These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1668 fasta sequence [AACAACCCCATCCCCAAGAAACTAAACCTCATCCCCGCCCCCACCCATGTCCGACCACCACCACCTCACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCCCCTGCTCCTCCTCCCGTCGGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGAGCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTTCCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCTCCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTCCGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGAGGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGCCAACGGCCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCGCCTCCCGCCGTCCCCGCTCGGCCCCCGCGGCACCTCCTCCTGGCGCCGCTTCGGCCTCAAGCTCGTCGCCGATCCCCCCGGGTCGAGCCAGTTTAGGTTTCTGTTCGCTGAGCTGGTGAACAACACGCCACTCCTCTTCGAGTACCAGTCCGAGACGGACACGTGGCAGTCATCGGAGGCGGTCCAGGCGGAGGGGGCGTCGACGGCGGCCGGGACGGAGGGGACGTTCCTGTGCGCGGCGCACGCCGGGCCGGACTGCGTGATGGTGTACTCCGGGCCGGGCGTGGAGCGGCCGGTCTTCTTCCGGCCGCGGTTCCCGCACAACCCGAACGGCGGCGGCGACAGGCTCCACGTGTACGGCGACGGGAGCGCCGCGGTGGTCCGGTCGACGGTGATCGACGAGCCGGGCAGGCCGCGGGTGAAGGTGGTGGCCGGCGTGGACCTGTACGGGTTCGGGTCGGTCGTCGGCGGCGACTGGCAGCTGGCCTCCACCGTGCCGGGCGAGCTGGTGGAGGGGTTCCGGAAGCCGTACGCCGTGATGACCGGGCTGCTGTCGGAGCGGGAGGGCGTGGTCCGGCTCGTCCTCATCTCCAACTGCCGTGGCGCCTGGGACATCGTGTGGCTGTCGTACGACCGCGCCCGCGGCGAGTGGTGGTGGGTGCCCGTGCCGGACTGGGGCACCAAGGGGCTCAACGTGGCCGGAATCGCCGTCTCCTCCACCTTCTCCCGCCTCTGGCCGCCGGCCGCCGCCTCGTCCTGCACCACCACCACCTCCCAGTGAACCGAACTCGCCGGCGTCTCTGCGTCACCGTGCGGCTTACGGCGAGCGGTGGGGAATTGGATTGTTAGGCCCAACGTGGCAATGGGCCCCGCACCCGTGTAAGTGGTGGGCCTCCTCCCCCGTGCCCGTGGGGCCGTCGCATAATGCGACATGATCTTGCACAATGGCTTCTCCGATGGCGACAAATCGTCGAGTGCGAGTGAGTGTGCTTCAGATAAGGAGGGGTGTACTGGCGTGCGTGCAAGCACTCTTCTCTATAGTTCTCTTTTAGTATCACTGTTCATTGTTCATAAGCCGTGTGAGTGTAGCTTTGTGTTCATCTTCTCGTAAACCAAGTAAAAAGGGCAGGCTGGTACTCTGTTCTC] [+] EMBL AK101723 [AACAACCCCATCCCCAAGAAACTAAACCTCATCCCCGCCCCCACCCATGTCCGACCACCACCACCTCACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCCCCTGCTCCTCCTCCCGTCGGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGAGCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTTCCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCTCCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTCCGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGAGGACCTCTACTTCCTGGGCGCGTCCGGCAGCTCCTTCCTCTTCGCCGCCAACGGCCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCGCCTCCCGCCGTCCCCGCTCGGCCCCCGCGGCACCTCCTCCTGGCGCCGCTTCGGCCTCAAGCTCGTCGCCGATCCCCCCGGGTCGAGCCAGTTTAGGTTTCTGTTCGCTGAGCTGGTGAACAACACGCCACTCCTCTTCGAGTACCAGTCCGAGACGGACACGTGGCAGTCATCGGAGGCGGTCCAGGCGGAGGGGGCGTCGACGGCGGCCGGGACGGAGGGGACGTTCCTGTGCGCGGCGCACGCCGGGCCGGACTGCGTGATGGTGTACTCCGGGCCGGGCGTGGAGCGGCCGGTCTTCTTCCGGCCGCGGTTCCCGCACAACCCGAACGGCGGCGGCGACAGGCTCCACGTGTACGGCGACGGGAGCGCCGCGGTGGTCCGGTCGACGGTGATCGACGAGCCGGGCAGGCCGCGGGTGAAGGTGGTGGCCGGCGTGGACCTGTACGGGTTCGGGTCGGTCGTCGGCGGCGACTGGCAGCTGGCCTCCACCGTGCCGGGCGAGCTGGTGGAGGGGTTCCGGAAGCCGTACGCCGTGATGACCGGGCTGCTGTCGGAGCGGGAGGGCGTGGTCCGGCTCGTCCTCATCTCCAACTGCCGTGGCGCCTGGGACATCGTGTGGCTGTCGTACGACCGCGCCCGCGGCGAGTGGTGGTGGGTGCCCGTGCCGGACTGGGGCACCAAGGGGCTCAACGTGGCCGGAATCGCCGTCTCCTCCACCTTCTCCCGCCTCTGGCCGCCGGCCGCCGCCTCGTCCTGCACCACCACCACCTCCCAGTGAACCGAACTCGCCGGCGTCTCTGCGTCACCGTGCGGCTTACGGCGAGCGGTGGGGAATTGGATTGTTAGGCCCAACGTGGCAATGGGCCCCGCACCCGTGTAAGTGGTGGGCCTCCTCCCCCGTGCCCGTGGGGCCGTCGCATAATGCGACATGATCTTGCACAATGGCTTCTCCGATGGCGACAAATCGTCGAGTGCGAGTGAGTGTGCTTCAGATAAGGAGGGGTGTACTGGCGTGCGTGCAAGCACTCTTCTCTATAGTTCTCTTTTAGTATCACTGTTCATTGTTCATAAGCCGTGTGAGTGTA ] [+] EMBL AU162267 [ CGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTCCGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGAGGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGCCAACGGCCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACG CGCCCGCCGCCTCCCGCCGTCCCCGCTCGGCC ] [+] EMBL CB685515 [ ggccctGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGCCAACGGCCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCGCCTCCCGCCGTCCCCGCTCGGCCCCCGCGGCACCTCCTCCTGGCGCCGCTTCGGCCTCAAGCTCGTCGCCGATCCCCCCGGGTCGAGCCAGTTTAGGTTTCTGTTCGCTGAGCTGGTGAACAACACGCCACTCCTCTTCGAGTACCAGTCCGAGACGGACACGTGGCAGTCATCGGAGGCGGTCCAGGCGGAGGGGGCGTCGACGGCGGCCGGGACGGAGGGGACGTTCCTGTGCGCGGCGCACGCCGGGCCGGACTGCGTGATGGTGTACTCCGGGCCGGGCGTGGAGCGGCCGGTCTTCTTCCGGCCGCGGTTCCCGCACAACCCGAACGGCGGCGGCGACAGGCTCCACGTGTACGGCGACGGGAGCGCCGCGGTGGTCCGGTCGACGGTGATCGACGAGCCGGGCAGGCCGCGGGTGAAGGTGGTGGCCGGCGTGGACCTGTACGGGTTCGGGTCGGTCCTCccc ] [+] EMBL AK061541 [ AGGTTTCTGTTCGCTGAGCTGGTGAACAACACGCCACTCCTCTTCGAGTACCAGTCCGAGACGGACACGTGGCAGTCATCGGAGGCGGTCCAGGCGGAGGGGGCGTCGACGGCGGCCGGGACGGAGGGGACGTTCCTGTGCGCGGCGCACGCCGGGCCGGACTGCGTGATGGTGTACTCCGGGCCGGGCGTGGAGCGGCCGGTCTTCTTCCGGCCGCGGTTCCCGCACAACCCGAACGGCGGCGGCGACAGGCTCCACGTGTACGGCGACGGGAGCGCCGCGGTGGTCCGGTCGACGGTGATCGACGAGCCGGGCAGGCCGCGGGTGAAGGTGGTGGCCGGCGTGGACCTGTACGGGTTCGGGTCGGTCGTCGGCGGCGACTGGCAGCTGGCCTCCACCGTGCCGGGCGAGCTGGTGGAGGGGTTCCGGAAGCCGTACGCCGTGATGACCGGGCTGCTGTCGGAGCGGGAGGGCGTGGTCCGGCTCGTCCTCATCTCCAACTGCCGTGGCGCCTGGGACATCGTGTGGCTGTCGTACGACCGCGCCCGCGGCGAGTGGTGGTGGGTGCCCGTGCCGGACTGGGGCACCAAGGGGCTCAACGTGGCCGGAATCGCCGTCTCCTCCACCTTCTCCCGCCTCTGGCCGCCGGCCGCCGCCTCGTCCTGCACCACCACCACCTCCCAGTGAACCGAACTCGCCGGCGTCTCTGCGTCACCGTGCGGCTTACGGCGAGCGGTGGGGAATTGGATTGTTAGGCCCAACGTGGCAATGGGCCCCGCACCCGTGTAAGTGGTGGGCCTCCTCCCCCGTGCCCGTGGGGCCGTCGCATAATGCGACATGATCTTGCACAATGGCTTCTCCGATGGCGACAAATCGTCGAGTGCGAGTGAGTGTGCTTCAGATAAGGAGGGGTGTACTGGCGTGCGTGCAAGCACTCTTCTCTATAGTTCTCTTTTAGTATCACTGTTCATTGTTCATAAGCCGTGTGAGTGTAGCTTTGTGTTCATCTTCTCGTAAACCAAGTAAAAAGGGCAGGCTGGTACTCTGTTCTC] consensusID : consensus_8683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 842 fasta sequence [CACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCCCCTGCTGCTCCTCCCGTCAGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGAGCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTTCCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCTCCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTCCGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGAGGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGTCAACGGTCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCTGCTCCCGCCGTCCCCGCTCGGCCTACGCGGACCTTCTCCTGGCGCCGTTCGGGCTCAAGCTCGTCGCGATCCCCCGGGCCAGCCAGTTAGGTTCTGGTCCTGAGCTGGGACAAACGCACTCCTTTCAATCCCGTCCAACGGACACTGGCATATCGGAGCTGCCAACCGAGGGGCTGAGGGGCCGGACCGGGACTCCTTGACGGCACGCGGCCGGACCGTAGGGTCCCGGGCGGGCGGACGGCGGATTTCGGCCGGGCGCAACCAACGAGGCGAGAGGTATCGTGGTCGAAGCCGAGGGGTGAGTTGAGACACGGCTCATATGTGGAGGGACTACGGGTGGCCGTGCGCCGCTCTCGATGCTGAGGTGATGTTAGATGACATAGACA] [+] EMBL AW155052 [CACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCCCCTGCTGCTCCTCCCGTCAGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGAGCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTTCCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCTCCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTCCGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGAGGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGTCAACGGTCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCTGCTCCCGCCGTCCCCGCTCGGCCTACGCGGACCTTCTCCTGGCGCCGTTCGGGCTCAAGCTCGTCGCGATCCCCCGGGCCAGCCAGTTAGGTTCTGGTCCTGAGCTGGGACAAACGCACTCCTTTCAATCCCGTCCAACGGACACTGGCATATCGGAGCTGCCAACCGAGGGGCTGAGGGGCCGGACCGGGACTCCTTGACGGCACGCGGCCGGACCGTAGGGTCCCGGGCGGGCGGACGGCGGATTTCGGCCGGGCGCAACCAACGAGGCGAGAGGTATCGTGGTCGAAGCCGAGGGGTGAGTTGAGACACGGCTCATATGTGGAGGGACTACGGGTGGCCGTGCGCCGCTCTCGATGCTGAGGTGATGTTAGATGACATAGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8683#0 AACAACCCCATCCCCAAGAAACTAAACCTCATCCCCGCCCCCACCCATGTCCGACCACCA 60 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 CCACCTCACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCC 120 consensus_8683#1 ------CACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCC 54 ****************************************************** consensus_8683#0 CCTGCTCCTCCTCCCGTCGGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGA 180 consensus_8683#1 CCTGCTGCTCCTCCCGTCAGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGA 114 ****** *********** ***************************************** consensus_8683#0 GCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTT 240 consensus_8683#1 GCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTT 174 ************************************************************ consensus_8683#0 CCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCT 300 consensus_8683#1 CCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCT 234 ************************************************************ consensus_8683#0 CCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTC 360 consensus_8683#1 CCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTC 294 ************************************************************ consensus_8683#0 CGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGA 420 consensus_8683#1 CGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGA 354 ************************************************************ consensus_8683#0 GGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGCCAACGGCCGCCG 480 consensus_8683#1 GGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGTCAACGGTCGCCG 414 *********************************************** ****** ***** consensus_8683#0 CGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCGCCTCCCGCCGTCCCCGCT 540 consensus_8683#1 CGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCTGCTCCCGCCGTCCCCGCT 474 ***************************************** ***************** consensus_8683#0 CGGCCCCCGCGGCACCTCCTCCTGGCGCCGCTTCGGCCTCAAGCTCGTCGCCGATCCCCC 600 consensus_8683#1 CGGCCTACGCGG-ACCTTCTCCTGGCGCCG-TTCGGGCTCAAGCTCGTCGC-GATCCCCC 531 ***** ***** **** ************ ***** ************** ******** consensus_8683#0 CGGGTCGAGCCAGTTTAGGTTTCTGTTCGCTGAGCTGGTGAACAACACGCCACTCCTCTT 660 consensus_8683#1 --GGGCCAGCCAGTTAGG--TTCTGGTC-CTGAGCTGG--GACAA-ACGC-ACTCCT-TT 581 ** * ******** * ***** ** ********* **** **** ****** ** consensus_8683#0 CGAGTACCAGTCCGAGACGGACACGTGGCAGTCATCGGAGGCGGTCCAGGCGGAGGGGGC 720 consensus_8683#1 CAAT--CCCGTCCAA--CGGACAC-TGGCA--TATCGGAGCTG---CCAACCGAGGGGCT 631 * * ** **** * ******* ***** ******* * * * ****** consensus_8683#0 GTCGACGGCGGCCGGGACGGAGGGGACGTTCCTGTGCGCGGCGCACGCCGGGCCGGACTG 780 consensus_8683#1 G-----AGGGGCCGGACCGGGA------CTCCTTGACG----GCACGC--GGCCGGACCG 674 * * ****** *** **** ** ****** ******** * consensus_8683#0 CGTGATGGTGTACTCCGGGCCGGGCGTGGAGCGGCCGGTCTTCTTCCGGCCGCGGTTCCC 840 consensus_8683#1 TAGGG--------TCCCGGGCGGGCG---GACGGC-GGATTTCGGCCGGGCGCAA----C 718 * *** ** ****** **** ** *** **** *** * consensus_8683#0 GCACAACCCGAACGGCGGCGGCGACAGGCTCCACGTGTACGGCGACGGGAGCGCCGCG-G 899 consensus_8683#1 CAACGAGGCGAGAGGTATCGTGGTCGAAGCCGAGGGGTGAGTTGAGACACGGCTCATATG 778 ** * *** ** ** * * * * * ** * ** * * * consensus_8683#0 TGGTCCGGTCGACGGTGATCGACGAGCCGGGCAGGCCGCGGGTGAAGGTGGTGGCCGGCG 959 consensus_8683#1 TGGAGGGACTACGGGTGGCCG-TGCGCCGCTCTCGATGCTGA-GGTGATGTTAGATGACA 836 *** * **** ** * **** * * ** * * * ** * * * * consensus_8683#0 TGGACCTGTACGGGTTCGGGTCGGTCGTCGGCGGCGACTGGCAGCTGGCCTCCACCGTGC 1019 consensus_8683#1 TAGACA------------------------------------------------------ 842 * *** consensus_8683#0 CGGGCGAGCTGGTGGAGGGGTTCCGGAAGCCGTACGCCGTGATGACCGGGCTGCTGTCGG 1079 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 AGCGGGAGGGCGTGGTCCGGCTCGTCCTCATCTCCAACTGCCGTGGCGCCTGGGACATCG 1139 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 TGTGGCTGTCGTACGACCGCGCCCGCGGCGAGTGGTGGTGGGTGCCCGTGCCGGACTGGG 1199 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 GCACCAAGGGGCTCAACGTGGCCGGAATCGCCGTCTCCTCCACCTTCTCCCGCCTCTGGC 1259 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 CGCCGGCCGCCGCCTCGTCCTGCACCACCACCACCTCCCAGTGAACCGAACTCGCCGGCG 1319 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 TCTCTGCGTCACCGTGCGGCTTACGGCGAGCGGTGGGGAATTGGATTGTTAGGCCCAACG 1379 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 TGGCAATGGGCCCCGCACCCGTGTAAGTGGTGGGCCTCCTCCCCCGTGCCCGTGGGGCCG 1439 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 TCGCATAATGCGACATGATCTTGCACAATGGCTTCTCCGATGGCGACAAATCGTCGAGTG 1499 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 CGAGTGAGTGTGCTTCAGATAAGGAGGGGTGTACTGGCGTGCGTGCAAGCACTCTTCTCT 1559 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 ATAGTTCTCTTTTAGTATCACTGTTCATTGTTCATAAGCCGTGTGAGTGTAGCTTTGTGT 1619 consensus_8683#1 ------------------------------------------------------------ consensus_8683#0 TCATCTTCTCGTAAACCAAGTAAAAAGGGCAGGCTGGTACTCTGTTCTC 1668 consensus_8683#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||