATAAAGGAAGAAGTCCAAAAAGGTTGGAAGTTAATCACACAGCTGAAGAGCCCAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCACTTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTATTATTTTGCACCTTTCTTGTAGTCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACGATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTTCCATCTGGTTGCTAATTGTAAAAACAGCAGTTA TCTTATGAG TGCA ]
consensusID : consensus_8639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence
[AAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCGTCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCCGCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCGCCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGGTGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCAAGGAGCTCTGCGAGGAGTTGGTGGTATTATCCTTGCGCCGGAAGGGATCAATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAGACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTATCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGTGGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCATGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTGACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTAAGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATCAGTTTCAATTG]
[+] EMBL CB651320 [AAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCGTCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCCGCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCGCCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGGTGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCAAGGAGCTCTGCGAGGAGTTGGTGGTATTATCCTTGCGCCGGAAGGGATCAATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAGACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTATCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGTGGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCATGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTGACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTAAGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATCAGTTTCAATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8639#0 CATCCCCCCAAGCCCAAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCG 60
consensus_8639#1 ---------------AAATGCTGCCCTCCCCACCACTCGCCGCGCTCTCCAAAGCCGCCG 45
*********************************************
consensus_8639#0 CCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCG 120
consensus_8639#1 CCGCCGCCGCCGCCCGCCGCGCCGCCACGGTCGCCGCGCGCAGCCGCCGCCGCCTCCTCG 105
************************************************************
consensus_8639#0 TCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCC 180
consensus_8639#1 TCCTCCCCGCTGTCGCCTCGCTGGTACCGGGGCCACCTCCTGTGCTCTGCCGTCGCGTCC 165
************************************************************
consensus_8639#0 GCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCG 240
consensus_8639#1 GCCTCATGCCGCAGCTGGAGGGCCCGCGCGCTCCCCCGCCGCCGCACGGCAGGGGCTTCG 225
************************************************************
consensus_8639#0 CCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGG 300
consensus_8639#1 CCGCGGCCGCCGCCGGTGGGGATGGGGCTACACTGGATGCTGGTGATTCGGAGCTGGTGG 285
************************************************************
consensus_8639#0 TGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCA 360
consensus_8639#1 TGGTCTCCTTCTACAGGTTCGCCGACTTCCCCGACCACGCCGAGCTGCGGTGGCCGCTCA 345
************************************************************
consensus_8639#0 AGGAGCTCTGCGAGGAGTTGCGTGTTTCAGGTGGTATTATCCTTGCGCCGGAAGGGATCA 420
consensus_8639#1 AGGAGCTCTGCGAGGAGTTG----------GTGGTATTATCCTTGCGCCGGAAGGGATCA 395
******************** ******************************
consensus_8639#0 ATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAG 480
consensus_8639#1 ATGGTAGTATATGTGGAACACCAGAAGCTGTGGAGAAAGTCTTGAACTTCATTCAATCAG 455
************************************************************
consensus_8639#0 ACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTA 540
consensus_8639#1 ACGACCGCTTGAAAGGGTTACGGATGATCCAGTCTCCTGTTACTCCGGAAGACGAGGCTA 515
************************************************************
consensus_8639#0 TCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGT 600
consensus_8639#1 TCCATCATGGACATACCAGTCAATCTCCTGTTGGTGCTGGGGAAGATGCACCCTTCCGGT 575
************************************************************
consensus_8639#0 GGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCA 660
consensus_8639#1 GGGATCATGTCCGTGTGAAATTGAAAAAGGAGATAGTCGCACTTGGAGATCCCGGTGTCA 635
************************************************************
consensus_8639#0 TGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTG 720
consensus_8639#1 TGCCAACTAAAACAGTTGGAAAATATGTTAAGCCAAAAGACTGGAATGCATTGATAAGTG 695
************************************************************
consensus_8639#0 ACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTA 780
consensus_8639#1 ACCCAGATACTGTTGTTATTGATGTGCGCAACATGTATGAGATACGCATAGGAAAATTTA 755
************************************************************
consensus_8639#0 AGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATC 840
consensus_8639#1 AGAGAGCTGTTGATCCATGTACGAACTCATTCAGAGAGTTCCCATCTTGGGTTGATGATC 815
************************************************************
consensus_8639#0 AGTTTCAATTGGCTGAATCTGACAGTCAACTGTGCTCAGAAAATAATGACAATACAATTG 900
consensus_8639#1 AGTTTCAATTG------------------------------------------------- 826
***********
consensus_8639#0 GCAGACAGTCGGAAGATGTGAATTCAAGCAAACCCAAAGAGTTACCACGAGTTGCTATGT 960
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 ATTGCACTGGTGGCATAAGATGTGAAAAGGCATCAAGTTTCCTCCTTAGCAGGGCTTTAA 1020
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 AGAGGTTTATCACTTGGAGGGTGGGATATTGAAGTACCTAGAGGAAATCCCCAAGGCAGA 1080
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 AAGCTTGTGGGAGGGTGAATGCTTTGTGTTTGACAAACGTGTCTCAGTGGAGCACGGATT 1140
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 AGCCCAAGGAACCCACAAACTTTGTTATGGATGTAAGAAACCAGTTAGTGATGAAGACAT 1200
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 GGAATCTCCTGAGTGGGAGTATGGTGTATCATGTCCATATTGCTTTGCAACCAAATCCGA 1260
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 GGAGGAGAAGGAAAGGGCAAGGGCACGGCAGAGACAGTTTGAGACATGGGGAGTTATTGG 1320
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 CGGCCCTGATAAAGGAAGAAGTCCAAAAAGGCTGGAAGCTAATCACACAGCTGAAGAGCC 1380
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 CAAACAGTTGTCGAGCTCAGTCTAACTCAAACTGGGTAACTGAAACTTGTTCCATTACCA 1440
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 CTTCTGATTGATTGACGTTTTGCTGACGAAGCGAGGGATCCTTTTGTATCAGCCGCGTCT 1500
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 TCTTTTGCACCTTTCTTGTAGTCTTCCAGATTATGTCTTGGTCCCTTATGTAGCCTTACG 1560
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 ATAAAGCTTGAAGTTGTTTTTCGGTAGCACCGTTGTTTGTTCCATCTGGTTCTAATTGTA 1620
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 AAAACAGCAGTTACTCTTATGAGTTGCAGCAGTTTCATGAATAATTATGCGCTGAGCTAA 1680
consensus_8639#1 ------------------------------------------------------------
consensus_8639#0 AGAGGCACCGAGATATCGG 1699
consensus_8639#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||