These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1546 fasta sequence [CTCCTCTCCTCCTTGTCCGTCTCGATCTAGTCGGATCCGGAGCGGCGGTGTTTGAGGAGGCCGAGGCGGCGGCGTGGATCCAGAGCGGTGATGGCGAGGAGGCCGAGGCGGCGGCGTGGATCCGGAGCGGCGACGGTCGAGGAGGCCGAGGCGGATTGATCTCTCTTCTCCTCCCTTGCCGGCTCCCCTCTCACCTCACCTCTCTGGACGAGCGGCGGCGAAGGTGGAGAAAGAGGAGGCGAAGGTGGAGAAAGAGGAGGAGGCGAGGTCGCGCCGAATCGAAGCAATGACTTCCACAGTGCGAGTTTCCTTCGCCACGCGCCCTCGTTGCAGCGAGAAAACACGTCTCCCAGTTAGGGGGCGAGCGGCCGAGCGAAGGTGCGGGTCTCAGCGCCATGTACGCGTGAATCTGAGCTGGCGCAGTAGGTAACTCCTCCATGTAGAAGAACTGTGAAGGGCCATAGATCCGATCAACAAATCATCCAAACCGTACATTACACAGTACAAAAGGCTACTATACCAAGTAAATCTTCCTTTTTACCATTAGAGAGAGATACACTGTGTGGCAGTATGACTGTGTGTGACACTCTTGAGTGTGGTCGTACTATAAAACCATGAATCCATCTCAGATTCTCAGGTTTGCAAGCCTAGGGTAGACCATCGACCAAATCCAATGGCTGCTTGGCTCGCCTCGCTGACCATCTCCTTCTTCCTCTTCTTCCTCCATGGCGCCATGGCCATGTCCACCGCCGCGCAGCTCGCCGGGGAGGCGCCGCCGGCGTAGCTGCCAAGGTCAGAACTGGCTGCCATCTGTAGGGTGATGGCTGACCTCCTCGGCGACCCGACGTGGCCGCAGCTCCACCGGCGTCCCTGCACGGACACGCCATGGCCGGGACTCCAGTGCGAGCTCGCCCCCGACGACGCCCGCCACCTGCGCGCCACCAGGCTCCACTTCGGCCCCGACGTCGCCACCCCGCCGTGCAGGCCCGGCGCCAGGCTCGCCGCGCCCGTGCTCCTGGGACTCCCCCACCTCAAGACGCTCTCCCTCTTCGGCTGCTTCGTCGTCGCCGACTGTTAGAAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATATGCATGTGTGTATTGCATGGCCTGGAGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGGCAGTGAGTAGTGAGCCAATAAAAAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTAGTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTATGAGTAGGATGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGGTGGTGCAAGCAACGACGTCGGCGAGGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGGCGTGGGCGTCGTGTGTGGCTCGAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTGTTATAAATAGCTGCTCATTGTAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTT] [+] EMBL AK072883 [CTCCTCTCCTCCTTGTCCGTCTCGATCTAGTCGGATCCGGAGCGGCGGTGTTTGAGGAGGCCGAGGCGGCGGCGTGGATCCAGAGCGGTGATGGCGAGGAGGCCGAGGCGGCGGCGTGGATCCGGAGCGGCGACGGTCGAGGAGGCCGAGGCGGATTGATCTCTCTTCTCCTCCCTTGCCGGCTCCCCTCTCACCTCACCTCTCTGGACGAGCGGCGGCGAAGGTGGAGAAAGAGGAGGCGAAGGTGGAGAAAGAGGAGGAGGCGAGGTCGCGCCGAATCGAAGCAATGACTTCCACAGTGCGAGTTTCCTTCGCCACGCGCCCTCGTTGCAGCGAGAAAACACGTCTCCCAGTTAGGGGGCGAGCGGCCGAGCGAAGGTGCGGGTCTCAGCGCCATGTACGCGTGAATCTGAGCTGGCGCAGTAGGTAACTCCTCCATGTAGAAGAACTGTGAAGGGCCATAGATCCGATCAACAAATCATCCAAACCGTACATTACACAGTACAAAAGGCTACTATACCAAGTAAATCTTCCTTTTTACCATTAGAGAGAGATACACTGTGTGGCAGTATGACTGTGTGTGACACTCTTGAGTGTGGTCGTACTATAAAACCATGAATCCATCTCAGATTCTCAGGTTTGCAAGCCTAGGGTAGACCATCGACCAAATCCAATGGCTGCTTGGCTCGCCTCGCTGACCATCTCCTTCTTCCTCTTCTTCCTCCATGGCGCCATGGCCATGTCCACCGCCGCGCAGCTCGCCGGGGAGGCGCCGCCGGCGTAGCTGCCAAGGTCAGAACTGGCTGCCATCTGTAGGGTGATGGCTGACCTCCTCGGCGACCCGACGTGGCCGCAGCTCCACCGGCGTCCCTGCACGGACACGCCATGGCCGGGACTCCAGTGCGAGCTCGCCCCCGACGACGCCCGCCACCTGCGCGCCACCAGGCTCCACTTCGGCCCCGACGTCGCCACCCCGCCGTGCAGGCCCGGCGCCAGGCTCGCCGCGCCCGTGCTCCTGGGACTCCCCCACCTCAAGACGCTCTCCCTCTTCGGCTGCTTCGTCGTCGCCGACTGTTAGAAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATATGCATGTGTGTATTGCATGGCCTGGAGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGGCAGTGAGTAGTGAGCCAATAAAAAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTAGTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTATGAGTAGGATGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGGTGGTGCAAGCAACGACGTCGGCGAGGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGGCGTGGGCGTCGTGTGTGGCTCGAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTGTTATAAATAGCTGCTCATTGTAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTT] consensusID : consensus_868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1256 fasta sequence [CGTCCTCCCTCTCTCTCTCCCCCCTCATCCCTCTCTTTCTCACCCCCTTTCTCCTCCCCTTTGGAGGAACACAACGAGTAGGGACCCAGCCGCCGGCGGCGGCGGGCAGGGGCCGGGGCGGCGCCGGAGCTGCGGAGGAGGAGGAGGATGGACTGGTCGAACCTTGGCGGGGAGGGGCCGGTCTCTCATCGCCGAGCGCGTGGCGGGCTTCCTTCCTCGGCGGCAGTGGCGGCGGAGCGTGCGGAGGAGGATGGATTGGTCGAACCGCTTCCTTCCCCGGCAGTAGCGCAGAGTAGCGACGCCGTTTGCCGCCCGCCGACCCCGCCCGAGATGCTGTGGTGGGAAAGGAGTGTATGGAGGCGGAGTAATGTTCGCGGCGGATGAGGAGCTCGAGCTCCGCGACGTAGAGGGGCGCCGCCGCCACAGCTGGGGACGCGCGGTGCAGAGCGCTACGGAGTCCGGGAGGGACCGACGGGCGGGAGGATGCGATCAAGCTCGTCGTCCTCGCCGGAGGGGGCCATCTCATCGGGTGAAGCCTCGTCGCAGAAGTTGCCGGCAGACCCCGTCGTCGTCGTCATTTATGGAGGCATCCAACGAAGCTCACGGCTATCGCCGCCACTCCCGCCTCTGCCGCCGCTGGTTCCCGCCGCATGCCGGGAGAGACAGACCCACATGTCGCGCGCGCCGACGGCTCCCTTGTTAGAAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATACGCATGTGTGTATTGCATGGCCTGGCGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGGCAGGGAGTAGTGAGCCAATAAAGAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTAGTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTAGGAGTAGGAAGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGTTGGTGCAAGCAACGACGTCGGCGAGGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGACGTGGGCGTCGTGTGTGGCTCGAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTGCTCATTGTAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTTTTGGTGCCGCAAAGATCCTGTGTGTTCGCTTCTGTGTTTGTGTTTCTTCCTCGCTGCCTCGTTCAGAAAGTGTAGCTTGTATTCGCGTGAGTTGCTTT] [+] EMBL AK109155 [CGTCCTCCCTCTCTCTCTCCCCCCTCATCCCTCTCTTTCTCACCCCCTTTCTCCTCCCCTTTGGAGGAACACAACGAGTAGGGACCCAGCCGCCGGCGGCGGCGGGCAGGGGCCGGGGCGGCGCCGGAGCTGCGGAGGAGGAGGAGGATGGACTGGTCGAACCTTGGCGGGGAGGGGCCGGTCTCTCATCGCCGAGCGCGTGGCGGGCTTCCTTCCTCGGCGGCAGTGGCGGCGGAGCGTGCGGAGGAGGATGGATTGGTCGAACCGCTTCCTTCCCCGGCAGTAGCGCAGAGTAGCGACGCCGTTTGCCGCCCGCCGACCCCGCCCGAGATGCTGTGGTGGGAAAGGAGTGTATGGAGGCGGAGTAATGTTCGCGGCGGATGAGGAGCTCGAGCTCCGCGACGTAGAGGGGCGCCGCCGCCACAGCTGGGGACGCGCGGTGCAGAGCGCTACGGAGTCCGGGAGGGACCGACGGGCGGGAGGATGCGATCAAGCTCGTCGTCCTCGCCGGAGGGGGCCATCTCATCGGGTGAAGCCTCGTCGCAGAAGTTGCCGGCAGACCCCGTCGTCGTCGTCATTTATGGAGGCATCCAACGAAGCTCACGGCTATCGCCGCCACTCCCGCCTCTGCCGCCGCTGGTTCCCGCCGCATGCCGGGAGAGACAGACCCACATGTCGCGCGCGCCGACGGCTCCCTTGTTAGAAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATACGCATGTGTGTATTGCATGGCCTGGCGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGGCAGGGAGTAGTGAGCCAATAAAGAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTAGTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTAGGAGTAGGAAGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGTTGGTGCAAGCAACGACGTCGGCGAGGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGACGTGGGCGTCGTGTGTGGCTCGAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTGCTCATTGTAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTTTTGGTGCCGCAAAGATCCTGTGTGTTCGCTTCTGTGTTTGTGTTTCTTCCTCGCTGCCTCGTTCAGAAAGTGTAGCTTGTATTCGCGTGAGTTGCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_868#0 CTCCTCTCCTCCTTGTCCGTCTCGATCTAGTCGGATCCGGAGCGGCGGTGTTTGAGGAGG 60 consensus_868#1 ------------------------------------------------------------ consensus_868#0 CCGAGGCGGCGGCGTGGATCCAGAGCGGTGATGGCGAGGAGGCCGAGGCGGCGGCGTGGA 120 consensus_868#1 ------------------------------------------------------------ consensus_868#0 TCCGGAGCGGCGACGGTCGAGGAGGCCGAGGCGGATTGATCTCTCTTCTCCTCCCTTGCC 180 consensus_868#1 ------------------------------------------------------------ consensus_868#0 GGCTCCCCTCTCACCTCACCTCTCTGGACGAGCGGCGGCGAAGGTGGAGAAAGAGGAGGC 240 consensus_868#1 ------------------------------------------------------------ consensus_868#0 GAAGGTGGAGAAAGAGGAGGAGGCGAGGTCGCGCCGAATCGAAGCAATGACTTCCACAGT 300 consensus_868#1 ------------------------------------------------------CGTCCT 6 * * consensus_868#0 GCGAGTTTCCTTCGCCACGCGCCCTCGTTGCAGCGAGAAAACACGTCTCCCAGTTAGGGG 360 consensus_868#1 CCCTCTCTCTCTCCCCCCTCATCCCTCTCTTTCTCACCCCCTTTCTCCTCCCCTTTGGAG 66 * * ** ** ** * * ** * * ** ** ** ** * consensus_868#0 GCGAGCGGCCGAGCGAAGGTGCGGGTCTCAGCGCCATGTACGCGTGAATCTGAGCTGGCG 420 consensus_868#1 GAACACAAC-GAGTAGGGACCCAGCCGCCGGCGGCG-GCGGGCAGGGGCCGGGGC-GGCG 123 * * * *** * * * * *** * * ** * * * ** **** consensus_868#0 CAGTAGGTAACTCCTCCATGTAGAAGAACTGTGAAGGGCCA-TAGATCCGATCAACAAAT 479 consensus_868#1 CCGGAG---------CTGCGGAGGAGGAGGAGGATGGACTGGTCGAACC--TTGGCGGG- 171 * * ** * * ** ** * ** ** * * ** ** * * consensus_868#0 CATCCAAACCGTACATTACACAGTACAAAAGGCTACTATACCAAGTAAATCTTCCTTTTT 539 consensus_868#1 -----GAGGGGCCGGTCTCTCATCGCCGAGCGC----GTGGCGGGCTT-CCTTCCTCGGC 221 * * * * ** * * ** * * * ****** consensus_868#0 ACCATTAGAGAGAGATACACTGTGTGGCAGTATG-ACTGTGTGTGACACTCTTGAGTGTG 598 consensus_868#1 GGCAGTGGCGGCGGA-GCG-TGCGGAGGAGGATGGATTGGTCGAACCGCTTCCTTCCCCG 279 ** * * * ** * ** * * ** *** * ** * * ** * consensus_868#0 GTCGTACTATAAAACCATGAATCCATCTCAGATTCTCAGGTTTGCAAGCCTAGGGTAGAC 658 consensus_868#1 GCAGTAGCGCAGAGTAGCGACGCCGTTTGCCGCCCGCCGACCCC---GCCCGAGATG--C 334 * *** * * ** ** * * * * * *** * * * consensus_868#0 CATCGACCAAATCCAATGGCTGCTTGGCTCGCCTCGCTGACCATCTCCTTCTTCCTCTTC 718 consensus_868#1 TGTGGTGGGAAAGGAGTGTATG---GAGGCGGAGTAATGTTCGCGGCGGATGAGGAGCTC 391 * * ** * ** ** * ** ** * * ** consensus_868#0 TTCCTCCATGGCGCCATGGCCATGTCCACCGCCGCGCAGCTCGCCGGGGAGGCGCCGCCG 778 consensus_868#1 GAGCTCCGCGACGTAGAGG--GGCGCCGCCGCCACA------GCTGGGGACGCGCGGTGC 443 **** * ** ** ** ***** * ** ***** **** * consensus_868#0 GCGTAGCTGCCAAGGTCAGAACTGGCTGCCATCTGTAGGGTGATGGCTGACCTCCTCGGC 838 consensus_868#1 AGAGCGCTACGGAGTCCGGGAGGGACCGACGGGCGGGAGGATGCGATCAAGCTCGTCGTC 503 *** * ** * * * * * * * * ** * * *** *** * consensus_868#0 GACCCGACGTGGCCGCAGCTCCACCGGCGTCCCTGCACGGACACGCCATGGCCGGGACTC 898 consensus_868#1 CTCGCCG-GAGGGGGCCATCTCATCGG-GT---------GAAGCCTCGTCGCAGAAGTTG 552 * * * ** ** ** *** ** ** * * * ** * * consensus_868#0 CAGTGCGAGCTCGCCCCCGACGACGCCCGCCACCTGCGCGCCACCAGGCTCCACTTCGGC 958 consensus_868#1 CCGGCAGACCCCGTCGTCGTCGTCATTTATGGAG-GCATCCAACGAAGCTCA----CGGC 607 * * ** * ** * ** ** * ** * ** * **** **** consensus_868#0 CCCGACGTCGCCACCCCGCCGTGCAGGCCCGGCGCCAGGCTCGCCGCGCCCGTGCTCCTG 1018 consensus_868#1 --TATCGCCGCCACTCCCGCCT------CTGCCGCC--GCTGGTTCCCGCCGCATGCCGG 657 ** ****** ** * * * * **** *** * * *** ** * consensus_868#0 GGACTCCCCCACCTCAAGACGCTCTCCCTCTTCGGCTGCTTCGTCGTCGCCGACTGTTAG 1078 consensus_868#1 GAG-------------AGACAGACCCACATGTCGCGCGCGCCGACGGCTCCC-TTGTTAG 703 * **** * * * *** ** ** ** * ** ****** consensus_868#0 AAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATATGCATGTGTGTATTGCA 1138 consensus_868#1 AAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATACGCATGTGTGTATTGCA 763 ******************************************* **************** consensus_868#0 TGGCCTGGAGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGG 1198 consensus_868#1 TGGCCTGGCGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGG 823 ******** *************************************************** consensus_868#0 CAGTGAGTAGTGAGCCAATAAAAAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTA 1258 consensus_868#1 CAGGGAGTAGTGAGCCAATAAAGAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTA 883 *** ****************** ************************************* consensus_868#0 GTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTATGAGTAG 1318 consensus_868#1 GTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTAGGAGTAG 943 ***************************************************** ****** consensus_868#0 GATGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGGTGGTGCAAGCAACGACGTCGGCGA 1378 consensus_868#1 GAAGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGTTGGTGCAAGCAACGACGTCGGCGA 1003 ** ******************************** ************************ consensus_868#0 GGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGGCGTGGGCGTCGTGTGTGGCTC 1438 consensus_868#1 GGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGACGTGGGCGTCGTGTGTGGCTC 1063 ************************************** ********************* consensus_868#0 GAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTGTTATAAATAGCTGCTCATTG 1498 consensus_868#1 GAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTG-------------CTCATTG 1110 **************************************** ******* consensus_868#0 TAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTT------------ 1546 consensus_868#1 TAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTTTTGGTGCCGCAA 1170 ************************************************ consensus_868#0 ------------------------------------------------------------ consensus_868#1 AGATCCTGTGTGTTCGCTTCTGTGTTTGTGTTTCTTCCTCGCTGCCTCGTTCAGAAAGTG 1230 consensus_868#0 -------------------------- consensus_868#1 TAGCTTGTATTCGCGTGAGTTGCTTT 1256 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||