These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 772 fasta sequence [ATAAAGCCACCCTCTTTTCTCTTTATTAGTAACGAGAACAAGTGAAGAACACACCTTCTGATTCTTTCCCTCTGATCTATATATTT-CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC-TTGCTCTTAAGCCACACAGATGCAATGCTGTTGTCTGAATCTTGGAATTCTGGGGTGCTTGATGACTTCCTCACAGCTTGCAATCCATCACCATATGAAGGCACTGCGGTTGCTACAAGATCTTGCTGGCTGTTGTTTATTTCCGGTCGACTGCCAGATTTTGGCCTCAGCGCCAAGCCCGGGCCGGCCTTCATC] [+] EMBL CB685555 [ATAAAGCCACCCTCTTTTCTCTTTATTAGTAACGAGAACAAGTGAAGAACACACCTTCTGATTCTTTCCCTCTGATCTATATATTT CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC TTGCTCTTAAGCCACACAGATGCAATGCTGTTGTCTGAATCTTGGAATTCTGGGGTGCTTGATGACTTCCTCACAGCTTGCAATCCATCACCATATGAAGGCACTGCGGTTGCTACAAGATCTTGCTGGCTGTTGTTTATTTCCGGTCGACTGCCAGATTTTGGCCTCAGCGCCAAGCCCGGGCCGGCCTTCATC] [+] EMBL CB967391 [ ATCTATATATTT CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC TTGCTCTTAAGCCACACAGATGCAATGCTGTTGT ] [+] EMBL CB966114 [ CTATATATTT CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGACTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCCGGTTTAAAGTTCCACTTTGATCTTAAGACAAACAGATGCAATGCTCGAGTCTGAATCTTGGAATa ] [+] EMBL BI306204 [ CTATATATTTCCCTATGTGCAGTTCTGCTTTGGGTACAAAAAAATAAGCTCCAATAACCCCCAAAGGGGCTTTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAAATTTAGTACACTGTAATATGTATTTTGAACTCTAGGGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAAATCTAAAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAAAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAAAACAACCCTTACTTGCAAAGCACATAACCAAAATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCAAAAATAGGCTTTGGAATGCTGTCGAAAACCAGGATTGGGAAAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC TTGCTCTTAAGCCACACAAATGCAATGCTGTTG ] consensusID : consensus_8681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [TTTTTTTCTTTTTTTTTTGAAGAACACACATTGCTGATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGCTATAGATCTAGAAGGGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAACGCCACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAAACCTTACATGCAGAGTACATAACCAAGACGCGCATCTTACTACCGCCTGGTCCGCTTGCCCCTCCCAGCCCGCACTTTCTTCGGAAAGGGGGCGAAAATAGGTTGTGCAACGCCACCGCTCAACCAGATCGTCACACCGCACCACACACGCGTTCCCTTTAGCCGTCCCGTCCGCTCGCCTTTTCCCTCCCCGTGTGCTTGCGTCTGCGTTCACGCCCTCCCGCGCAGCCCATGCCCGTCCCCCCCGTCCCGTTCCGGTCGCGGGC] [+] EMBL CA761589 [TTTTTTTCTTTTTTTTTTGAAGAACACACATTGCTGATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGCTATAGATCTAGAAGGGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAACGCCACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAAACCTTACATGCAGAGTACATAACCAAGACGCGCATCTTACTACCGCCTGGTCCGCTTGCCCCTCCCAGCCCGCACTTTCTTCGGAAAGGGGGCGAAAATAGGTTGTGCAACGCCACCGCTCAACCAGATCGTCACACCGCACCACACACGCGTTCCCTTTAGCCGTCCCGTCCGCTCGCCTTTTCCCTCCCCGTGTGCTTGCGTCTGCGTTCACGCCCTCCCGCGCAGCCCATGCCCGTCCCCCCCGTCCCGTTCCGGTCGCGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8681#0 ATAAAGCCACCCTCTTTTCTCTTTATTAGTAACGAGAACAAGTGAAGAACACACCTT-CT 59 consensus_8681#1 -------------TTTTTTTCTTTTTTTTT------------TGAAGAACACACATTGCT 35 **** ***** ** * ************ ** ** consensus_8681#0 GATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAA 119 consensus_8681#1 GATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAA 95 ************************************************************ consensus_8681#0 TAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGG 179 consensus_8681#1 TAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGG 155 ************************************************************ consensus_8681#0 AAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAAC 239 consensus_8681#1 AAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAAC 215 ************************************************************ consensus_8681#0 TCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAG 299 consensus_8681#1 TCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGCTATAGATCTAG 275 ************************************************ *********** consensus_8681#0 AAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAG 359 consensus_8681#1 AAGGGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAG 335 *** ******************************************************** consensus_8681#0 AAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGC 419 consensus_8681#1 AAATAACGCCACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAAACCTTACATGC 395 ****** * *************************************** ********** consensus_8681#0 AAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAG 479 consensus_8681#1 AGAGTACATAACCAAGACGCGCATCTTACTACCGCCTGGTCCGCTTGCCCCTCCCAGCCC 455 * ** ************ ** * ******* ***** **** **** *** consensus_8681#0 CAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTG 539 consensus_8681#1 GCACTTTCTTCGGAAAGGGGGCGAAAATAGGTTGTGCAACGCCACCGCTCAACCAGATCG 515 * ** *********** * ********** * ** ** ** ** * * *** * consensus_8681#0 GGAGAGGG-AGGGTGAATGCATCTGGTTTTAA-GTTCCACTTGCTCTTAAGCCACACAGA 597 consensus_8681#1 TCACACCGCACCACACACGCGTTCCCTTTAGCCGTCCCGTCCGCTCGCCTTTTCCCTCCC 575 * * * * * ** * *** ** ** **** * consensus_8681#0 TGCAATGCTGTTGTCTGAATCTTGGAATTCTGGGGTGCTTGATGACTTCCTCACAGCTTG 657 consensus_8681#1 CGTG-TGCTTGCGTCTGCGTTCACGCCCTCCCGCGCAGCCCATGCCCGTCCCCCCCGTCC 634 * **** ***** * * ** * * *** * * * * * consensus_8681#0 CAATCCATCACCATATGAAGGCACTGCGGTTGCTACAAGATCTTGCTGGCTGTTGTTTAT 717 consensus_8681#1 CGTTCCGGTCGCGGGC-------------------------------------------- 650 * *** * consensus_8681#0 TTCCGGTCGACTGCCAGATTTTGGCCTCAGCGCCAAGCCCGGGCCGGCCTTCATC 772 consensus_8681#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||