Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8681 cluster # 8681       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8681#0 length = 772 sequences # 4  
consensus_8681#1 length = 650 sequences # 1  

consensusID : consensus_8681#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 772
fasta sequence
                              [ATAAAGCCACCCTCTTTTCTCTTTATTAGTAACGAGAACAAGTGAAGAACACACCTTCTGATTCTTTCCCTCTGATCTATATATTT-CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC-TTGCTCTTAAGCCACACAGATGCAATGCTGTTGTCTGAATCTTGGAATTCTGGGGTGCTTGATGACTTCCTCACAGCTTGCAATCCATCACCATATGAAGGCACTGCGGTTGCTACAAGATCTTGCTGGCTGTTGTTTATTTCCGGTCGACTGCCAGATTTTGGCCTCAGCGCCAAGCCCGGGCCGGCCTTCATC]

[+] EMBL CB685555             [ATAAAGCCACCCTCTTTTCTCTTTATTAGTAACGAGAACAAGTGAAGAACACACCTTCTGATTCTTTCCCTCTGATCTATATATTT CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC TTGCTCTTAAGCCACACAGATGCAATGCTGTTGTCTGAATCTTGGAATTCTGGGGTGCTTGATGACTTCCTCACAGCTTGCAATCCATCACCATATGAAGGCACTGCGGTTGCTACAAGATCTTGCTGGCTGTTGTTTATTTCCGGTCGACTGCCAGATTTTGGCCTCAGCGCCAAGCCCGGGCCGGCCTTCATC]
[+] EMBL CB967391             [                                                                          ATCTATATATTT CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC TTGCTCTTAAGCCACACAGATGCAATGCTGTTGT                                                                                                                                                                 ]
[+] EMBL CB966114             [                                                                            CTATATATTT CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGACTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCCGGTTTAAAGTTCCACTTTGATCTTAAGACAAACAGATGCAATGCTCGAGTCTGAATCTTGGAATa                                                                                                                                                  ]
[+] EMBL BI306204             [                                                                            CTATATATTTCCCTATGTGCAGTTCTGCTTTGGGTACAAAAAAATAAGCTCCAATAACCCCCAAAGGGGCTTTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAAATTTAGTACACTGTAATATGTATTTTGAACTCTAGGGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAAATCTAAAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAAAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAAAACAACCCTTACTTGCAAAGCACATAACCAAAATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCAAAAATAGGCTTTGGAATGCTGTCGAAAACCAGGATTGGGAAAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC TTGCTCTTAAGCCACACAAATGCAATGCTGTTG                                                                                                                                                                  ]


>consensus_8681#0 ATAAAGCCACCCTCTTTTCTCTTTATTAGTAACGAGAACAAGTGAAGAACACACCTTCTG ATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAAT AAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGA AAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACT CTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGA AGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGA AATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCA AAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGC AATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGG GAGAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCACTTGCTCTTAAGCCACACAGATGC AATGCTGTTGTCTGAATCTTGGAATTCTGGGGTGCTTGATGACTTCCTCACAGCTTGCAA TCCATCACCATATGAAGGCACTGCGGTTGCTACAAGATCTTGCTGGCTGTTGTTTATTTC CGGTCGACTGCCAGATTTTGGCCTCAGCGCCAAGCCCGGGCCGGCCTTCATC



consensusID : consensus_8681#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence
                              [TTTTTTTCTTTTTTTTTTGAAGAACACACATTGCTGATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGCTATAGATCTAGAAGGGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAACGCCACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAAACCTTACATGCAGAGTACATAACCAAGACGCGCATCTTACTACCGCCTGGTCCGCTTGCCCCTCCCAGCCCGCACTTTCTTCGGAAAGGGGGCGAAAATAGGTTGTGCAACGCCACCGCTCAACCAGATCGTCACACCGCACCACACACGCGTTCCCTTTAGCCGTCCCGTCCGCTCGCCTTTTCCCTCCCCGTGTGCTTGCGTCTGCGTTCACGCCCTCCCGCGCAGCCCATGCCCGTCCCCCCCGTCCCGTTCCGGTCGCGGGC]

[+] EMBL CA761589             [TTTTTTTCTTTTTTTTTTGAAGAACACACATTGCTGATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGCTATAGATCTAGAAGGGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAACGCCACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAAACCTTACATGCAGAGTACATAACCAAGACGCGCATCTTACTACCGCCTGGTCCGCTTGCCCCTCCCAGCCCGCACTTTCTTCGGAAAGGGGGCGAAAATAGGTTGTGCAACGCCACCGCTCAACCAGATCGTCACACCGCACCACACACGCGTTCCCTTTAGCCGTCCCGTCCGCTCGCCTTTTCCCTCCCCGTGTGCTTGCGTCTGCGTTCACGCCCTCCCGCGCAGCCCATGCCCGTCCCCCCCGTCCCGTTCCGGTCGCGGGC]


>consensus_8681#1 TTTTTTTCTTTTTTTTTTGAAGAACACACATTGCTGATTCTTTCCCTCTGATCTATATAT TTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGG CATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGC AACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACA TCATTTTGCACCATCCCTGTAAGCTATAGATCTAGAAGGGTTTCTGTCTTTATAATATCC ACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAACGCCACCCCGAACTCCTCC AGGCCTATTCTGAACCAAGAACAAACCTTACATGCAGAGTACATAACCAAGACGCGCATC TTACTACCGCCTGGTCCGCTTGCCCCTCCCAGCCCGCACTTTCTTCGGAAAGGGGGCGAA AATAGGTTGTGCAACGCCACCGCTCAACCAGATCGTCACACCGCACCACACACGCGTTCC CTTTAGCCGTCCCGTCCGCTCGCCTTTTCCCTCCCCGTGTGCTTGCGTCTGCGTTCACGC CCTCCCGCGCAGCCCATGCCCGTCCCCCCCGTCCCGTTCCGGTCGCGGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8681#0      ATAAAGCCACCCTCTTTTCTCTTTATTAGTAACGAGAACAAGTGAAGAACACACCTT-CT 59
consensus_8681#1      -------------TTTTTTTCTTTTTTTTT------------TGAAGAACACACATTGCT 35
                                    **** ***** **  *            ************ ** **

consensus_8681#0      GATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAA 119
consensus_8681#1      GATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAA 95
                      ************************************************************

consensus_8681#0      TAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGG 179
consensus_8681#1      TAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGG 155
                      ************************************************************

consensus_8681#0      AAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAAC 239
consensus_8681#1      AAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAAC 215
                      ************************************************************

consensus_8681#0      TCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAG 299
consensus_8681#1      TCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGCTATAGATCTAG 275
                      ************************************************ ***********

consensus_8681#0      AAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAG 359
consensus_8681#1      AAGGGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAG 335
                      *** ********************************************************

consensus_8681#0      AAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGC 419
consensus_8681#1      AAATAACGCCACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAAACCTTACATGC 395
                      ******  * *************************************** **********

consensus_8681#0      AAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAG 479
consensus_8681#1      AGAGTACATAACCAAGACGCGCATCTTACTACCGCCTGGTCCGCTTGCCCCTCCCAGCCC 455
                      * ** ************ **  * *******   *****    ****   **** ***  

consensus_8681#0      CAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTG 539
consensus_8681#1      GCACTTTCTTCGGAAAGGGGGCGAAAATAGGTTGTGCAACGCCACCGCTCAACCAGATCG 515
                        * ** *********** * ********** * ** ** **   **   * *  *** *

consensus_8681#0      GGAGAGGG-AGGGTGAATGCATCTGGTTTTAA-GTTCCACTTGCTCTTAAGCCACACAGA 597
consensus_8681#1      TCACACCGCACCACACACGCGTTCCCTTTAGCCGTCCCGTCCGCTCGCCTTTTCCCTCCC 575
                        * *  * *      * ** *    ***    ** **    ****        *     

consensus_8681#0      TGCAATGCTGTTGTCTGAATCTTGGAATTCTGGGGTGCTTGATGACTTCCTCACAGCTTG 657
consensus_8681#1      CGTG-TGCTTGCGTCTGCGTTCACGCCCTCCCGCGCAGCCCATGCCCGTCCCCCCCGTCC 634
                       *   ****   *****  *    *   **  * *      *** *   * * *   *  

consensus_8681#0      CAATCCATCACCATATGAAGGCACTGCGGTTGCTACAAGATCTTGCTGGCTGTTGTTTAT 717
consensus_8681#1      CGTTCCGGTCGCGGGC-------------------------------------------- 650
                      *  ***     *                                                

consensus_8681#0      TTCCGGTCGACTGCCAGATTTTGGCCTCAGCGCCAAGCCCGGGCCGGCCTTCATC 772
consensus_8681#1      -------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)