These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1136 fasta sequence [AAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGGCGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCAGATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCAGGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTGCCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGAGGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTAGGGGTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGGTGTAAAGTTTTGGGATGGGATCTAAAGAGGGCCCAAAGCATTTTCCTTTTGCTGCTCAAGCAACAGTCTACAGCGTGGTGAACCTGAGTCAAAATAGCCTATTCATATTACTTGGGCAACCAAAAACATGGCCAAATTCAATATCATCTTTAAGACGAAATGGATTTTAATTTTTGGAGGAAGTTTGGTGTTGAATTTACGTTGCTTGCTACTAATTGTATGATGATTGCTTGACTCCGTTTTTGGAAGTTCATTATTGC] [+] EMBL AK061226 [AAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGGCGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCAGATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCAGGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTGCCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGAGGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTAGGGGTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGGTGTAAAGTTTTGGGATGGGATCTAAAGAGGGCCCAAAGCATTTTCCTTTTGCTGCTCAAGCAACAGTCTACAGCGTGGTGAACCTGAGTCAAAATAGCCTATTCATATTACTTGGGCAACCAAAAACATGGCCAAATTCAATATCATCTTTAAGACGAAATGGATTTTAATTTTTGGAGGAAGTTTGGTGTTGAATTTACGTTGCTTGCTACTAATTGTATGATGATTGCTTGACTCCGTTTTTGGAAGTTCATTATTGC] consensusID : consensus_8641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 988 fasta sequence [AAAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGGCGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCAGATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCAGGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTGCCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGAGGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTA-GGGGTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGTATGCAGAACTTCCGTAATGTTGCTGGAGGGGCTCAACAGCCAAGCCGAATTGCTTATATAGAGTTCTTTGTAAAGCCAGAGGAATATGAGATAAATGATGCGTAGGGATTG] [+] EMBL AK074010 [AAAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGGCGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCAGATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCAGGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTGCCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGAGGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTA GGGGTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGTATGCAGAACTTCCGTAATGTTGCTGGAGGGGCTCAACAGCCAAGCCGAATTGCTTATATAGAGTTCTTTGTAAAGCCAGAGGAATATGAGATAAATGATGCGTAGGGATTG] [+] EMBL CF304911 [ CCTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGA ] [+] EMBL CF304199 [ CTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTAGGGGGTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGTATGCAGAACTTCCGTAATGTTGCTGGAGGGGCTCAACAGCCAAGCCGAATTGCTTATATAGAGTT ] [+] EMBL CF304097 [ CTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8641#0 -AAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGG 59 consensus_8641#1 AAAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGG 60 *********************************************************** consensus_8641#0 CGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCA 119 consensus_8641#1 CGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCA 120 ************************************************************ consensus_8641#0 GATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCA 179 consensus_8641#1 GATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCA 180 ************************************************************ consensus_8641#0 GGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTG 239 consensus_8641#1 GGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTG 240 ************************************************************ consensus_8641#0 CCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGA 299 consensus_8641#1 CCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGA 300 ************************************************************ consensus_8641#0 GGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTC 359 consensus_8641#1 GGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTC 360 ************************************************************ consensus_8641#0 GGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCT 419 consensus_8641#1 GGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCT 420 ************************************************************ consensus_8641#0 TCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCC 479 consensus_8641#1 TCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCC 480 ************************************************************ consensus_8641#0 AGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTAC 539 consensus_8641#1 AGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTAC 540 ************************************************************ consensus_8641#0 TGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCAT 599 consensus_8641#1 TGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCAT 600 ************************************************************ consensus_8641#0 TCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGA 659 consensus_8641#1 TCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGA 660 ************************************************************ consensus_8641#0 CTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGA 719 consensus_8641#1 CTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGA 720 ************************************************************ consensus_8641#0 CCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCC 779 consensus_8641#1 CCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCC 780 ************************************************************ consensus_8641#0 AAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTAGGGGTGGGATGCT 839 consensus_8641#1 AAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTAGGGGTGGGATGCT 840 ************************************************************ consensus_8641#0 TAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGG-GTGTAAAGTTTTGGGATGGGATC 898 consensus_8641#1 TAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGTATGCAGAACTTCCGTAATGTTGC 900 ************************************ ** * * ** * * * * consensus_8641#0 TAAAGAGGGCCCAAAGCATTTTCCTTTTGCTGCTCAAGCAACAGTC-TACAGCGTGGTGA 957 consensus_8641#1 TGGAGGGGCTCAACAGCCAAGCCGAATTGCTTATATAGAGTTCTTTGTAAAGCCAGAGGA 960 * ** ** * * *** * ***** * ** * ** *** * ** consensus_8641#0 ACCTGAGTCAAAATAGCCTATTCATATTACTTGGGCAACCAAAAACATGGCCAAATTCAA 1017 consensus_8641#1 ATATGAGATAAA-TGATGCGTAGGGATTG------------------------------- 988 * **** *** * * *** consensus_8641#0 TATCATCTTTAAGACGAAATGGATTTTAATTTTTGGAGGAAGTTTGGTGTTGAATTTACG 1077 consensus_8641#1 ------------------------------------------------------------ consensus_8641#0 TTGCTTGCTACTAATTGTATGATGATTGCTTGACTCCGTTTTTGGAAGTTCATTATTGC 1136 consensus_8641#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||