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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1630 fasta sequence
[CCTCCAGTCCTCCTCGGCCTTTCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGCAGGTGCGCAAGCACGAGGGCTCGCACGGCAAGGTGGACGCGCCGCCGCCGAAGAAGCCGAGGAGCACCGAGCGGCCATTGGCACCGCTCGCCGCCGCCACGACGACCGCCAAGCCAAGGCGTGACGTGGTGAGACCCGCGGCGAGGAAATCCTCGGCTTCGAGCGATCGCGGCCCCGTCGCCCCCGGCAGCGACCTCGAGACGGAAGATTCAGATGGTCTTGGCTGCTTGACCCCTGACAGCACGAAAGCTACGCTTCAGCAGGATGATTATGGGAAAGGGGAGTACTCTCCGGGTGTGGTTCTATCTAAGACTGGTATGTTTAGGTTTGCCGGTTCTGTTGCTTTTGTGTTAATCATATTTAGTTTCCTTGCTGAGTTTTGAAAATTCTCCTTTTTATGAGGGAGATTCTGTGGTGAAGATGGCAGTAGCTGATGTACAGGACCTGCCTGTTGAAGATTTGAGGGATAATGAAGTGATCACTGTGGATAGTGAAGGCCCTGGCAAGCCTCTCCAGTCAATTCCCCTTGTTCAAGACAAGGATGCAATACAACTTGCGAGAACTTTTGTCAATGAGAAAGTCAAAGAGCTAATGGAAGGTGTCTCAGAGCCAGGAGTCCTGCAGAGTCGTTTGTCTAAAATCACCTCATTCCTTGTTCAGGCCACCTCTATAGCTGCCGGCCTCCATGATGAAGTCCCTCTACAAATACGTGGACAAACTGCTGCTTTGGTGACCCAAATCTCAGGGCTTGAGCAGCAGGTGGAGGAGCTGTCCAAGAAGCTGTGTAGCACTGAGGATGAGCTTGAGGTGACCAATGCAATGTTGAAAGAGACCCAGGCTGCCATGCTAGAGGCACAATCAGACCGAGCGACCGCCATTACTGCCATGAACAGCCTTGCCATGCGCATGGGAGCTTCATTCGCTAGGCTGGGCACAATACTGGACCCCCCACCCAATGCGGCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATATTACATCTCGATTCTATGAAATGCTCAGAGCTGCTGTTCTTCTTTTAAAAAAAAAA]
[+] EMBL AK069282 [CCTCCAGTCCTCCTCGGCCTTTCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGCAGGTGCGCAAGCACGAGGGCTCGCACGGCAAGGTGGACGCGCCGCCGCCGAAGAAGCCGAGGAGCACCGAGCGGCCATTGGCACCGCTCGCCGCCGCCACGACGACCGCCAAGCCAAGGCGTGACGTGGTGAGACCCGCGGCGAGGAAATCCTCGGCTTCGAGCGATCGCGGCCCCGTCGCCCCCGGCAGCGACCTCGAGACGGAAGATTCAGATGGTCTTGGCTGCTTGACCCCTGACAGCACGAAAGCTACGCTTCAGCAGGATGATTATGGGAAAGGGGAGTACTCTCCGGGTGTGGTTCTATCTAAGACTGGTATGTTTAGGTTTGCCGGTTCTGTTGCTTTTGTGTTAATCATATTTAGTTTCCTTGCTGAGTTTTGAAAATTCTCCTTTTTATGAGGGAGATTCTGTGGTGAAGATGGCAGTAGCTGATGTACAGGACCTGCCTGTTGAAGATTTGAGGGATAATGAAGTGATCACTGTGGATAGTGAAGGCCCTGGCAAGCCTCTCCAGTCAATTCCCCTTGTTCAAGACAAGGATGCAATACAACTTGCGAGAACTTTTGTCAATGAGAAAGTCAAAGAGCTAATGGAAGGTGTCTCAGAGCCAGGAGTCCTGCAGAGTCGTTTGTCTAAAATCACCTCATTCCTTGTTCAGGCCACCTCTATAGCTGCCGGCCTCCATGATGAAGTCCCTCTACAAATACGTGGACAAACTGCTGCTTTGGTGACCCAAATCTCAGGGCTTGAGCAGCAGGTGGAGGAGCTGTCCAAGAAGCTGTGTAGCACTGAGGATGAGCTTGAGGTGACCAATGCAATGTTGAAAGAGACCCAGGCTGCCATGCTAGAGGCACAATCAGACCGAGCGACCGCCATTACTGCCATGAACAGCCTTGCCATGCGCATGGGAGCTTCATTCGCTAGGCTGGGCACAATACTGGACCCCCCACCCAATGCGGCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATATTACATCT ]
[+] EMBL BP185024 [ acgaggCTGCTGCTTTGGTGACCCAAATCTCAGGGCTTGAGCAGCAGGTGGAGGAGCTGTCCAAGAAGCTGTGTAGCACTGAGGATGAGCTTGAGGTGACCAATGCAATGTTGAAAGAGACCCAGGCTGCCATGCTAGAGGCACAATCAGACCGAGCGACCGCCATTACTGCCATGAACAGCCTTGCCATGCGCATGGGAGCTTCATTCGCTAGGCTGGGCACAATACTGGACCCCCCACCCAATGCGGCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTC ]
[+] EMBL BP185025 [ GACAGCCCTCGTGTCTCTCCTCGGCCCTGTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATATTACATCTCGATTCTATGAAATGCTCAGAGCTGCTGTTCTTCTTTTAAAAAAAAAA]
consensusID : consensus_8691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[GCTGGNCACAATATGGACCCCCCACCNAATGCGGCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTNTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATAAAAAAAAAAAAAAAAA]
[+] EMBL AU089677 [GCTGGNCACAATATGGACCCCCCACCNAATGCGGCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTNTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATAAAAAAAAAAAAAAAAA]
consensusID : consensus_8691#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence
[GTAGTGTCCTCCTCCAGTCCTCCTCGGCCTTTCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGCAGGTGCGCAAGNGTNGTGGCTCGCACGGCAAGGTGGACGCGNCGCCGNCGAAGAAGCCGAGGAGCACCGAGCGGCCATTGGCACCGCTCGTCGNCGTCACGACGACCGCCAAGCCAAGGCGTGACGTGGTGAGACCCGCGGCGAGGAAATNCTCGGCTTNGAGCGATCGTGGNCCCGTCGTCCCCGGCAAGNGANCTCGAGACGGNAGATTCAAGATGGGTCTTGGNTTCTTTGACCCCTTGGA]
[+] EMBL OSC100791 [GTAGTGTCCTCCTCCAGTCCTCCTCGGCCTTTCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGCAGGTGCGCAAGNGTNGTGGCTCGCACGGCAAGGTGGACGCGNCGCCGNCGAAGAAGCCGAGGAGCACCGAGCGGCCATTGGCACCGCTCGTCGNCGTCACGACGACCGCCAAGCCAAGGCGTGACGTGGTGAGACCCGCGGCGAGGAAATNCTCGGCTTNGAGCGATCGTGGNCCCGTCGTCCCCGGCAAGNGANCTCGAGACGGNAGATTCAAGATGGGTCTTGGNTTCTTTGACCCCTTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8691#0 CCTCCAGTCCTCCTCGGCCTTTCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGC 60
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 AGGTGCGCAAGCACGAGGGCTCGCACGGCAAGGTGGACGCGCCGCCGCCGAAGAAGCCGA 120
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 GGAGCACCGAGCGGCCATTGGCACCGCTCGCCGCCGCCACGACGACCGCCAAGCCAAGGC 180
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 GTGACGTGGTGAGACCCGCGGCGAGGAAATCCTCGGCTTCGAGCGATCGCGGCCCCGTCG 240
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 CCCCCGGCAGCGACCTCGAGACGGAAGATTCAGATGGTCTTGGCTGCTTGACCCCTGACA 300
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 GCACGAAAGCTACGCTTCAGCAGGATGATTATGGGAAAGGGGAGTACTCTCCGGGTGTGG 360
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 TTCTATCTAAGACTGGTATGTTTAGGTTTGCCGGTTCTGTTGCTTTTGTGTTAATCATAT 420
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 TTAGTTTCCTTGCTGAGTTTTGAAAATTCTCCTTTTTATGAGGGAGATTCTGTGGTGAAG 480
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 ATGGCAGTAGCTGATGTACAGGACCTGCCTGTTGAAGATTTGAGGGATAATGAAGTGATC 540
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 ACTGTGGATAGTGAAGGCCCTGGCAAGCCTCTCCAGTCAATTCCCCTTGTTCAAGACAAG 600
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 GATGCAATACAACTTGCGAGAACTTTTGTCAATGAGAAAGTCAAAGAGCTAATGGAAGGT 660
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 GTCTCAGAGCCAGGAGTCCTGCAGAGTCGTTTGTCTAAAATCACCTCATTCCTTGTTCAG 720
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 GCCACCTCTATAGCTGCCGGCCTCCATGATGAAGTCCCTCTACAAATACGTGGACAAACT 780
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 GCTGCTTTGGTGACCCAAATCTCAGGGCTTGAGCAGCAGGTGGAGGAGCTGTCCAAGAAG 840
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 CTGTGTAGCACTGAGGATGAGCTTGAGGTGACCAATGCAATGTTGAAAGAGACCCAGGCT 900
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 GCCATGCTAGAGGCACAATCAGACCGAGCGACCGCCATTACTGCCATGAACAGCCTTGCC 960
consensus_8691#1 ------------------------------------------------------------
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 ATGCGCATGGGAGCTTCATTCGCTAGGCTGGGCACAATACTGGACCCCCCACCCAATGCG 1020
consensus_8691#1 --------------------------GCTGGNCACAATA-TGGACCCCCCACCNAATGCG 33
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 GCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCT 1080
consensus_8691#1 GCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCT 93
consensus_8691#2 --------------------------GTAG-TGTCC-TCCTCCAGTC-CTCCTCGGCCTT 31
* ** ** * **** *** ********** *
consensus_8691#0 GTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCA 1140
consensus_8691#1 GTNTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCA 153
consensus_8691#2 TCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGCAGGTGCGCAAGNGTNGTGGC- 90
* * * * * * * * * * ** ** ** * * * * * ***
consensus_8691#0 TTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGT 1200
consensus_8691#1 TTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGT 213
consensus_8691#2 TCGC-ACGGCAAGGTGGACGCGNCGCCGNC--GAAGAAGCCGAGGAGCACCGA--GCGGC 145
* ** * * ** * ** * * * * ***** * * * ** * *
consensus_8691#0 CAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCC 1260
consensus_8691#1 CAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCC 273
consensus_8691#2 CATTGGCACCGCTCGTCGNCGTC---ACGACGACCGCCAAGC---CAAGGCGTGA----C 195
** * ******* * * * * * * * * **** ** *
consensus_8691#0 ATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACC 1320
consensus_8691#1 ATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACC 333
consensus_8691#2 GTGGTGAGACCCGCGGCGAGGA------AATNCTCGGCTTNGAGCGATCGTGGNCCCGTC 249
*** * * *** * ** ** * * * *** *** *** * *
consensus_8691#0 AAAGA-GCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGT 1379
consensus_8691#1 AAAGA-GCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGT 392
consensus_8691#2 GTCCCCGGCAAGNGANCTCG-AGACGGNAGATTCAAGATGG-GTCTTGGNTTCTTTGACC 307
* ** * * * * **** * * * * ** * ** *
consensus_8691#0 TAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGT 1439
consensus_8691#1 TAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGT 452
consensus_8691#2 CCTTGGA----------------------------------------------------- 314
* *
consensus_8691#0 ATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGG 1499
consensus_8691#1 ATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGG 512
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 CAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTC 1559
consensus_8691#1 CAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTC 572
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 TAACTTGTTTACATATTACATCTCGATTCTATGAAATGCTCAGAGCTGCTGTTCTTCTTT 1619
consensus_8691#1 TAACTTGTTTACATAAAAAAAAAAAAAAAAA----------------------------- 603
consensus_8691#2 ------------------------------------------------------------
consensus_8691#0 TAAAAAAAAAA 1630
consensus_8691#1 -----------
consensus_8691#2 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||