cluster # 8646

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Oryza sativa
cluster # 8646 cluster # 8646 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8646#0 length = 740 sequences # 3

consensus_8646#1 length = 485 sequences # 2

consensusID : consensus_8646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 740
fasta sequence

                              [TCGCGGGAGACCACACATTAATTCCTCGCGCCCCATCCATCCATTCCCCTGCCATGGGCTGCTCGACCTCCAAGCTCGAGCCGAAGGACCAGCTGGACGCCTCGGCGCCGTCCCACCACCGCCGCCGCGGCTTTGCCAGCGACCTCTTTGGCCGCGCCACCAGGAAGAACCACCACAATGGTGGCAAGAGCGGGTGCGAAAGTGGCGACGCCGCCGTCCCCATGGCCGGCCGGCAGCATGAGGAGGAGCAGCCGCGGCAAGGGAAGAAGGGCGGCCGTGGCAAGCGCGAGGTGCAAGCGGGGTCGCCAAGCTTCCGGTACTACTGTGAGAATGCCGCCGCCGCCGCCTTCGGCGAACATCGAGGTCAAGCACCAACAACGCAAATATGATCTGTGGATGAACTCCTGGAACTTTTATCAATGCAGTGCGGGCCTACAAAAGAACAAATTATACCCCTAAGGAATGAGAGATGAATCAGATGGGTTATTAATCAGGAGCTGCAAGCAAATTAGGCGTTAAATCCAC-GACCTTTTTCGCCT-GTTCGTT-GC-TTTTCCTCGGCTGTTATATCTCCAGGGATCAAAGATGAAGAAAAAAAATAACTTCTGATGATATATATGTCAAGCAGATTCCCAATCATGGAGAGCATAACGCACTAGTCCCTGGAGAATTCATCGTAGCAGTTGTACCAAATGCAGTTTGTACATGTAATACCAACACGATGAATACAAATTAATTCCAGA]

[+] EMBL AK064740             [TCGCGGGAGACCACACATTAATTCCTCGCGCCCCATCCATCCATTCCCCTGCCATGGGCTGCTCGACCTCCAAGCTCGAGCCGAAGGACCAGCTGGACGCCTCGGCGCCGTCCCACCACCGCCGCCGCGGCTTTGCCAGCGACCTCTTTGGCCGCGCCACCAGGAAGAACCACCACAATGGTGGCAAGAGCGGGTGCGAAAGTGGCGACGCCGCCGTCCCCATGGCCGGCCGGCAGCATGAGGAGGAGCAGCCGCGGCAAGGGAAGAAGGGCGGCCGTGGCAAGCGCGAGGTGCAAGCGGGGTCGCCAAGCTTCCGGTACTACTGTGAGAATGCCGCCGCCGCCGCCTTCGGCGAACATCGAGGTCAAGCACCAACAACGCAAATATGATCTGTGGATGAACTCCTGGAACTTTTATCAATGCAGTGCGGGCCTACAAAAGAACAAATTATACCCCTAAGGAATGAGAGATGAATCAGATGGGTTATTAATCAGGAGCTGCAAGCAAATTAGGCGTTAAATCCAC GACCTTTTTCGCCT GTTCGTT GC TTTTCCTCGGCTGTTATATCTCCAGGGATCAAAGACGAAGAAAAAAAATAACTTCTGATGATATATAAGTCAAGCAGATTCCCAATCATGGAGAGCATAACGCACTAGTCCCTGGAGAATTCATCGTAGCAGTTGTACCAAATGCAGTTTGTACATGTAATACCAACACGATGAATACAAATTA        ]
[+] EMBL CA766416             [                                                                                                                                                                                                                                                                                GGCCGTGGCAAGCGCGAGGTGCAAGCGGGGTCGCCAAGCTTCCGGTACTACTGCGAGAATGCCGCCGCCGCCGCCTTCGGCGAACATCGAGGTCAAGCACCAACAACGCAAATATGATCTGTGGATGAACTCCTGGAACTCTTATCAATGCAGTGCGGGCCTACAAAAGAACAAATTATACCCCTAAGGAATGAGAGATGAATCAGATGGGTTATTAATCAGGAGCTGCAAGCAAATTAGGCGTTAAATCCAC GACCTTTTTCGCCT GTTCGTT GC TTTTCCTCGGCTGTTATATCTCCAGGGATCAAAGATGAAGAAAAAAAATAACTTCTGATGATATATATGTCAAGCAGATTCCCAATCATGGAGAGCATAACTCACTAGTCCCTGGAGAATTCATCGTAGCAGTTGTACCAAATGCAGTTTGTACATGTAATACCAACACGATGAATACAAATTAATTCCAGA]
[-] EMBL AA750403             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                caGTTAAATCCACGGACC TTTTCGCCTAGTTCGTTGGCACTTTCCTCGGCTGTTATATCTCCAGGGATCAAAGATGAAG AAAAAAATAACTTCTGATGATATATATGTCAAGCAGATTCCCAATCATGGAGAGCATAACGCACTAGTCCCTGGAGAATTCATCGTAGCAGTTGTACCAAATGCAGTTTGTACATGT                                  ]




>consensus_8646#0
TCGCGGGAGACCACACATTAATTCCTCGCGCCCCATCCATCCATTCCCCTGCCATGGGCT
GCTCGACCTCCAAGCTCGAGCCGAAGGACCAGCTGGACGCCTCGGCGCCGTCCCACCACC
GCCGCCGCGGCTTTGCCAGCGACCTCTTTGGCCGCGCCACCAGGAAGAACCACCACAATG
GTGGCAAGAGCGGGTGCGAAAGTGGCGACGCCGCCGTCCCCATGGCCGGCCGGCAGCATG
AGGAGGAGCAGCCGCGGCAAGGGAAGAAGGGCGGCCGTGGCAAGCGCGAGGTGCAAGCGG
GGTCGCCAAGCTTCCGGTACTACTGTGAGAATGCCGCCGCCGCCGCCTTCGGCGAACATC
GAGGTCAAGCACCAACAACGCAAATATGATCTGTGGATGAACTCCTGGAACTTTTATCAA
TGCAGTGCGGGCCTACAAAAGAACAAATTATACCCCTAAGGAATGAGAGATGAATCAGAT
GGGTTATTAATCAGGAGCTGCAAGCAAATTAGGCGTTAAATCCACGACCTTTTTCGCCTG
TTCGTTGCTTTTCCTCGGCTGTTATATCTCCAGGGATCAAAGATGAAGAAAAAAAATAAC
TTCTGATGATATATATGTCAAGCAGATTCCCAATCATGGAGAGCATAACGCACTAGTCCC
TGGAGAATTCATCGTAGCAGTTGTACCAAATGCAGTTTGTACATGTAATACCAACACGAT
GAATACAAATTAATTCCAGA

consensusID : consensus_8646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 485
fasta sequence

                              [CGAGCTCGNVSAATTCGGCAGGGGGCGAACATCGAGGTCAAGCACCAACAACGCAAATATGATCTGTGGATGAACTCCTGGAACTTTTATCAATGCAGTGCGGGCCTACAAAAGAACAAATTATACCCCTAAGGAATGAGAGATGAATCAGATGGGTTATTAATCAGGAGCTGCAAGCAAATTAGGCGTTAAATCCACGACCTTTTTCGCCTKTTCGTTGCTTTTCCTCGGCTGTTATATCTCCAGGGATCAAAGATGAAGAAAAAAAATAACTTCTGATGATATATATGTCAAGCAGATTCCCAATCATGGAG-AGCATAACGCACTAGTCCCTGGAGAATTCATCGTAGCAGTTGTACCAAATGCAGTTTGTACATGTAATACCAACACGATGAATACAAATTAATTCCAGATCGHTCTCAAACGAAAAAAAAAAAAAAAAAANAATAAYTKAWAAKAAAAAAAKAATAAAAAAAAAAAAAAAA]

[+] EMBL AA754429             [CGAGCTCGNVSAATTCGGCAGGGGGCGAACATCGAGGTCAAGCACCAACAACGCAAATATGATCTGTGGATGAACTCCTGGAACTTTTATCAATGCAGTGCGGGCCTACAAAAGAACAAATTATACCCCTAAGGAATGAGAGATGAATCAGATGGGTTATTAATCAGGAGCTGCAAGCAAATTAGGCGTTAAATCCACGACCTTTTTCGCCTKTTCGTTGCTTTTCCTCGGCTGTTATATCTCCAGGGATCAAAGATGAAGAAAAAAAATAACTTCTGATGATATATATGTCAAGCAGATTCCCAATCATGGAG AGCATAACGCACTAGTCCCTGGAGAATTCATCGTAGCAGTTGTACCAAATGCAGTTTGTACATGTAATACCAACACGATGAATACAAATTAATTCCAGATCGHTCTCAAACGAAAAAAAAAAAAAAAAAANAATAAYTKAWAAKAAAAAAAKAATAAAAAAAAAAAAAAAA]
[-] EMBL AA750401             [                                                                                                                                                                                                                                                                                       TGCTATATATGTC AGCAG TTCCCAATCATGGAGTCGCATAACGCACTAGTCCCTGGAGCATTCATCGTAGCAGTTGTACCAAATGCAGTTTGTACATGT ATACCAACACGATGAATACAAATTAATTCCAG                                                                         ]




>consensus_8646#1
CGAGCTCGNVSAATTCGGCAGGGGGCGAACATCGAGGTCAAGCACCAACAACGCAAATAT
GATCTGTGGATGAACTCCTGGAACTTTTATCAATGCAGTGCGGGCCTACAAAAGAACAAA
TTATACCCCTAAGGAATGAGAGATGAATCAGATGGGTTATTAATCAGGAGCTGCAAGCAA
ATTAGGCGTTAAATCCACGACCTTTTTCGCCTKTTCGTTGCTTTTCCTCGGCTGTTATAT
CTCCAGGGATCAAAGATGAAGAAAAAAAATAACTTCTGATGATATATATGTCAAGCAGAT
TCCCAATCATGGAGAGCATAACGCACTAGTCCCTGGAGAATTCATCGTAGCAGTTGTACC
AAATGCAGTTTGTACATGTAATACCAACACGATGAATACAAATTAATTCCAGATCGHTCT
CAAACGAAAAAAAAAAAAAAAAAANAATAAYTKAWAAKAAAAAAAKAATAAAAAAAAAAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8646#0      TCGCGGGAGACCACACATTAATTCCTCGCGCCCCATCCATCCATTCCCCTGCCATGGGCT 60
consensus_8646#1      ------------------------------------------------------------
                                                                                  

consensus_8646#0      GCTCGACCTCCAAGCTCGAGCCGAAGGACCAGCTGGACGCCTCGGCGCCGTCCCACCACC 120
consensus_8646#1      ------------------------------------------------------------
                                                                                  

consensus_8646#0      GCCGCCGCGGCTTTGCCAGCGACCTCTTTGGCCGCGCCACCAGGAAGAACCACCACAATG 180
consensus_8646#1      ------------------------------------------------------------
                                                                                  

consensus_8646#0      GTGGCAAGAGCGGGTGCGAAAGTGGCGACGCCGCCGTCCCCATGGCCGGCCGGCAGCATG 240
consensus_8646#1      ------------------------------------------------------------
                                                                                  

consensus_8646#0      AGGAGGAGCAGCCGCGGCAAGGGAAGAAGGGCGGCCGTGGCAAGCGCGAGGTGCAAGCGG 300
consensus_8646#1      ------------------------------------------------------------
                                                                                  

consensus_8646#0      GGTCGCCAAGCTTCCGGTACTACTGTGAGAATGCCGCCGCCGCCGCCTTCGGCGAACATC 360
consensus_8646#1      ---------------------------CGAGCTCGNVSAATTCGGCAGGGGGCGAACATC 33
                                                  **   *        * **    **********

consensus_8646#0      GAGGTCAAGCACCAACAACGCAAATATGATCTGTGGATGAACTCCTGGAACTTTTATCAA 420
consensus_8646#1      GAGGTCAAGCACCAACAACGCAAATATGATCTGTGGATGAACTCCTGGAACTTTTATCAA 93
                      ************************************************************

consensus_8646#0      TGCAGTGCGGGCCTACAAAAGAACAAATTATACCCCTAAGGAATGAGAGATGAATCAGAT 480
consensus_8646#1      TGCAGTGCGGGCCTACAAAAGAACAAATTATACCCCTAAGGAATGAGAGATGAATCAGAT 153
                      ************************************************************

consensus_8646#0      GGGTTATTAATCAGGAGCTGCAAGCAAATTAGGCGTTAAATCCACGACCTTTTTCGCCTG 540
consensus_8646#1      GGGTTATTAATCAGGAGCTGCAAGCAAATTAGGCGTTAAATCCACGACCTTTTTCGCCTK 213
                      *********************************************************** 

consensus_8646#0      TTCGTTGCTTTTCCTCGGCTGTTATATCTCCAGGGATCAAAGATGAAGAAAAAAAATAAC 600
consensus_8646#1      TTCGTTGCTTTTCCTCGGCTGTTATATCTCCAGGGATCAAAGATGAAGAAAAAAAATAAC 273
                      ************************************************************

consensus_8646#0      TTCTGATGATATATATGTCAAGCAGATTCCCAATCATGGAGAGCATAACGCACTAGTCCC 660
consensus_8646#1      TTCTGATGATATATATGTCAAGCAGATTCCCAATCATGGAGAGCATAACGCACTAGTCCC 333
                      ************************************************************

consensus_8646#0      TGGAGAATTCATCGTAGCAGTTGTACCAAATGCAGTTTGTACATGTAATACCAACACGAT 720
consensus_8646#1      TGGAGAATTCATCGTAGCAGTTGTACCAAATGCAGTTTGTACATGTAATACCAACACGAT 393
                      ************************************************************

consensus_8646#0      GAATACAAATTAATTCCAGA---------------------------------------- 740
consensus_8646#1      GAATACAAATTAATTCCAGATCGHTCTCAAACGAAAAAAAAAAAAAAAAAANAATAAYTK 453
                      ********************                                        

consensus_8646#0      --------------------------------
consensus_8646#1      AWAAKAAAAAAAKAATAAAAAAAAAAAAAAAA 485