These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1504 fasta sequence [TTCAAGCAAAGCAAACTCAAGTAGTAGCTGATTACCAGCTCTTCTCTCTTCTCATTGAGAAGAGGGAATTAAGTTTTGATCTCTGCTTTATTGCCTGATCATCCTCTTGTTACTTG-CAAGCAAGAACAGTAGTGT-ACTGTGCCTCATTGATCTCCTCCCACCAAACTCTCTCTCTCTCTCTCATATTCCGAGCTAGCTAGTTAATCAAGATCTTGCTGCAATGGCTGGCATGTCTCTTCAGCATCCCTGGGCCTTCGCCTTTGGTCTCCTAGGCAACATCATCTCCTTCATGACCTACCTGGCCCCACTGCCGACGTTCTACAGGATCTACAAGAGCAAGTCGACGCAGGGGTTCCAGTCGGTACCCTACGTGGTGGCGCTGTTCAGCGCGATGCTGTGGATCTACTACGCGCTGCTCAAGTCCGACGAGTGCCTCCTCATCACCATCAACTCCGCTGGCTGCGTCATCGAGACCATCTACATC-GCCGTCTACCTCGTCTA-CGCCCCCAAGAAGGCCAAGATGTTCACCGCCAAGCTCCTCCTCCTCGTCAACGTCGGCGTCTTCGGCCTCATCCTCCTCCTCACCCTCCTCCTCTCCGCCGGCGACCGCCGCATCGTGGTTCTTGGTTGGGTCTGCGTTGGCTTCTCCGTCAGCGTCTTCGTCGCCCCCCTTAGCATCATCAGGCTGGTGGTGCGCACCAAGAGCGTGGAGTTCATGCCGTTCTCGCTCTCCTTCTCCCTCACCATCAGCGCCGTCGTCTGGTTCCTCTACGGCCTCCTCATCAAGGACAAATATGTCGCTCTTCCCAACGTGCTGGGCTTCTCCTTCGGCGTCATCCAGATGGGGCTGTACGCCATGTACAGGAACTCGACGCCCAAGGCCGTGCTGACCAAGGAGGTCGAGGCGGCGACGGCCACCGGCGACGACGACCACTCCGCCGCCGGCGTCAAGGAGCACGTCGTCAACATCGCCAAGCTCTCTGCCGCCGTCGACGTCGTCAAGACCCGCGAGGTGCACCCCGTCGACGTCGAGTCCCCGCCGGCAGAGGCGCCGCCTGAGGAGGACGACAAGGCCGCCGCCGCCACCGCCGCCGCCGTCGCCGGCGCCGGCGAGAAGAAGGTAGCTGCATGAGTG-CGTGCATGCGTACATGGGTCGCCGTAAGAAGG-AAGAAGGCGTGACGTGTCCAGCCCGTACGCGCGCCACGTGGCCAAGCTAGCTTCAGAGC-TAGTGAAGCTGCAGACATGCTAGCTGGCTAGCTAGCAGTGAGAGAGTGCGA-CGACTAAAAAAAAAGTAGTGATTAATTAAGGGCTTGTAATTTAATCGTTGTTTTTTTTTTTCTCTGTTTCGTTGAGATCGATATCGTTGTCACCATGCATGTATTTCGTTTTTGATTCTCAGTAATTAATTAGATGGGCTTTCTGTAATTCAACCTGTAAGGGTTCCTTCCATGATTAATTAATTAGCGTGTTAATAATTGTCCCNCCNAAAAAAAAAAAAAAAAAA] [+] EMBL AK101913 [TTCAAGCAAAGCAAACTCAAGTAGTAGCTGATTACCAGCTCTTCTCTCTTCTCATTGAGAAGAGGGAATTAAGTTTTGATCTCTGCTTTATTGCCTGATCATCCTCTTGTTACTTG CAAGCAAGAACAGTAGTGT ACTGTGCCTCATTGATCTCCTCCCACCAAACTCTCTCTCTCTCTCTCATATTCCGAGCTAGCTAGTTAATCAAGATCTTGCTGCAATGGCTGGCATGTCTCTTCAGCATCCCTGGGCCTTCGCCTTTGGTCTCCTAGGCAACATCATCTCCTTCATGACCTACCTGGCCCCACTGCCGACGTTCTACAGGATCTACAAGAGCAAGTCGACGCAGGGGTTCCAGTCGGTACCCTACGTGGTGGCGCTGTTCAGCGCGATGCTGTGGATCTACTACGCGCTGCTCAAGTCCGACGAGTGCCTCCTCATCACCATCAACTCCGCTGGCTGCGTCATCGAGACCATCTACATC GCCGTCTACCTCGTCTA CGCCCCCAAGAAGGCCAAGATGTTCACCGCCAAGCTCCTCCTCCTCGTCAACGTCGGCGTCTTCGGCCTCATCCTCCTCCTCACCCTCCTCCTCTCCGCCGGCGACCGCCGCATCGTGGTTCTTGGTTGGGTCTGCGTTGGCTTCTCCGTCAGCGTCTTCGTCGCCCCCCTTAGCATCATCAGGCTGGTGGTGCGCACCAAGAGCGTGGAGTTCATGCCGTTCTCGCTCTCCTTCTCCCTCACCATCAGCGCCGTCGTCTGGTTCCTCTACGGCCTCCTCATCAAGGACAAATATGTCGCTCTTCCCAACGTGCTGGGCTTCTCCTTCGGCGTCATCCAGATGGGGCTGTACGCCATGTACAGGAACTCGACGCCCAAGGCCGTGCTGACCAAGGAGGTCGAGGCGGCGACGGCCACCGGCGACGACGACCACTCCGCCGCCGGCGTCAAGGAGCACGTCGTCAACATCGCCAAGCTCTCTGCCGCCGTCGACGTCGTCAAGACCCGCGAGGTGCACCCCGTCGACGTCGAGTCCCCGCCGGCAGAGGCGCCGCCTGAGGAGGACGACAAGGCCGCCGCCGCCACCGCCGCCGCCGTCGCCGGCGCCGGCGAGAAGAAGGTAGCTGCATGAGTG CGTGCATGCGTACATGGGTCGCCGTAAGAAGG AAGAAGGCGTGACGTGTCCAGCCCGTACGCGCGCCACGTGGCCAAGCTAGCTTCAGAGC TAGTGAAGCTGCAGACATGCTAGCTGGCTAGCTAGCAGTGAGAGAGTGCGA CGACTAAAAAAAAAGTAGTGATTAATTAAGGGCTTGTAATTTAATCGTTGTTTTTTTTTTTCTCTGTTTCGTTGAGATCGATATCGTTGTCACCATGCATGTATTTCGTTTTTGATTCTCAGTAATTAATTAGATGGGCTTTCTGTAATTCAACCTGTAAGGGTTCCTTCCATGATTAATTAATTAGCGTGTTAATAA ] [+] EMBL OSC630 [ TTGACAAGCAAGAACAGTAGTGTNACTGTGCCTCATTGATCTCCTCCCACCAAACTCTCTCTCTCTCTCTCATATTCCGAGCTAGCTAGTTAATCAAGATCTTGCTGCAATGGCTGGCATGTCTCTTCAGCATCCCTGGGCCTTCGCCTTTGGTCTCCTAGGCAACATCATCTCCTTCATGACCTACCTGGCCCCACTGCCGACGTTCTACAGGATCTACAAGAGCAAGTCGACGCAGGGGTTCCAGTCGGTACCCTACGTGGTGGCGCTGTTCAG GGGATGCTGTGGATCTACTACGCGCTGCTCAAGTCCGACGAGTGCCTCCTCATCANCATCAACTCCGCTGGCTGCGTAATCGAGACCATCTACATCGGCCGTCTACCTCGTCTANGGCCCCAAAGAAGGCCAAGATGTTCACCGCAAAGGTCCTCn ] [+] EMBL AU182608 [ AGTGNCGTGCATGCGTACATGGGTCNCCGTAAAAAGGAAAAAAGGCGTGACGTGTCCAGCCCGTACGCGCGCCACGTGGCCAAGCTAGCTTNAGAGCNTAGTGAAGCTGCAGACATGCTAGNTGGCTAGCTAGCAGTGANAGAGTGCGACCGACTAAAAAAAAAGTAGTGATTAATTAAGGGCTTGTAATTTAATCGTTG TTTTTTTTTTCTCTGTTTCGTTGAGATCGATATCGTTGTCNCCATGCATGTATTTCGTTTTTGATTCTCAGTAATTAATTAGATGGGCTTTCTGTAATTCAACCTGTAAGGGTTCCTTCCATGATTAATTAATTAGCGTGTTAATAATTGTCCCNCCNAAAAAAAAAAAAAAAAAA] consensusID : consensus_8686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [ACTCTTCTTCAGAGCTCTCCCTTCCCTCCACAAAGGGGGTCTAGGGTTAGAGTGTGTGTGTCTGTGACAAGTTCCAAGCTAGCAACAACAAGCTCAATTCCTTGCTTGTTTGCTTCCATATTACACTACATCTCTTCCCTTCAATTACCCCCCTTTTAGCACACAAAAATGGCTGGCCTGTCCCTGCAGCATCCCTGGGCTTTTGCCTTCGGCCTCCTTGGCAACCTCATATCCTTCACGACCTATCTGGCACCAATCCCGACGTTCTACCGGATCTACAAGAGCAAGTCGACGGAGGGGTTCCAGTCGGTGCCGTACGTGGTGGCGCTCTTCAGCGCCATGCTGTGGATCTTCTACGCGCTGATCAAGTCCAACGAGGCCCTCCTCATCACCATCAACGCCGCCGGTTGCGTCATCGAGACCATCTACATCGTCATGTACCTCGCCTACGCCCCCAAGAAGGCCAAGGTGTTCACGACGAAGATCCTGCTGCTGCTGAACGTGGGGGTGTTCGGGGTGATCCTGCTGCTGACGCTGCTGCTCTCCCATGGCGAGCAGCGCGTCGTCTCCCTCGGCTGGGTCTGCGTCGCCTTCTCCGTCAGCGTCTTTGTCGCGCCGCTCAGCATCATCAAGCGAGTGATCCAGTCGAGGAGCGTGGAGTACATGCCCTTCTCCCTCTCCCTCAC] [+] EMBL CB647390 [ACTCTTCTTCAGAGCTCTCCCTTCCCTCCACAAAGGGGGTCTAGGGTTAGAGTGTGTGTGTCTGTGACAAGTTCCAAGCTAGCAACAACAAGCTCAATTCCTTGCTTGTTTGCTTCCATATTACACTACATCTCTTCCCTTCAATTACCCCCCTTTTAGCACACAAAAATGGCTGGCCTGTCCCTGCAGCATCCCTGGGCTTTTGCCTTCGGCCTCCTTGGCAACCTCATATCCTTCACGACCTATCTGGCACCAATCCCGACGTTCTACCGGATCTACAAGAGCAAGTCGACGGAGGGGTTCCAGTCGGTGCCGTACGTGGTGGCGCTCTTCAGCGCCATGCTGTGGATCTTCTACGCGCTGATCAAGTCCAACGAGGCCCTCCTCATCACCATCAACGCCGCCGGTTGCGTCATCGAGACCATCTACATCGTCATGTACCTCGCCTACGCCCCCAAGAAGGCCAAGGTGTTCACGACGAAGATCCTGCTGCTGCTGAACGTGGGGGTGTTCGGGGTGATCCTGCTGCTGACGCTGCTGCTCTCCCATGGCGAGCAGCGCGTCGTCTCCCTCGGCTGGGTCTGCGTCGCCTTCTCCGTCAGCGTCTTTGTCGCGCCGCTCAGCATCATCAAGCGAGTGATCCAGTCGAGGAGCGTGGAGTACATGCCCTTCTCCCTCTCCCTCAC] consensusID : consensus_8686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [GCCGGGCGTCAAGGACACGTCGTCTACATCGCCAAGCTTTCTGCCCCGTGGACGTCGTCAAGACCCGCCGAGGGTGCACCCCGTCGACGTCGAGTCCCCCCCGGCAGAGGCGCCCCCCCAGGAGGACGACAAGGCCGCCGCCACCGCCGCCGCCGGTAGTCCGGCCCCGGCGAGAAGAAGGTAGCGGCAATGAGTGCGTGCATGCGTACCTGGGTCCCCGTAAGAAGGAAGAAGGCGTGACGTGTCCAGCCCGTACGCGCGCCACCGTGGCCCAGCTAGCTTCAGAGCTAGTGAAGCTGCAGACATGCTAGCTGGCTAGCTACCCGTGAGAGATTGCGACGACTATAAAGAAAAAATTAGTGATTAATT] [+] EMBL BI809654 [GCCGGGCGTCAAGGACACGTCGTCTACATCGCCAAGCTTTCTGCCCCGTGGACGTCGTCAAGACCCGCCGAGGGTGCACCCCGTCGACGTCGAGTCCCCCCCGGCAGAGGCGCCCCCCCAGGAGGACGACAAGGCCGCCGCCACCGCCGCCGCCGGTAGTCCGGCCCCGGCGAGAAGAAGGTAGCGGCAATGAGTGCGTGCATGCGTACCTGGGTCCCCGTAAGAAGGAAGAAGGCGTGACGTGTCCAGCCCGTACGCGCGCCACCGTGGCCCAGCTAGCTTCAGAGCTAGTGAAGCTGCAGACATGCTAGCTGGCTAGCTACCCGTGAGAGATTGCGACGACTATAAAGAAAAAATTAGTGATTAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8686#0 TTCAAGCAAAGCAAACTCAAGTAGTAGCTGATTACCAGCTCTTCTCTCTTCTCATTGAGA 60 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 AGAGGGAATTAAGTTTTGATCTCTGCTTTATTGCCTGATCATCCTCTTGTTACTTGCAAG 120 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 CAAGAACAGTAGTGTACTGTGCCTCATTGATCTCCTCCCACCAAACTCTCTCTCTCTCTC 180 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 TCATATTCCGAGCTAGCTAGTTAATCAAGATCTTGCTGCAATGGCTGGCATGTCTCTTCA 240 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 GCATCCCTGGGCCTTCGCCTTTGGTCTCCTAGGCAACATCATCTCCTTCATGACCTACCT 300 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 GGCCCCACTGCCGACGTTCTACAGGATCTACAAGAGCAAGTCGACGCAGGGGTTCCAGTC 360 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 GGTACCCTACGTGGTGGCGCTGTTCAGCGCGATGCTGTGGATCTACTACGCGCTGCTCAA 420 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 GTCCGACGAGTGCCTCCTCATCACCATCAACTCCGCTGGCTGCGTCATCGAGACCATCTA 480 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 CATCGCCGTCTACCTCGTCTACGCCCCCAAGAAGGCCAAGATGTTCACCGCCAAGCTCCT 540 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 CCTCCTCGTCAACGTCGGCGTCTTCGGCCTCATCCTCCTCCTCACCCTCCTCCTCTCCGC 600 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 CGGCGACCGCCGCATCGTGGTTCTTGGTTGGGTCTGCGTTGGCTTCTCCGTCAGCGTCTT 660 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 CGTCGCCCCCCTTAGCATCATCAGGCTGGTGGTGCGCACCAAGAGCGTGGAGTTCATGCC 720 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 GTTCTCGCTCTCCTTCTCCCTCACCATCAGCGCCGTCGTCTGGTTCCTCTACGGCCTCCT 780 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------------------------------------------------------------ consensus_8686#0 CATCAAGGACAAATATGTCGCTCTTCCCAACGTGCTGGGCTTCTCCTTCGGCGTCATCCA 840 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 ------ACTCTTCTTCAGAGCTCTCCCTTCCCTCCACAAAGGGGGTCTAGGGTTAGAGTG 54 consensus_8686#0 GATGGGGCTGTACGCCATGTACAGGAACTCGACGCCCAAGGCCGTGCTGACCAAGGAGGT 900 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 TGTGTGTCTGTGACAAGTTCCAAGCTAGCAACAACAAGCTCAATTCCTTGCTTGTTTGCT 114 consensus_8686#0 CGAGGCGGCGACGGCCACCGGCGACGACGACCACTCCGCCGCCGGCGTCAAGGAGCACGT 960 consensus_8686#2 -------------------------------------GCCG--GGCGTCAAGGA-CACGT 20 consensus_8686#1 TCCATATTACACTACATCTCTTCCCTTCAATTACCCCCCTTTTAGCACACAAAAATGGCT 174 * ** * * * consensus_8686#0 CGTCAACATCGCCAAGCTCTCTG-----CCGCCGTCGACGTCGTCAAGACCCGC--GAGG 1013 consensus_8686#2 CGTCTACATCGCCAAGCTTTCTG-----CC-CCGTGGACGTCGTCAAGACCCGCCGAGGG 74 consensus_8686#1 GGCCTGTCCCTGCAGCATCCCTGGGCTTTTGCCTTCGGCCTCCTTGGCAACCTCATATCC 234 * * * ** * *** ** * * * ** * * ** * consensus_8686#0 TGCAC--CCCGTC-GACGTCGAGTCCCCGCCGGCAGAGGCGCCGCCTGAGGAGGACGACA 1070 consensus_8686#2 TGCAC--CCCGTC-GACGTCGAGTCCCCCCCGGCAGAGGCGCCCCCCCAGGAGGACGACA 131 consensus_8686#1 TTCACGACCTATCTGGCACCAATCCCGACGTTCTACCGGATCTACAAGAGCAAGTCGACG 294 * *** ** ** * * * * ** * ** * * ** * * **** consensus_8686#0 AGGCCGCCGCCGCCACCGCCGCCGCCGTCGCCGGCGCCGGCGAGAAGAAGGTAGCTGCA- 1129 consensus_8686#2 AGGCCGCCGCCACCGCCGCCGCCGGTAGT-CCGGCCCCGGCGAGAAGAAGGTAGCGGCAA 190 consensus_8686#1 GAGGGGTTCCAGTCGGTGCCGTACGTGGTGGCGCTCTTCAGCGCCATGCTGTGGATCTTC 354 * * * * **** ** * ** * consensus_8686#0 TGAGTGC-GTGCATGCGTACATGGGTCGCCGTAAGAAGGAAGAAGGC-----GTGACGT- 1182 consensus_8686#2 TGAGTGC-GTGCATGCGTACCTGGGTCCCCGTAAGAAGGAAGAAGGC-----GTGACGT- 243 consensus_8686#1 TACGCGCTGATCAAGTCCAACGAGGCCCTCCTCATCACCATCAACGCCGCCGGTTGCGTC 414 * * ** * ** * * ** * * * * * * ** ** ** *** consensus_8686#0 GTCCAGCCCGTACGCG-CGCCAC-GTGGCCAAGCTA-GCTTCAGAGCTAGTGAAGCTGCA 1239 consensus_8686#2 GTCCAGCCCGTACGCG-CGCCACCGTGGCCCAGCTA-GCTTCAGAGCTAGTGAAGCTGCA 301 consensus_8686#1 ATCGAGACCATCTACATCGTCAT-GTACCTCGCCTACGCCCCCAAGAAGGCCAAGGTGTT 473 ** ** ** * * ** ** ** * *** ** * ** * *** ** consensus_8686#0 GACATGCTAG--CTGGCTA--GCTAGCAGTGAGAGA--GTGCGACGACTA---AAAAAAA 1290 consensus_8686#2 GACATGCTAG--CTGGCTA--GCTACCCGTGAGAGA--TTGCGACGACTATAAAGAAAAA 355 consensus_8686#1 CACGACGAAGATCCTGCTGCTGCTGAACGTGGGGGTGTTCGGGGTGATCCTGCTGCTGAC 533 ** ** * *** *** *** * * * * ** * consensus_8686#0 AGTAGTGATTAATTAAGGGCTTGTAATTTAATCGTTGTTTTTTTTTTTCTCTGTTTCGTT 1350 consensus_8686#2 ATTAGTGATTAATT---------------------------------------------- 369 consensus_8686#1 GCTGCTGCTCTCCCATGGCGAGCAGCGCGTCGTCTCCCTCGGCTGGGTCTGCGTCGCCTT 593 * ** * consensus_8686#0 GAGATCGATATCGTTGTCACCATGCATGTATTTCGTTTTTGATTCTCAGTAATTAATTAG 1410 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 CTCCGTCAGCGTCTTTGTCGCGCCGCTCAGCATCATCAAGCGAGTGATCCAGTCGAGGAG 653 consensus_8686#0 ATGGGCTTTCTGTAATTCAACCTGTAAGGGTTCCTTCCATGATTAATTAATTAGCGTGTT 1470 consensus_8686#2 ------------------------------------------------------------ consensus_8686#1 CGTGGAGTACATGCCCTTCTCCCTCTCCCTCAC--------------------------- 686 consensus_8686#0 AATAATTGTCCCNCCNAAAAAAAAAAAAAAAAAA 1504 consensus_8686#2 ---------------------------------- consensus_8686#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||