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Oryza sativa
cluster # 8689 cluster # 8689       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8689#0 length = 1520 sequences # 4  
consensus_8689#1 length = 476 sequences # 1  

consensusID : consensus_8689#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1520
fasta sequence
                              [GCCATGGCGCCTGCAAGCGACCGGAATGGCCACGAAGGCCGCCGCCGCGTGCTGCTGCTCCCGCTGCCATACCACGGCCACATCAACCCCATGCTCCGCCTCGCCGCCGCGCTGCACGACCGCGGCCTCGCCGTCACCGTCGTCCACACGGAGACGCGCGCGCCCGACCGCCGGAGCCTCCCCGCCGGGTGCGAGCTGGTGACCGTGCCGGACGGCCTCCCGCCGGAGCTGGCCGCGTCCGGCGACATCCCGTCGTTCGTGTTCGCGCTGAACAGGAACTGCGCGGCGCCGTTCCGTGACCTCCTCGCCGGCGCGCTCCGGCAGGAGGAGGAGGAGGAGGACGGCGGCGGCGTCGCGTGCGTGGTCGCCGACGTCGACTGGTTCGCGCCGCTCGCCGCGGCGAGGGAGCTCGGCGTGCCGGCGCTGGCGCTGATGACCAGCAGCGCGGCGAGGTTCAGGGTGTACCTGGCGTACCCTCGGCTGTGTGAAAAGGGATATTTACCTGTCCAAGAGTCAAATCTGGACATGCCAGTGGACAAGCATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCCTACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTCAACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATCCCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAGAAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCAGGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTGGAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGGCTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGCAGAGGGAGGATCATCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGCGCGTTTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCCGATGATATGCAAGCCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTNATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK069996             [GCCATGGCGCCTGCAAGCGACCGGAATGGCCACGAAGGCCGCCGCCGCGTGCTGCTGCTCCCGCTGCCATACCACGGCCACATCAACCCCATGCTCCGCCTCGCCGCCGCGCTGCACGACCGCGGCCTCGCCGTCACCGTCGTCCACACGGAGACGCGCGCGCCCGACCGCCGGAGCCTCCCCGCCGGGTGCGAGCTGGTGACCGTGCCGGACGGCCTCCCGCCGGAGCTGGCCGCGTCCGGCGACATCCCGTCGTTCGTGTTCGCGCTGAACAGGAACTGCGCGGCGCCGTTCCGTGACCTCCTCGCCGGCGCGCTCCGGCAGGAGGAGGAGGAGGAGGACGGCGGCGGCGTCGCGTGCGTGGTCGCCGACGTCGACTGGTTCGCGCCGCTCGCCGCGGCGAGGGAGCTCGGCGTGCCGGCGCTGGCGCTGATGACCAGCAGCGCGGCGAGGTTCAGGGTGTACCTGGCGTACCCTCGGCTGTGTGAAAAGGGATATTTACCTGTCCAAGAGTCAAATCTGGACATGCCAGTGGACAAGCATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCCTACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTCAACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATCCCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAGAAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCAGGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTGGAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGGCTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGCAGAGGGAGGATCATCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGCGCGTTTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCCGATGATATGCAAGCCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTT                                     ]
[+] EMBL CF313296             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        acggtATGACAGTGGACAAGCATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCCTACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTCAACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATCCCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAGAAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCAGGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTGGAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGGCTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGCGGAGGGAGGATCACCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGCGCG TTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCCGATGATATG                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU057409             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTNCCGATGATATGCAAGCCATNTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGNCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTNATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AW070175             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           gcCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAAAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTTTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTTTGCGACAATTATTCTTATGAATTTATCGCATTTGGT                                  ]


>consensus_8689#0 GCCATGGCGCCTGCAAGCGACCGGAATGGCCACGAAGGCCGCCGCCGCGTGCTGCTGCTC CCGCTGCCATACCACGGCCACATCAACCCCATGCTCCGCCTCGCCGCCGCGCTGCACGAC CGCGGCCTCGCCGTCACCGTCGTCCACACGGAGACGCGCGCGCCCGACCGCCGGAGCCTC CCCGCCGGGTGCGAGCTGGTGACCGTGCCGGACGGCCTCCCGCCGGAGCTGGCCGCGTCC GGCGACATCCCGTCGTTCGTGTTCGCGCTGAACAGGAACTGCGCGGCGCCGTTCCGTGAC CTCCTCGCCGGCGCGCTCCGGCAGGAGGAGGAGGAGGAGGACGGCGGCGGCGTCGCGTGC GTGGTCGCCGACGTCGACTGGTTCGCGCCGCTCGCCGCGGCGAGGGAGCTCGGCGTGCCG GCGCTGGCGCTGATGACCAGCAGCGCGGCGAGGTTCAGGGTGTACCTGGCGTACCCTCGG CTGTGTGAAAAGGGATATTTACCTGTCCAAGAGTCAAATCTGGACATGCCAGTGGACAAG CATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCC TACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTC AACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATC CCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAG AAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCA GGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTG GAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGG CTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGC AGAGGGAGGATCATCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGC GCGTTTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCC GATGATATGCAAGCCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACAT GTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGC AGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGA GATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACA GGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTG AACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTNATTGGCAAAAAAA AAAAAAAAAAAAAAAAAAAA



consensusID : consensus_8689#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence
                              [TTGTGGGTGGAAACTCGACCTGGAGAATATCCAGGACCGGTGCCGATGATATGCAACCATGTGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGGTGGAAGGTGGGTGTTAGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTAATTGGCACATGAAAATGTCTTACACACCACTTGTATTAAGCTCAGCCCAGGATTTGGAACCTCATCTAGAAACATTTCACATCAAAAA]

[+] EMBL BI809258             [TTGTGGGTGGAAACTCGACCTGGAGAATATCCAGGACCGGTGCCGATGATATGCAACCATGTGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGGTGGAAGGTGGGTGTTAGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTAATTGGCACATGAAAATGTCTTACACACCACTTGTATTAAGCTCAGCCCAGGATTTGGAACCTCATCTAGAAACATTTCACATCAAAAA]


>consensus_8689#1 TTGTGGGTGGAAACTCGACCTGGAGAATATCCAGGACCGGTGCCGATGATATGCAACCAT GTGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGGTGGAAGGTGGGTGTTA GGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGAT GGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTC AAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATC AAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAAT TATTCTTATGAATTTATCGCATTTGGTAATTGGCACATGAAAATGTCTTACACACCACTT GTATTAAGCTCAGCCCAGGATTTGGAACCTCATCTAGAAACATTTCACATCAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8689#0      GCCATGGCGCCTGCAAGCGACCGGAATGGCCACGAAGGCCGCCGCCGCGTGCTGCTGCTC 60
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      CCGCTGCCATACCACGGCCACATCAACCCCATGCTCCGCCTCGCCGCCGCGCTGCACGAC 120
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      CGCGGCCTCGCCGTCACCGTCGTCCACACGGAGACGCGCGCGCCCGACCGCCGGAGCCTC 180
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      CCCGCCGGGTGCGAGCTGGTGACCGTGCCGGACGGCCTCCCGCCGGAGCTGGCCGCGTCC 240
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      GGCGACATCCCGTCGTTCGTGTTCGCGCTGAACAGGAACTGCGCGGCGCCGTTCCGTGAC 300
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      CTCCTCGCCGGCGCGCTCCGGCAGGAGGAGGAGGAGGAGGACGGCGGCGGCGTCGCGTGC 360
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      GTGGTCGCCGACGTCGACTGGTTCGCGCCGCTCGCCGCGGCGAGGGAGCTCGGCGTGCCG 420
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      GCGCTGGCGCTGATGACCAGCAGCGCGGCGAGGTTCAGGGTGTACCTGGCGTACCCTCGG 480
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      CTGTGTGAAAAGGGATATTTACCTGTCCAAGAGTCAAATCTGGACATGCCAGTGGACAAG 540
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      CATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCC 600
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      TACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTC 660
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      AACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATC 720
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      CCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAG 780
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      AAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCA 840
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      GGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTG 900
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      GAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGG 960
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      CTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGC 1020
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      AGAGGGAGGATCATCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGC 1080
consensus_8689#1      ------------------------------------------------------------
                                                                                  

consensus_8689#0      GCGTTTTTTGACACACTGTGGGTGGAA-CTCGACGCTGGAGAGCATATCCAGGACCG-TG 1138
consensus_8689#1      ---------------TTGTGGGTGGAAACTCGAC-CTGGAGA--ATATCCAGGACCGGTG 42
                                      *********** ****** *******  ************* **

consensus_8689#0      CCGATGATATGCAAGCCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGAC 1198
consensus_8689#1      CCGATGATATGCAA-CCATGTG-CGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGAC 100
                      ************** ******* *************************************

consensus_8689#0      ATG-TGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACA 1257
consensus_8689#1      ATGGTGGAAGGTGGGTGTTAGG-TTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACA 159
                      *** ****************** *************************************

consensus_8689#0      GGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAG 1317
consensus_8689#1      GGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAG 219
                      ************************************************************

consensus_8689#0      AGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCT 1377
consensus_8689#1      AGAGATGGGTGATGTCGTGTCAAA-TGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCT 278
                      ************************ ***********************************

consensus_8689#0      ACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTA 1437
consensus_8689#1      ACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTA 338
                      ************************************************************

consensus_8689#0      GTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTNATTGGCAAAA 1497
consensus_8689#1      GTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTAATTGGCACAT 398
                      ************************************************* ******* * 

consensus_8689#0      AAAAAAAAAAAAAAAAAAAAAAA------------------------------------- 1520
consensus_8689#1      GAAAATGTCTTACACACCACTTGTATTAAGCTCAGCCCAGGATTTGGAACCTCATCTAGA 458
                       ****      * * *  *                                         

consensus_8689#0      ------------------
consensus_8689#1      AACATTTCACATCAAAAA 476
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)