These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1520 fasta sequence [GCCATGGCGCCTGCAAGCGACCGGAATGGCCACGAAGGCCGCCGCCGCGTGCTGCTGCTCCCGCTGCCATACCACGGCCACATCAACCCCATGCTCCGCCTCGCCGCCGCGCTGCACGACCGCGGCCTCGCCGTCACCGTCGTCCACACGGAGACGCGCGCGCCCGACCGCCGGAGCCTCCCCGCCGGGTGCGAGCTGGTGACCGTGCCGGACGGCCTCCCGCCGGAGCTGGCCGCGTCCGGCGACATCCCGTCGTTCGTGTTCGCGCTGAACAGGAACTGCGCGGCGCCGTTCCGTGACCTCCTCGCCGGCGCGCTCCGGCAGGAGGAGGAGGAGGAGGACGGCGGCGGCGTCGCGTGCGTGGTCGCCGACGTCGACTGGTTCGCGCCGCTCGCCGCGGCGAGGGAGCTCGGCGTGCCGGCGCTGGCGCTGATGACCAGCAGCGCGGCGAGGTTCAGGGTGTACCTGGCGTACCCTCGGCTGTGTGAAAAGGGATATTTACCTGTCCAAGAGTCAAATCTGGACATGCCAGTGGACAAGCATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCCTACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTCAACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATCCCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAGAAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCAGGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTGGAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGGCTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGCAGAGGGAGGATCATCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGCGCGTTTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCCGATGATATGCAAGCCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTNATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK069996 [GCCATGGCGCCTGCAAGCGACCGGAATGGCCACGAAGGCCGCCGCCGCGTGCTGCTGCTCCCGCTGCCATACCACGGCCACATCAACCCCATGCTCCGCCTCGCCGCCGCGCTGCACGACCGCGGCCTCGCCGTCACCGTCGTCCACACGGAGACGCGCGCGCCCGACCGCCGGAGCCTCCCCGCCGGGTGCGAGCTGGTGACCGTGCCGGACGGCCTCCCGCCGGAGCTGGCCGCGTCCGGCGACATCCCGTCGTTCGTGTTCGCGCTGAACAGGAACTGCGCGGCGCCGTTCCGTGACCTCCTCGCCGGCGCGCTCCGGCAGGAGGAGGAGGAGGAGGACGGCGGCGGCGTCGCGTGCGTGGTCGCCGACGTCGACTGGTTCGCGCCGCTCGCCGCGGCGAGGGAGCTCGGCGTGCCGGCGCTGGCGCTGATGACCAGCAGCGCGGCGAGGTTCAGGGTGTACCTGGCGTACCCTCGGCTGTGTGAAAAGGGATATTTACCTGTCCAAGAGTCAAATCTGGACATGCCAGTGGACAAGCATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCCTACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTCAACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATCCCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAGAAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCAGGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTGGAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGGCTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGCAGAGGGAGGATCATCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGCGCGTTTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCCGATGATATGCAAGCCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTT ] [+] EMBL CF313296 [ acggtATGACAGTGGACAAGCATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCCTACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTCAACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATCCCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAGAAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCAGGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTGGAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGGCTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGCGGAGGGAGGATCACCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGCGCG TTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCCGATGATATG ] [+] EMBL AU057409 [ TGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTNCCGATGATATGCAAGCCATNTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGNCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTNATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AW070175 [ gcCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAAAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTTTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTTTGCGACAATTATTCTTATGAATTTATCGCATTTGGT ] consensusID : consensus_8689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [TTGTGGGTGGAAACTCGACCTGGAGAATATCCAGGACCGGTGCCGATGATATGCAACCATGTGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGGTGGAAGGTGGGTGTTAGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTAATTGGCACATGAAAATGTCTTACACACCACTTGTATTAAGCTCAGCCCAGGATTTGGAACCTCATCTAGAAACATTTCACATCAAAAA] [+] EMBL BI809258 [TTGTGGGTGGAAACTCGACCTGGAGAATATCCAGGACCGGTGCCGATGATATGCAACCATGTGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGGTGGAAGGTGGGTGTTAGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTAATTGGCACATGAAAATGTCTTACACACCACTTGTATTAAGCTCAGCCCAGGATTTGGAACCTCATCTAGAAACATTTCACATCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8689#0 GCCATGGCGCCTGCAAGCGACCGGAATGGCCACGAAGGCCGCCGCCGCGTGCTGCTGCTC 60 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 CCGCTGCCATACCACGGCCACATCAACCCCATGCTCCGCCTCGCCGCCGCGCTGCACGAC 120 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 CGCGGCCTCGCCGTCACCGTCGTCCACACGGAGACGCGCGCGCCCGACCGCCGGAGCCTC 180 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 CCCGCCGGGTGCGAGCTGGTGACCGTGCCGGACGGCCTCCCGCCGGAGCTGGCCGCGTCC 240 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 GGCGACATCCCGTCGTTCGTGTTCGCGCTGAACAGGAACTGCGCGGCGCCGTTCCGTGAC 300 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 CTCCTCGCCGGCGCGCTCCGGCAGGAGGAGGAGGAGGAGGACGGCGGCGGCGTCGCGTGC 360 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 GTGGTCGCCGACGTCGACTGGTTCGCGCCGCTCGCCGCGGCGAGGGAGCTCGGCGTGCCG 420 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 GCGCTGGCGCTGATGACCAGCAGCGCGGCGAGGTTCAGGGTGTACCTGGCGTACCCTCGG 480 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 CTGTGTGAAAAGGGATATTTACCTGTCCAAGAGTCAAATCTGGACATGCCAGTGGACAAG 540 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 CATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCC 600 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 TACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTC 660 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 AACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATC 720 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 CCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAG 780 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 AAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCA 840 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 GGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTG 900 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 GAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGG 960 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 CTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGC 1020 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 AGAGGGAGGATCATCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGC 1080 consensus_8689#1 ------------------------------------------------------------ consensus_8689#0 GCGTTTTTTGACACACTGTGGGTGGAA-CTCGACGCTGGAGAGCATATCCAGGACCG-TG 1138 consensus_8689#1 ---------------TTGTGGGTGGAAACTCGAC-CTGGAGA--ATATCCAGGACCGGTG 42 *********** ****** ******* ************* ** consensus_8689#0 CCGATGATATGCAAGCCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGAC 1198 consensus_8689#1 CCGATGATATGCAA-CCATGTG-CGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGAC 100 ************** ******* ************************************* consensus_8689#0 ATG-TGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACA 1257 consensus_8689#1 ATGGTGGAAGGTGGGTGTTAGG-TTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACA 159 *** ****************** ************************************* consensus_8689#0 GGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAG 1317 consensus_8689#1 GGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAG 219 ************************************************************ consensus_8689#0 AGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCT 1377 consensus_8689#1 AGAGATGGGTGATGTCGTGTCAAA-TGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCT 278 ************************ *********************************** consensus_8689#0 ACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTA 1437 consensus_8689#1 ACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTA 338 ************************************************************ consensus_8689#0 GTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTNATTGGCAAAA 1497 consensus_8689#1 GTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTAATTGGCACAT 398 ************************************************* ******* * consensus_8689#0 AAAAAAAAAAAAAAAAAAAAAAA------------------------------------- 1520 consensus_8689#1 GAAAATGTCTTACACACCACTTGTATTAAGCTCAGCCCAGGATTTGGAACCTCATCTAGA 458 **** * * * * consensus_8689#0 ------------------ consensus_8689#1 AACATTTCACATCAAAAA 476 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||