These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1362 fasta sequence [CAATAATAGCCCACACAACCCTAGGCTGCGCTAGTGTCGTCGGTCCCCATCCCATTCGGCCACCGATCCCAATCTCAATCTGACGCCGCCGCCGGCATCCCTGACTCACCGACGCGGCTGCACCAGGCGCCGCCGCCGCCGCCTCCGCCTTGATCGTAAGGAAGTAAGTTT-GGAGCACCATGGCTCTGCGATCGGCGGCCGGTAGGCTGGCGTCGTCCAGCCGCCGCCGCCTCCTCTCTCCGCCCACCAGCATCCACACAGCCTTCCTCCACTCCCACGCCACCAGCTTCGGATACAAGCAAGTAGCTGAAGAGGACAAAAGCAAATTGGTCGGTAACGTCTTCAGCAGCGTCGCCTCCAGTTACGATCTCATGAACGATCTTATGAGCGTTGGACTACATAGGTTGTGGAAGGACAGGCTCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAGGGGATGTTGCCTTCCGTGCGCTCGAGAGAATCAATAGCGTGAGCCATAGAGCTATGCAGGGTACTCTTACTGATATTGAAGAAGAAACACAAATCTATGTTTGTGACATTAATCCAAATATGCTGAATGTTGGAAAGAAACGTGCTTCAGAAAGAGGATACAAAGAAGGCCATTGCCTTAGCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATACTATTGCGTTTGGGATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATAGAGTCCTAAAGCGAGGGGGAAGGTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGCTTTTTAAAGAGATTTATGATGTTTATTCATTTTCTGTGATTCCGGCTGTGGGAGAACTAGTGGCCGGTGATCGCCAGTCATACCAATACTTGGTTGAGAGTATCCGCCGGTTTCCAAATCAGGAAAAGTTTGCTCAGATGATCCAAGAAGCCGGATTTGAGAGGGTAGAATACGAAAATCTGGTGGGTGGTGTGGTTGCCATTCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCAAGTTTGATGGATACTTTACTGTTACTCCTACGGCAACGGCAAGGTCTTGTGAAGCGGGCGTTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCAATAAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTT-AGATGAAAGGCTTTTGACAGCCCAGCTTTACTGAAAAGCATAAAATGTT-GTTTTGACAACCAAAACAAACAACTAAAAGGGAGTCACACTAGATTGACAGAAAAGTTAAAAAA] [+] EMBL AK072971 [CAATAATAGCCCACACAACCCTAGGCTGCGCTAGTGTCGTCGGTCCCCATCCCATTCGGCCACCGATCCCAATCTCAATCTGACGCCGCCGCCGGCATCCCTGACTCACCGACGCGGCTGCACCAGGCGCCGCCGCCGCCGCCTCCGCCTTGATCGTAAGGAAGTAAGTTT GGAGCACCATGGCTCTGCGATCGGCGGCCGGTAGGCTGGCGTCGTCCAGCCGCCGCCGCCTCCTCTCTCCGCCCACCAGCATCCACACAGCCTTCCTCCACTCCCACGCCACCAGCTTCGGATACAAGCAAGTAGCTGAAGAGGACAAAAGCAAATTGGTCGGTAACGTCTTCAGCAGCGTCGCCTCCAGTTACGATCTCATGAACGATCTTATGAGCGTTGGACTACATAGGTTGTGGAAGGACAGGCTCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAGGGGATGTTGCCTTCCGTGCGCTCGAGAGAATCAATAGCGTGAGCCATAGAGCTATGCAGGGTACTCTTACTGATATTGAAGAAGAAACACAAATCTATGTTTGTGACATTAATCCAAATATGCTGAATGTTGGAAAGAAACGTGCTTCAGAAAGAGGATACAAAGAAGGCCATTGCCTTAGCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATACTATTGCGTTTGGGATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATAGAGTCCTAAAGCGAGGGGGAAGGTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGCTTTTTAAAGAGATTTATGATGTTTATTCATTTTCTGTGATTCCGGCTGTGGGAGAACTAGTGGCCGGTGATCGCCAGTCATACCAATACTTGGTTGAGAGTATCCGCCGGTTTCCAAATCAGGAAAAGTTTGCTCAGATGATCCAAGAAGCCGGTTTCGAGAGGGTAGAATACGAAAATCTGGTGGGTGGTGTGGTTGCCATTCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCAAGTTTGATGGATACTTTACTGTTACTCCTACGGCAACGGCAAGGTCTTGTGAAGCGGGCGTTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCAATAAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTT AGATGAAAGGCTTTTGACAGCCCAGCTTTACTGAAAAGCATAAAATGTT GTTTTGACAACCAAAACAAACAACTAAAAGGGAGTCACA ] [+] EMBL CB678719 [ AATCTGACGCCGCCGCCGGCATCCCTGACTCACCGACGCGGCTGCACCAGGCGCCGCCGCCGCCGCCTCCGCCTTGATCGTAAGGAAGTAAGTTTAGGAGCACCATGGCTCTGCGATCGGCGGCCGGTAGGCTGGCGTCGTCCAGCCGCCGCCGCCTCCTCTCTCCGCCCACCAGCATCCACACGGCCTTCCTCCACTCCCACGCCACCAGCTTCGGATACAAGCAAGTAGCTGAAGAGGACAAAAGCAAATTGGTCGGTAACGTCTTCAGCAGCGTCGCCTCCAGTTACGATCTCATGAACGATCTTATGAGCGTTGGACTACATAGGTTGTGGAAGGACAGGCTCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAGGGGATGTTGCCTTCCGTGCGCTCGAGAGAATCAATAGCGTGAGCCATAGAGCTATGCAGGGTACTCTTACTGATATTGAAGAAGAAACACAAATCTATGTTTGTGACATTAATCCAAATATGCTGAATGTTGGAAAGAAACGTGCTTCAGAAAGAGGATACAAAGAAGGCCATTGCCTTAGCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATACTATTGCGTTTGGGATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATAGAGTCCTAAAGCGAGGGGGAAAGTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGCTTTTTAAga ] [-] EMBL CB678720 [ ATATGCTGAATGTTGGAAAGAAACGTGTTTCAGAAAGAGGATACAAAGAAGGCCATTGCCTTAGCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATACTATTGCGTTTGGGATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATAGAGTCCTAAAGCGAGGGGGAAGGTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGCTTTTTAAAGAGATTTATGATGTTTATTCATTTTCTGTGATTCCGGCTGTGGGAGAACTAGTGGCCGGTGATCGCCAGTCATACCAATACTTGGTTGAGAGTATCCGCCGGTTTCCAAATCAGGAAAAGTTTGCTCAGATGATCCAAGAAGCCGGATTTGAGAGGGTAGAATACGAAAATCTGGTGGGTGGTGTGGTTGCCATTCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCAAGTTTGATGGATACTTTACTGTTACTCCTACGGCAACGGCAAGGTCTTGTGAAGCGGGCGTTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCAATAAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTT AGATGAAAGGCTTTTGACAGCCCAGCTTTACTGAAAAGCATAAAATGTT GTTTTGACAACCAAAACAAACAACTAAAAGGGGGTCACACTAGATTGACAGAAAAGTTAAAAAA] [+] EMBL AU030970 [ AGTTTGCTCAGATGATCCAAGAAGCCGGATTTGAGAGGGTAGAATACGAAAATCTGGTGGGTGGTGTGGTTGCCATTCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCAAGTTTGATGGATACTTTACTGTTACNCCTACGGCAACGGCAAGGTCTTGTGAAGCGGGCGTTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCAATAAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTTAAGATGAAAGGCTTTTGACAGCCCAGCTTTACTGGAAAGCATTAAATGTTGGTTTGGCCANCCAAACCAACCAc ] consensusID : consensus_8680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [TACATGTTTCTTGTATTTATTTTTTTTAGATGAAAGGCTTTTGACAGCCCNGCTTTNNTGAAAAGNATNAAATGTTGTTTTGACANCCAAAACAAACAACTAAAAGGNTGTNACNCTTGNTTGACNGANAAGTTNCNGNNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU095179 [TACATGTTTCTTGTATTTATTTTTTTTAGATGAAAGGCTTTTGACAGCCCNGCTTTNNTGAAAAGNATNAAATGTTGTTTTGACANCCAAAACAAACAACTAAAAGGNTGTNACNCTTGNTTGACNGANAAGTTNCNGNNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8680#0 CAATAATAGCCCACACAACCCTAGGCTGCGCTAGTGTCGTCGGTCCCCATCCCATTCGGC 60 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 CACCGATCCCAATCTCAATCTGACGCCGCCGCCGGCATCCCTGACTCACCGACGCGGCTG 120 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 CACCAGGCGCCGCCGCCGCCGCCTCCGCCTTGATCGTAAGGAAGTAAGTTTGGAGCACCA 180 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 TGGCTCTGCGATCGGCGGCCGGTAGGCTGGCGTCGTCCAGCCGCCGCCGCCTCCTCTCTC 240 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 CGCCCACCAGCATCCACACAGCCTTCCTCCACTCCCACGCCACCAGCTTCGGATACAAGC 300 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 AAGTAGCTGAAGAGGACAAAAGCAAATTGGTCGGTAACGTCTTCAGCAGCGTCGCCTCCA 360 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 GTTACGATCTCATGAACGATCTTATGAGCGTTGGACTACATAGGTTGTGGAAGGACAGGC 420 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 TCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAG 480 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 GGGATGTTGCCTTCCGTGCGCTCGAGAGAATCAATAGCGTGAGCCATAGAGCTATGCAGG 540 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 GTACTCTTACTGATATTGAAGAAGAAACACAAATCTATGTTTGTGACATTAATCCAAATA 600 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 TGCTGAATGTTGGAAAGAAACGTGCTTCAGAAAGAGGATACAAAGAAGGCCATTGCCTTA 660 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 GCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATA 720 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 CTATTGCGTTTGGGATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATA 780 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 GAGTCCTAAAGCGAGGGGGAAGGTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGC 840 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 TTTTTAAAGAGATTTATGATGTTTATTCATTTTCTGTGATTCCGGCTGTGGGAGAACTAG 900 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 TGGCCGGTGATCGCCAGTCATACCAATACTTGGTTGAGAGTATCCGCCGGTTTCCAAATC 960 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 AGGAAAAGTTTGCTCAGATGATCCAAGAAGCCGGATTTGAGAGGGTAGAATACGAAAATC 1020 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 TGGTGGGTGGTGTGGTTGCCATTCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCA 1080 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 AGTTTGATGGATACTTTACTGTTACTCCTACGGCAACGGCAAGGTCTTGTGAAGCGGGCG 1140 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 TTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCA 1200 consensus_8680#1 ------------------------------------------------------------ consensus_8680#0 ATAAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTTAGATGAAAGGC 1260 consensus_8680#1 ----------------------TACATGTTTCTTGTATTTATTTTTTTTAGATGAAAGGC 38 ************************************** consensus_8680#0 TTTTGACAGCCCAGCTTTACTGAAAAGCATAAAATGTTGTTTTGACAACCAAAACAAACA 1320 consensus_8680#1 TTTTGACAGCCCNGCTTTNNTGAAAAGNATNAAATGTTGTTTTGACANCCAAAACAAACA 98 ************ ***** ******* ** **************** ************ consensus_8680#0 ACTAAAAGGGAGTCACACTAGATTGACAGAAAAGTTAAAAAA------------------ 1362 consensus_8680#1 ACTAAAAGGNTGTNACNCTTGNTTGACNGANAAGTTNCNGNNTAAAAAAAAAAAAAAAAA 158 ********* ** ** ** * ***** ** ***** consensus_8680#0 -------------------- consensus_8680#1 AAAAAAAAAAAAAAAAAAAA 178 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||