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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1198 fasta sequence
[TACACAGTGTTACTGTAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTGCTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGTGAGTGAGAGGAGTGAAGATGGGGAGGTGTGTGGTCATAGGAGTGCGAAGGTCAACGCCGATGGGGGAAGGACCTGCGGTCGCCAGATCCGGCGACCCCACCTCTCGCAGGCGATAGATCGGCCGGCTCCCGTTCCTCCCAATGTGGGATCTGCGCGCCTACGACGAGCAGCTGCTCATCTCGGTCCGTGCCTCATCGAAGTGAGGAGGCACTTGCTCTGATTATGTGTTGACGAGGACGGCGCAGGCGCGCAGCCCGGCGTCCGGCGGTGGCTGCTTCCGTGGCCTCAAGTGACGCTGCTGAAGCTGACGATCTGGGCATCCGGCATATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCAGCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCCTCCAAATCCCTCTCTCTCTCTCCTCTCCTCTCTGCCGAGTAAACCGTCATCGAGAGAACATTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTTTTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTCTCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCTTGCTGGTG-TTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGATAGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTGCAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAATGGGATATCAT]
[+] EMBL AK069417 [TACACAGTGTTACTGTAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTGCTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGTGAGTGAGAGGAGTGAAGATGGGGAGGTGTGTGGTCATAGGAGTGCGAAGGTCAACGCCGATGGGGGAAGGACCTGCGGTCGCCAGATCCGGCGACCCCACCTCTCGCAGGCGATAGATCGGCCGGCTCCCGTTCCTCCCAATGTGGGATCTGCGCGCCTACGACGAGCAGCTGCTCATCTCGGTCCGTGCCTCATCGAAGTGAGGAGGCACTTGCTCTGATTATGTGTTGACGAGGACGGCGCAGGCGCGCAGCCCGGCGTCCGGCGGTGGCTGCTTCCGTGGCCTCAAGTGACGCTGCTGAAGCTGACGATCTGGGCATCAGGCATATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCAGCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCCTCCAAATCCCTCTCTCTCTCTCCTCTCCTCTCTGCCGAGTAAACCGTCATCGAGAGAACATTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTTTTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTCTCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCTTGCTGGTG TTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGATAGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTGCAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAATGGGATATCAT]
[+] EMBL AK103613 [ GAAATGCCCTTGTACTACTCGCCTTCTCTTGCTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGTGAGTGAGAGGAGTGAAGATGGGGAGGTGTGTGGTCATAGGAGTGCGAAGGTCAACGCCGATGGGGGAAGGACCTGCGGTCGCCAGATCCGGCGACCCCACCTCTCGCAGGCGATAGATCGGCCGGCTCCCGTTCCTCCCAATGTGGGATCTGCGCGCCTACGACGAGCAGCTGCTCATCTCGGTCCGTGCCTCATCGAAGTGAGGAGGCACTTGCTCTGATTATGTGTTGACGAGGACGGCGCAGGCGCGCAGCCCGGCGTCCGGCGGTGGCTGCTTCCGTGGCCTCAAGTGACGCTGCTGAAGCTGACGATCTGGGCATCCGGCATATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCAGCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCCTCCAAATCCCTCTCTCTCTCTCCTCTCCTCTCTGCCGAGTAAACCGTCATCGAGAGAACATTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTTTTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTCTCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCTTGCTGGTGTTTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGATAGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTGCAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAATGGGATATC ]
[+] EMBL AK105728 [ GTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGTGAGTGAGAGGAGTGAAGATGGGGAGGTGTGTGGTCATAGGAGTGCGAAGGTCAACGCCGATGGGGGAAGGACCTGCGGTCGCCAGATCCGGCGACCCCACCTCTCGCAGGCGATAGATCGGCCGGCTCCCGTTCCTCCCAATGTGGGATCTGCGCGCCTACGACGAGCAGCTGCTCATCTCGGTCCGTGCCTCATCGAAGTGAGGAGGCACTTGCTCTGATTATGTGTTGACGAGGACGGCGCAGGCGCGCAGCCCGGCGTCCGGCGGTGGCTGCTTCCGTGGCCTCAAGTGACGCTGCTGAAGCTGACGATCTGGGCATCCGGCATATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCAGCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCCTCCAAATCCCTCTCTCTCTCTCCTCTCCTCTCTGCCGAGTAAACCGTCATCGAGAGAACATTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTTTTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTCTCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCTTGCTGGTG TTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGATAGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTGCAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAATGGGATATC ]
[-] EMBL CF309762 [ GCTGCTGAAGCTGACGATCTGGGCATCCGGCATATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCAGCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCCTCCAAATCCCTCTCTCTCTCTCCTCTCCTCTNTGCCGAGTAAACCGTCATCGAGAGAACATTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTTTTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTCTCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCTTGCTGGTG TTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGATAGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTGCAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAAaaaa ]
consensusID : consensus_8671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence
[CATGGACTCAAGGAGTAGAAAAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTGCTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGT]
[+] EMBL CF309761 [CATGGACTCAAGGAGTAGAAAAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTGCTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCCCGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTCGGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGCTGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATGGCGCGCATCGGCGCATCAACGTCGGGGAGGAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8671#0 ----TACACAGTGT-TACTGTAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTG 55
consensus_8671#1 CATGGACTCAAGGAGTAGAAAAGATTCCTGAAATGCCCTTGTACTACTCGCCTTCTCTTG 60
** ** * ** ***************************************
consensus_8671#0 CTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCC 115
consensus_8671#1 CTGCAGACTATTGGGGCACTCGCGGCGAGCTTGTCCGTTGAGAGGCGGCGAGGTTGCGCC 120
************************************************************
consensus_8671#0 CGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTC 175
consensus_8671#1 CGACCACCGCGCGATGTCAACCCTGATCATAGCCAAGATGAGGGCCGGTACTAGGGGCTC 180
************************************************************
consensus_8671#0 GGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGC 235
consensus_8671#1 GGCCACTCGAGCTTGACTCCCGGGGCGAGGTTGTGCCTGACCGCCGGTGAGCTGCGACGC 240
************************************************************
consensus_8671#0 TGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATG 295
consensus_8671#1 TGTGACGAGCTTGATCCCGACTGCATGAGGCGTAGTGAGTGCCTCAACCAGTCTCTCATG 300
************************************************************
consensus_8671#0 GCGCGCATCGGCGCATCAACGTCGGGGAGGAGTGAGTGAGAGGAGTGAAGATGGGGAGGT 355
consensus_8671#1 GCGCGCATCGGCGCATCAACGTCGGGGAGGAGT--------------------------- 333
*********************************
consensus_8671#0 GTGTGGTCATAGGAGTGCGAAGGTCAACGCCGATGGGGGAAGGACCTGCGGTCGCCAGAT 415
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 CCGGCGACCCCACCTCTCGCAGGCGATAGATCGGCCGGCTCCCGTTCCTCCCAATGTGGG 475
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 ATCTGCGCGCCTACGACGAGCAGCTGCTCATCTCGGTCCGTGCCTCATCGAAGTGAGGAG 535
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 GCACTTGCTCTGATTATGTGTTGACGAGGACGGCGCAGGCGCGCAGCCCGGCGTCCGGCG 595
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 GTGGCTGCTTCCGTGGCCTCAAGTGACGCTGCTGAAGCTGACGATCTGGGCATCCGGCAT 655
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 ATCAAGCTGCAGCGGAACCGGCGGTGAGCACAAATCTGGGAGTCGCAATCGCATCCCCCA 715
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 GCCAGCCGACATGCACGATTTCTGCAGCTTCAATTCCTCATCCTTCACCGCACATCTTCC 775
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 TCCAAATCCCTCTCTCTCTCTCCTCTCCTCTCTGCCGAGTAAACCGTCATCGAGAGAACA 835
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 TTAGTTAGCTCTTGAGAAAAATCCCAGTTTCATGTGCGTATTTGTTTTTGGTGTGCTGTT 895
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 TTTTTTTTAATTTCTAGTTCTCGAAGACTTTTGCTGGATACTATCTTCTTCCCATGCTTC 955
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 TCGCAGGCTATCGTCTTCAATGTGTTGATGTGTTCCGATATGTAATCCTAACAATCTTCT 1015
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 TGCTGGTGTTTTTTTTTTCCTTGTGGTGTGCACTCCGCTGACTCAGGCATGCTGATCGAT 1075
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 AGCCATCGACTCCAGGAAGTTCTGATCAGCCGCACCAGAGGCTTGCGTTGTGAAGAGGTG 1135
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 CAAATCGCTTTGATTCAGTGATATTCATGAAAGAACCTCTGTTTGCGCTCAATGGGATAT 1195
consensus_8671#1 ------------------------------------------------------------
consensus_8671#0 CAT 1198
consensus_8671#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||