cluster # 869

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Oryza sativa
cluster # 869 cluster # 869 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_869#0 length = 1255 sequences # 1

consensus_869#1 length = 591 sequences # 1

consensusID : consensus_869#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1255
fasta sequence

                              [CCCTCCCGATTTTCTTCGCTTTTTCTCTGTCCCCTCCATCAGCGCCTCCCTCCCACCCGCATCTTCTTCCACCTCCTCCCATCCATCCGAGCTCCTTCCCTTCCACCTCCCATCCGTCGACGCCAACGCCGGTGGTGCGGCGGCCAACCTGGCCCATGCGCCGCCGCCACCGGTGCCCAACCTGGCCCGTGCGGTGGGGGCACCGCCGGGGAAGCGAATCGAGGTGGTGTGGGAGCGGGAGAACACGCTGCTCTCGTTCGGCCAGGCCGCCGCGCACGCCGCCGTCGCCTTCGTCGAGTTCAACGTCCAGTTTACGGGCTGGCGGCAGAATGCGGCCTAGCGGCAGGGTTCGCGGGACGTGGTGGTTGCTAGGCAAAGAGCCGCGTCCAGTGGCGGAAGGCGTTTGTTTTGACGACTTGGTGTTTGTCCCTGACTCGGATGATGAAGGGGCTGGCAATGAGTTCAACTCACAAGGTTTTGACGACGAATTTGTGCCTGAAACACAACAAGATGTTCCAATCGAGGAGATTGGCATAGGGTTCCTCTCTTATTTATTTAATTATTAGTCCTTTCCATTCAATTTTGTTAAATAATGTGCTTTTTGATGTTCCATTTATTTCTCCTTACGGTGCAGCCATCCTGTGACAAGCAAATCAGGAGGGCCGCGCCAGCTCGGAGTGCATCCTCGCTTGGGTACAATGTTGCACGATTGGCTTCGGGCTATTTCAGAGTATGAGAAGCCAAGCATCGACATGACAACCATCGAGAAGGCATGGGCCGATGAGAAAAAGGCAATCGCTGATGCGGACTATGAGGGAAATCCAAGCAAGGTGAACACAAGCTCCGAGAAGAAGGCATGTGTCGACGAGGGGAAGTCAATCTCCGATGCAGAAACTGATGATGAGGGCGTCGGTGTGCCTGAGAAGAAGGCATGCATCGCCGAGGGAAAGTCAATCTCCGACGCAGAGACTGATGATGAGGGCGTCGGTGTGCCTCGGAATTTACAGATGAAAGATTTGCACGATATCATGTTTCCTACCTGCTGAATGTGATTGTGTTGTGGTATTTTATTGTGGAAATGCACAATGGACATAGGAGTACTTAGTGCAATATGGATGTAAGACTACCATGTTTATAAGTGTACAAATTACCGTAGTGTTCCATATGGTTGCCAGACTAGTACGAAGTATTTTGTTATGGAAATGCCCTAGTTATAGTCATATACTCCTATAATATATTGTTCTAATGATTGTAG]

[+] EMBL AK071617             [CCCTCCCGATTTTCTTCGCTTTTTCTCTGTCCCCTCCATCAGCGCCTCCCTCCCACCCGCATCTTCTTCCACCTCCTCCCATCCATCCGAGCTCCTTCCCTTCCACCTCCCATCCGTCGACGCCAACGCCGGTGGTGCGGCGGCCAACCTGGCCCATGCGCCGCCGCCACCGGTGCCCAACCTGGCCCGTGCGGTGGGGGCACCGCCGGGGAAGCGAATCGAGGTGGTGTGGGAGCGGGAGAACACGCTGCTCTCGTTCGGCCAGGCCGCCGCGCACGCCGCCGTCGCCTTCGTCGAGTTCAACGTCCAGTTTACGGGCTGGCGGCAGAATGCGGCCTAGCGGCAGGGTTCGCGGGACGTGGTGGTTGCTAGGCAAAGAGCCGCGTCCAGTGGCGGAAGGCGTTTGTTTTGACGACTTGGTGTTTGTCCCTGACTCGGATGATGAAGGGGCTGGCAATGAGTTCAACTCACAAGGTTTTGACGACGAATTTGTGCCTGAAACACAACAAGATGTTCCAATCGAGGAGATTGGCATAGGGTTCCTCTCTTATTTATTTAATTATTAGTCCTTTCCATTCAATTTTGTTAAATAATGTGCTTTTTGATGTTCCATTTATTTCTCCTTACGGTGCAGCCATCCTGTGACAAGCAAATCAGGAGGGCCGCGCCAGCTCGGAGTGCATCCTCGCTTGGGTACAATGTTGCACGATTGGCTTCGGGCTATTTCAGAGTATGAGAAGCCAAGCATCGACATGACAACCATCGAGAAGGCATGGGCCGATGAGAAAAAGGCAATCGCTGATGCGGACTATGAGGGAAATCCAAGCAAGGTGAACACAAGCTCCGAGAAGAAGGCATGTGTCGACGAGGGGAAGTCAATCTCCGATGCAGAAACTGATGATGAGGGCGTCGGTGTGCCTGAGAAGAAGGCATGCATCGCCGAGGGAAAGTCAATCTCCGACGCAGAGACTGATGATGAGGGCGTCGGTGTGCCTCGGAATTTACAGATGAAAGATTTGCACGATATCATGTTTCCTACCTGCTGAATGTGATTGTGTTGTGGTATTTTATTGTGGAAATGCACAATGGACATAGGAGTACTTAGTGCAATATGGATGTAAGACTACCATGTTTATAAGTGTACAAATTACCGTAGTGTTCCATATGGTTGCCAGACTAGTACGAAGTATTTTGTTATGGAAATGCCCTAGTTATAGTCATATACTCCTATAATATATTGTTCTAATGATTGTAG]




>consensus_869#0
CCCTCCCGATTTTCTTCGCTTTTTCTCTGTCCCCTCCATCAGCGCCTCCCTCCCACCCGC
ATCTTCTTCCACCTCCTCCCATCCATCCGAGCTCCTTCCCTTCCACCTCCCATCCGTCGA
CGCCAACGCCGGTGGTGCGGCGGCCAACCTGGCCCATGCGCCGCCGCCACCGGTGCCCAA
CCTGGCCCGTGCGGTGGGGGCACCGCCGGGGAAGCGAATCGAGGTGGTGTGGGAGCGGGA
GAACACGCTGCTCTCGTTCGGCCAGGCCGCCGCGCACGCCGCCGTCGCCTTCGTCGAGTT
CAACGTCCAGTTTACGGGCTGGCGGCAGAATGCGGCCTAGCGGCAGGGTTCGCGGGACGT
GGTGGTTGCTAGGCAAAGAGCCGCGTCCAGTGGCGGAAGGCGTTTGTTTTGACGACTTGG
TGTTTGTCCCTGACTCGGATGATGAAGGGGCTGGCAATGAGTTCAACTCACAAGGTTTTG
ACGACGAATTTGTGCCTGAAACACAACAAGATGTTCCAATCGAGGAGATTGGCATAGGGT
TCCTCTCTTATTTATTTAATTATTAGTCCTTTCCATTCAATTTTGTTAAATAATGTGCTT
TTTGATGTTCCATTTATTTCTCCTTACGGTGCAGCCATCCTGTGACAAGCAAATCAGGAG
GGCCGCGCCAGCTCGGAGTGCATCCTCGCTTGGGTACAATGTTGCACGATTGGCTTCGGG
CTATTTCAGAGTATGAGAAGCCAAGCATCGACATGACAACCATCGAGAAGGCATGGGCCG
ATGAGAAAAAGGCAATCGCTGATGCGGACTATGAGGGAAATCCAAGCAAGGTGAACACAA
GCTCCGAGAAGAAGGCATGTGTCGACGAGGGGAAGTCAATCTCCGATGCAGAAACTGATG
ATGAGGGCGTCGGTGTGCCTGAGAAGAAGGCATGCATCGCCGAGGGAAAGTCAATCTCCG
ACGCAGAGACTGATGATGAGGGCGTCGGTGTGCCTCGGAATTTACAGATGAAAGATTTGC
ACGATATCATGTTTCCTACCTGCTGAATGTGATTGTGTTGTGGTATTTTATTGTGGAAAT
GCACAATGGACATAGGAGTACTTAGTGCAATATGGATGTAAGACTACCATGTTTATAAGT
GTACAAATTACCGTAGTGTTCCATATGGTTGCCAGACTAGTACGAAGTATTTTGTTATGG
AAATGCCCTAGTTATAGTCATATACTCCTATAATATATTGTTCTAATGATTGTAG

consensusID : consensus_869#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [CCACGCCTCCTCCACCAATGGCGCTCCCGGCGGCGACGGCCCGCGCGGCGGCGCTGTGCCGGATCGCGGCGTGCGCGTCGGCATCGTCGGCGGCGGCGGCGGCGACCGGGGGGAGGCGCGGGGCGGAGAAGCTGCCGTTCTCGCTGGCGGAGCGGGGGATGGTGGTGGGGGGGCACCGCGGGATGGGGATGAACGCGGTGGGGGCGCCGCCGGGGGCGCGGATCGAGGCGGTGAGGGAGCGGGAGAACACGCTGCTCTCGTTCGGGCGTGCCGCCGCGCACGCCGCCGTCGCCTTCGTCGAGTTCGACGTCCAGGTTACAAAAGATGGCTGCCCAATAATCTTCCATGATGACTTCATCCTAACACAAGAAACTGATGCAGCCTATGACAAGCGCGTTACTGATCTTCTCTTGCAAGAATTTCTTTCATATGGGCCGCAAAAGAATTCCCATGAGATCTCCAAGCCATTGCTTAGACGGACCAGCGATGGCGATAGTTGTTAACTGCAGCGCAAATGATGATGATTGCCTATGCACCTTGGGAGAAGCCTTTGAAACGGGCGATCCTCGGCGTAGGATTTTACATTGACGT]

[+] EMBL CA758775             [CCACGCCTCCTCCACCAATGGCGCTCCCGGCGGCGACGGCCCGCGCGGCGGCGCTGTGCCGGATCGCGGCGTGCGCGTCGGCATCGTCGGCGGCGGCGGCGGCGACCGGGGGGAGGCGCGGGGCGGAGAAGCTGCCGTTCTCGCTGGCGGAGCGGGGGATGGTGGTGGGGGGGCACCGCGGGATGGGGATGAACGCGGTGGGGGCGCCGCCGGGGGCGCGGATCGAGGCGGTGAGGGAGCGGGAGAACACGCTGCTCTCGTTCGGGCGTGCCGCCGCGCACGCCGCCGTCGCCTTCGTCGAGTTCGACGTCCAGGTTACAAAAGATGGCTGCCCAATAATCTTCCATGATGACTTCATCCTAACACAAGAAACTGATGCAGCCTATGACAAGCGCGTTACTGATCTTCTCTTGCAAGAATTTCTTTCATATGGGCCGCAAAAGAATTCCCATGAGATCTCCAAGCCATTGCTTAGACGGACCAGCGATGGCGATAGTTGTTAACTGCAGCGCAAATGATGATGATTGCCTATGCACCTTGGGAGAAGCCTTTGAAACGGGCGATCCTCGGCGTAGGATTTTACATTGACGT]




>consensus_869#1
CCACGCCTCCTCCACCAATGGCGCTCCCGGCGGCGACGGCCCGCGCGGCGGCGCTGTGCC
GGATCGCGGCGTGCGCGTCGGCATCGTCGGCGGCGGCGGCGGCGACCGGGGGGAGGCGCG
GGGCGGAGAAGCTGCCGTTCTCGCTGGCGGAGCGGGGGATGGTGGTGGGGGGGCACCGCG
GGATGGGGATGAACGCGGTGGGGGCGCCGCCGGGGGCGCGGATCGAGGCGGTGAGGGAGC
GGGAGAACACGCTGCTCTCGTTCGGGCGTGCCGCCGCGCACGCCGCCGTCGCCTTCGTCG
AGTTCGACGTCCAGGTTACAAAAGATGGCTGCCCAATAATCTTCCATGATGACTTCATCC
TAACACAAGAAACTGATGCAGCCTATGACAAGCGCGTTACTGATCTTCTCTTGCAAGAAT
TTCTTTCATATGGGCCGCAAAAGAATTCCCATGAGATCTCCAAGCCATTGCTTAGACGGA
CCAGCGATGGCGATAGTTGTTAACTGCAGCGCAAATGATGATGATTGCCTATGCACCTTG
GGAGAAGCCTTTGAAACGGGCGATCCTCGGCGTAGGATTTTACATTGACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_869#0      CCCTCCCGATTTTCTTCGCTTTTTCTCTGTCCCCTCCATCAGCGCCT-CCCTCCCACCCG 59
consensus_869#1      ----CCACGCCTCCTCCAC-----CAATGGCGCTCCCGGCGGCGACGGCCCGCGCGGCGG 51
                         **     * ** * *     *  ** * *  **  * *** *  *** * *  * *

consensus_869#0      CATCTTCTTCCACCTCCTCCCATCCATCCGAGCTCCTTCCCTTCCACCTCCCATCCGTCG 119
consensus_869#1      CG--CTGTGCCGGATCGCGGCGTGCGCGTCGGCATCGTCGGCGGCGGCGGCGGCGACCGG 109
                     *    * * **   **    * * *      **  * **     *  *  *        *

consensus_869#0      ACGCCAACGCCGG-TGGTGCGGCGGCCAACCTGGCCCATGCGCCG-----CCGCCACCGG 173
consensus_869#1      GGGGAGGCGCGGGGCGGAGAAGCTGCCGTTCTCGCTGGCGGAGCGGGGGATGGTGGTGGG 169
                       *    *** **  ** *  ** ***   ** **    *   **       *     **

consensus_869#0      TGCCCAACCTGGCCCG--------TGCGGTGGGGGCACCGCCGGGGAAGCGAATCGAGGT 225
consensus_869#1      GGGGCACCGCGGGATGGGGATGAACGCGGTGGGGGCGCCGCCGGGGGCGCGGATCGAGGC 229
                      *  ** *  **   *         *********** *********  *** ******* 

consensus_869#0      GGTGTGGGAGCGGGAGAACACGCTGCTCTCGTTCGGCCAGGCCGCCGCGCACGCCGCCGT 285
consensus_869#1      GGTGAGGGAGCGGGAGAACACGCTGCTCTCGTTCGGGCGTGCCGCCGCGCACGCCGCCGT 289
                     **** ******************************* *  ********************

consensus_869#0      CGCCTTCGTCGAGTTCAACGTCCAGTTTACGGGCTGGCGGCAGAATGCGGCCTAGCGGCA 345
consensus_869#1      CGCCTTCGTCGAGTTCGACGTCCAGGTTACAAA--------AGATGGCTGCCCAATAATC 341
                     **************** ******** ****           ***  ** *** *      

consensus_869#0      GGGTTCGCGG-GACGTGGTGGTTGCTAGGCAAAGAGCCGCGTCCAGTGGCGGAAGGCGTT 404
consensus_869#1      --TTCCATGATGACTTCATCCTAACACAAGAAACTGATGCAGCCTATGACA-AGCGCGTT 398
                        * *  *  *** *  *  *  *     ***  *  **  **  ** *  *  *****

consensus_869#0      TGTTTTGACGACTTG-GTGTTTGTCCCTGACTCGGATGATGAAGGGGCTGGCAATGAGTT 463
consensus_869#1      ACTGATCTTCTCTTGCAAGAATTTCTTTCATATGGGCCGCAAAAGAATTCCCA-TGAGAT 457
                       *  *     ****   *  * **  * *   **      ** *   *  ** **** *

consensus_869#0      CAACTCACAAG-GTTTTGACGACGAATTTGTGCCTGAAACACAACAAGATGTTCCAATCG 522
consensus_869#1      CTCCAAGCCATTGCTTAGACGGACCAGCGATGGCGATAGTTGTTAACTGCAGCGCAAATG 517
                     *  *   * *  * ** ****    *    ** *   *       *        ***  *

consensus_869#0      AGGAGATTGGCATAGGGTTCCTCTCTTATTTATTT--AATTATTAGTCCTTTCCATTCAA 580
consensus_869#1      ATGATGATTGCCTATGCACCTTGGGAGAAGCCTTTGAAACGGGCGATCCTCGGCGTAGGA 577
                     * **   * ** ** *   * *     *    ***  **       ****   * *   *

consensus_869#0      TTTTGTTAAATAATGTGCTTTTTGATGTTCCATTTATTTCTCCTTACGGTGCAGCCATCC 640
consensus_869#1      TTTTAC--ATTGACGT-------------------------------------------- 591
                     ****    * * * **                                            

consensus_869#0      TGTGACAAGCAAATCAGGAGGGCCGCGCCAGCTCGGAGTGCATCCTCGCTTGGGTACAAT 700
consensus_869#1      ------------------------------------------------------------
                                                                                 

consensus_869#0      GTTGCACGATTGGCTTCGGGCTATTTCAGAGTATGAGAAGCCAAGCATCGACATGACAAC 760
consensus_869#1      ------------------------------------------------------------
                                                                                 

consensus_869#0      CATCGAGAAGGCATGGGCCGATGAGAAAAAGGCAATCGCTGATGCGGACTATGAGGGAAA 820
consensus_869#1      ------------------------------------------------------------
                                                                                 

consensus_869#0      TCCAAGCAAGGTGAACACAAGCTCCGAGAAGAAGGCATGTGTCGACGAGGGGAAGTCAAT 880
consensus_869#1      ------------------------------------------------------------
                                                                                 

consensus_869#0      CTCCGATGCAGAAACTGATGATGAGGGCGTCGGTGTGCCTGAGAAGAAGGCATGCATCGC 940
consensus_869#1      ------------------------------------------------------------
                                                                                 

consensus_869#0      CGAGGGAAAGTCAATCTCCGACGCAGAGACTGATGATGAGGGCGTCGGTGTGCCTCGGAA 1000
consensus_869#1      ------------------------------------------------------------
                                                                                 

consensus_869#0      TTTACAGATGAAAGATTTGCACGATATCATGTTTCCTACCTGCTGAATGTGATTGTGTTG 1060
consensus_869#1      ------------------------------------------------------------
                                                                                 

consensus_869#0      TGGTATTTTATTGTGGAAATGCACAATGGACATAGGAGTACTTAGTGCAATATGGATGTA 1120
consensus_869#1      ------------------------------------------------------------
                                                                                 

consensus_869#0      AGACTACCATGTTTATAAGTGTACAAATTACCGTAGTGTTCCATATGGTTGCCAGACTAG 1180
consensus_869#1      ------------------------------------------------------------
                                                                                 

consensus_869#0      TACGAAGTATTTTGTTATGGAAATGCCCTAGTTATAGTCATATACTCCTATAATATATTG 1240
consensus_869#1      ------------------------------------------------------------
                                                                                 

consensus_869#0      TTCTAATGATTGTAG 1255
consensus_869#1      ---------------