cluster # 8650

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Oryza sativa
cluster # 8650 cluster # 8650 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8650#0 length = 769 sequences # 2

consensus_8650#1 length = 413 sequences # 1
consensus_8650#2 length = 264 sequences # 2

consensusID : consensus_8650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 769
fasta sequence

                              [CAACGGCAAGATGTTCGCCCACGACGGGGGTCTGGACAACTGTGCTCTCTCTCTTCTGTCAGACAACCCCACACCCACGGCGCAGATCACCATCCCACAGCCTCTCTTCGCCGGCGGCGGGCAGTACGGCGGCGGCGGCGGCGGCGACGTGTCGCTCACCGGCCTGTCCTACGTCAGAATGGCCGGCAAGGACACGTCCATCTTGGCAAAATCTGCCACTACCACTGCTACTACTGCTACTACTCCTACTACCACAAGTGCACAGCTGCAATACCATGGCTACTACCACCACCATGTCAGCGCCGATCAGGGTAGCTCCGATGCTGCAATCCAGGCTCTTCCTTTCTCATCGTGGTAGTGGAGATTCCGGGTTCCGATTTCGATCTCAGCGAGGCCCTGTTCTTGAGCTGAATTCCTGATAGATCAGATGCTAGGGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTGTATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCTGGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATTCACAATTGCATTATTAGAACTAGTGCTATTATTTTTGGAGGGTTATTGACTTGTACTGTAGTGGTACAGCTTTTGTTGTGTGTACATTTGGCTATCCACTTGATTGGTGTAGGGGCTAGTTCAGCAGGAACTAGACATAAGTTAACTGTACTTGAATAGTCAAATTAGCCTCAAAAGCTGGAGG]

[+] EMBL AK062581             [CAACGGCAAGATGTTCGCCCACGACGGGGGTCTGGACAACTGTGCTCTCTCTCTTCTGTCAGACAACCCCACACCCACGGCGCAGATCACCATCCCACAGCCTCTCTTCGCCGGCGGCGGGCAGTACGGCGGCGGCGGCGGCGGCGACGTGTCGCTCACCGGCCTGTCCTACGTCAGAATGGCCGGCAAGGACACGTCCATCTTGGCAAAATCTGCCACTACCACTGCTACTACTGCTACTACTCCTACTACCACAAGTGCACAGCTGCAATACCATGGCTACTACCACCACCATGTCAGCGCCGATCAGGGTAGCTCCGATGCTGCAATCCAGGCTCTTCCTTTCTCATCGTGGTAGTGGAGATTCCGGGTTCCGATTTCGATCTCAGCGAGGCCCTGTTCTTGAGCTGAATTCCTGATAGATCAGATGCTAGGGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTGTATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCTGGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATTCACAATTGCATTATTAGAACTAGTGCTATTATTTTTGGAGGGTTATTGACTTGTACTGTAGTGGTACAGCTTTTGTTGTGTGTACATTTGGCTATCCACTTGATTGGTGTAGGGGCTAGTTCAGCAGGAACTAGACATAAGTTAACTGTACTTGAATAGTCAAATTAGCCTCAAAAGCTGGAGG]
[+] EMBL CA753280             [                                                                                                                                                                                                                                                                    CACAGCTGCAATACCATGGCTACTACCACCACCATGTCAGCGCCGATCAGGGTAGCTCCGATGCTGCAATCCAGGCTCTTCCTTTCTCATCGTGGTAGTGGAGATTCCGGGTTCCGATTTCGATCTCAGCGAGGCCTTGTTCTTGAGCTGAATTCCTGATAGATCAGATGCTAGGGAGATGGTAATGTTGTTCAACAAAATACGTCAGTGATAATAGTTGTATTATCTTGGTGATACTGAAAAATATTCACCATGATATGCACATTTTCCAACTTTGCCTGGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATTCACAATTGCATTATTAGAACTAGTGATATTATTTGTGGAGGGTTATTGACTTGTACTGTAGTGGTACTGTTCTTGTNGTGTGTACATTTGGCTATCCACTTGATTGGTGTCCGGGCTAGTTCAGCAGGAACTAGACATAAGTTAACTGTACTTGAATAGTCAAAaaaac               ]




>consensus_8650#0
CAACGGCAAGATGTTCGCCCACGACGGGGGTCTGGACAACTGTGCTCTCTCTCTTCTGTC
AGACAACCCCACACCCACGGCGCAGATCACCATCCCACAGCCTCTCTTCGCCGGCGGCGG
GCAGTACGGCGGCGGCGGCGGCGGCGACGTGTCGCTCACCGGCCTGTCCTACGTCAGAAT
GGCCGGCAAGGACACGTCCATCTTGGCAAAATCTGCCACTACCACTGCTACTACTGCTAC
TACTCCTACTACCACAAGTGCACAGCTGCAATACCATGGCTACTACCACCACCATGTCAG
CGCCGATCAGGGTAGCTCCGATGCTGCAATCCAGGCTCTTCCTTTCTCATCGTGGTAGTG
GAGATTCCGGGTTCCGATTTCGATCTCAGCGAGGCCCTGTTCTTGAGCTGAATTCCTGAT
AGATCAGATGCTAGGGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTG
TATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCT
GGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATTCACAATTGCATTATT
AGAACTAGTGCTATTATTTTTGGAGGGTTATTGACTTGTACTGTAGTGGTACAGCTTTTG
TTGTGTGTACATTTGGCTATCCACTTGATTGGTGTAGGGGCTAGTTCAGCAGGAACTAGA
CATAAGTTAACTGTACTTGAATAGTCAAATTAGCCTCAAAAGCTGGAGG

consensusID : consensus_8650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [CTTGGCAAAATCTGCCACTACCACTGCTACTACTGCTACTACTCCTACTACCACAAGTGCACAGCTGCAATACCATGGCTACTACCACCACCATGTCAGCGCCGATCAGGGTAGCTCCGATGCTGCAATCCAGGCTCTTCCTTTCTCATCGTGGTAGTGGAGATTCCGGGTTCCGATTTCGATCTCAGCGAGGCCCTGTTCTTGAGCTGAATTCCTGATAGATCAGATGCTAGGGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTGTATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCTGGTATTTCCAGTTTATGGGAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA]

[+] EMBL AU070781             [CTTGGCAAAATCTGCCACTACCACTGCTACTACTGCTACTACTCCTACTACCACAAGTGCACAGCTGCAATACCATGGCTACTACCACCACCATGTCAGCGCCGATCAGGGTAGCTCCGATGCTGCAATCCAGGCTCTTCCTTTCTCATCGTGGTAGTGGAGATTCCGGGTTCCGATTTCGATCTCAGCGAGGCCCTGTTCTTGAGCTGAATTCCTGATAGATCAGATGCTAGGGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTGTATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCTGGTATTTCCAGTTTATGGGAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA]




>consensus_8650#1
CTTGGCAAAATCTGCCACTACCACTGCTACTACTGCTACTACTCCTACTACCACAAGTGC
ACAGCTGCAATACCATGGCTACTACCACCACCATGTCAGCGCCGATCAGGGTAGCTCCGA
TGCTGCAATCCAGGCTCTTCCTTTCTCATCGTGGTAGTGGAGATTCCGGGTTCCGATTTC
GATCTCAGCGAGGCCCTGTTCTTGAGCTGAATTCCTGATAGATCAGATGCTAGGGAGATG
GTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTGTATTATCTTGGTGATACTGAA
AAATATTCACCACGATATGCACATTTTCCAACTTTGCCTGGTATTTCCAGTTTATGGGAA
AAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA

consensusID : consensus_8650#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 264
fasta sequence

                              [ATGGACTGAAGGAGTAGAAAGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTGTATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCTGGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATTCACAATTGCATTATTAGAACTAGTGCTATTATTTTTGGAGGGTTAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA]

[+] EMBL CF308085             [ATGGACTGAAGGAGTAGAAAGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTGTATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCTGGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATTCACAATTGCATTATTAGAACTAGTGCTATTATTTTTGGAGGGTTAAAAA                                             ]
[-] EMBL CF308086             [ TGGACTGAAGGAGTAGAAAGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTGTATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCTGGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATTCACAATTGCATTATTAGAACTAGTGCTATTATTTTTGGAGGGTTAAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGA]




>consensus_8650#2
ATGGACTGAAGGAGTAGAAAGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAAT
AGTTGTATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTT
TGCCTGGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATTCACAATTGCA
TTATTAGAACTAGTGCTATTATTTTTGGAGGGTTAAAAAAAAAAAAAAAAAACAATGTCA
TGCCGTTACGTAGCGTATCGTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8650#0      CAACGGCAAGATGTTCGCCCACGACGGGGGTCTGGACAACTGTGCTCTCTCTCTTCTGTC 60
consensus_8650#1      ------------------------------------------------------------
consensus_8650#2      ------------------------------------------------------------
                                                                                  

consensus_8650#0      AGACAACCCCACACCCACGGCGCAGATCACCATCCCACAGCCTCTCTTCGCCGGCGGCGG 120
consensus_8650#1      ------------------------------------------------------------
consensus_8650#2      ------------------------------------------------------------
                                                                                  

consensus_8650#0      GCAGTACGGCGGCGGCGGCGGCGGCGACGTGTCGCTCACCGGCCTGTCCTACGTCAGAAT 180
consensus_8650#1      ------------------------------------------------------------
consensus_8650#2      ------------------------------------------------------------
                                                                                  

consensus_8650#0      GGCCGGCAAGGACACGTCCATCTTGGCAAAATCTGCCACTACCACTGCTACTACTGCTAC 240
consensus_8650#1      ---------------------CTTGGCAAAATCTGCCACTACCACTGCTACTACTGCTAC 39
consensus_8650#2      ------------------------------------------------------------
                                                                                  

consensus_8650#0      TACTCCTACTACCACAAGTGCACAGCTGCAATACCATGGCTACTACCACCACCATGTCAG 300
consensus_8650#1      TACTCCTACTACCACAAGTGCACAGCTGCAATACCATGGCTACTACCACCACCATGTCAG 99
consensus_8650#2      ------------------------------------------------------------
                                                                                  

consensus_8650#0      CGCCGATCAGGGTAGCTCCGATGCTGCAATCCAGGCTCTTCCTTTCTCATCGTGGTAGTG 360
consensus_8650#1      CGCCGATCAGGGTAGCTCCGATGCTGCAATCCAGGCTCTTCCTTTCTCATCGTGGTAGTG 159
consensus_8650#2      ------------------------------------------------------------
                                                                                  

consensus_8650#0      GAGATTCCGGGTTCCGATTTCGATCTCAGCGAGGCCCTGTTCTTGAGCTGAATTCCTGAT 420
consensus_8650#1      GAGATTCCGGGTTCCGATTTCGATCTCAGCGAGGCCCTGTTCTTGAGCTGAATTCCTGAT 219
consensus_8650#2      --------------------------------------------------ATGGACTGAA 10
                                                                        *    **** 

consensus_8650#0      AGATCAGATGCTAGGGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTG 480
consensus_8650#1      AGATCAGATGCTAGGGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTG 279
consensus_8650#2      GGAGTAG-----AAAGAGATGGTAATGTTGTTCAACAAAATATGTCAGTGATAATAGTTG 65
                       **  **     *  *********************************************

consensus_8650#0      TATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCT 540
consensus_8650#1      TATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCT 339
consensus_8650#2      TATTATCTTGGTGATACTGAAAAATATTCACCACGATATGCACATTTTCCAACTTTGCCT 125
                      ************************************************************

consensus_8650#0      GGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATTCACAATTGCATTATT 600
consensus_8650#1      GGTATTTCCAGTTTATGGGAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAG 399
consensus_8650#2      GGTATTTCCAGTTTATGGGAAATACCCCCAAGCCAGCTTATGATTCACAATTGCATTATT 185
                      ********************** *     **   *    *  *   * **    *  *  

consensus_8650#0      AGAACTAGTGCTATTATTTTTGGAGGGTTATTGACTTGTACTGTAGTGGTACAGCTTTTG 660
consensus_8650#1      AAAAAAAAAAAAAA---------------------------------------------- 413
consensus_8650#2      AGAACTAGTGCTATTATTTTTGGAGGGTTAAAAAAAAAAAAAAAAAACAATGTCATGCCG 245
                      * **  *     *                                               

consensus_8650#0      TTGTGTGTACATTTGGCTATCCACTTGATTGGTGTAGGGGCTAGTTCAGCAGGAACTAGA 720
consensus_8650#1      ------------------------------------------------------------
consensus_8650#2      TTACGTAGCGTATCGTTGA----------------------------------------- 264
                                                                                  

consensus_8650#0      CATAAGTTAACTGTACTTGAATAGTCAAATTAGCCTCAAAAGCTGGAGG 769
consensus_8650#1      -------------------------------------------------
consensus_8650#2      -------------------------------------------------