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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1137 fasta sequence
[TCGCCCACCCCTTCCGCTTTCCGCCGCCGCCGCCGCCGCAGCAGCAGCCATGTCGTCGTCCGCCACCGGCGTGAACGTCTCCGACCGTCCGATTTCCCCGGACACCACCCGCGTCGCCTGGGTCGGGACGGGCGTCATGGGCCAATCCATGGCCGGCCACCTCCTCGCCGCCGGCTACGCGCTCACTGTCTACAACCGCACGGCCTCCAAGGCCGAGGGGCTCGTCTCCCGGGGAGCCACCCTCGCGGAAAGCCCGCGCGCGGCCGCCGCCGCAGCCGATGTCATCTTCCTCATGGTCGGCTTCTCCTCCGACGTCCGCTCCACCTCCCTCGACCCCTCCACGGGTGCCCTCGCCGGCCTCGCCCCAGGCGGATTGCTCGTCGACATGACCACTTCCGACCCCACCCTCGCCGCGGAGATCGCCGAGGCCGCGGCCGCCAAAAGCTGCGCCGCCGTCGACGCCCCGGTCTCCGGCGGCGACCGCGGGGCCCGCAGCGCGACGCTCTCCATCTTCGCCGGCGGCGACGCGGCCGTGGTCGCCCGCCTGGCGCCCCTGTTCAAGCTGATGGGGAACGCGCTGTACATGGGCGGGCCGGGCGCCGGGCAGCGCGCGAAGCTGGGCAACCAGATCGCGATCGCGTCCACCATGGTCGGGCTGGTGGAGGGCATGGTGTACGCGCACAAGGCCGGGCTGGACGTGGCGAAGTGGCTGGAGGCCATCTCCACGGGCGCGGCGGGGTCCAAGTCGCTGGACCTGTACGGGAAGCGGATGCTGGAGCGGGACATGGCGGCCGGGTTCTACGTGCGCCACTTCGTCAAGGACCTCGGGATCTGCCTGTCGGAGTGCCAGGCCATGGGGCTGGCGCTGCCGGGGCTCGCGCTCGCGCACCAGCTCTACGTGTCGCTGCTCGCGCACGGCGAGGGCGGCCTCGGCACGCAGGCGCTCATCCTCGCCATCGAGCGGCTCAACAACACCTGCCTTGACAAGAAACCGGAGTGAGCTCTGCTCAGGCTCAGCTCGGTTAGATGTGTTCGATCGTGTAATGGAATGGTTGGATGATTGCTTCGCTCTGTCTGTTTACAGTACAGTGGTTAAAAGATTCAGATCAATAAAAGAAGCATACGTGGTGTTTCACC]
[+] EMBL AK065837 [TCGCCCACCCCTTCCGCTTTCCGCCGCCGCCGCCGCCGCAGCAGCAGCCATGTCGTCGTCCGCCACCGGCGTGAACGTCTCCGACCGTCCGATTTCCCCGGACACCACCCGCGTCGCCTGGGTCGGGACGGGCGTCATGGGCCAATCCATGGCCGGCCACCTCCTCGCCGCCGGCTACGCGCTCACTGTCTACAACCGCACGGCCTCCAAGGCCGAGGGGCTCGTCTCCCGGGGAGCCACCCTCGCGGAAAGCCCGCGCGCGGCCGCCGCCGCAGCCGATGTCATCTTCCTCATGGTCGGCTTCTCCTCCGACGTCCGCTCCACCTCCCTCGACCCCTCCACGGGTGCCCTCGCCGGCCTCGCCCCAGGCGGATTGCTCGTCGACATGACCACTTCCGACCCCACCCTCGCCGCGGAGATCGCCGAGGCCGCGGCCGCCAAAAGCTGCGCCGCCGTCGACGCCCCGGTCTCCGGCGGCGACCGCGGGGCCCGCAGCGCGACGCTCTCCATCTTCGCCGGCGGCGACGCGGCCGTGGTCGCCCGCCTGGCGCCCCTGTTCAAGCTGATGGGGAACGCGCTGTACATGGGCGGGCCGGGCGCCGGGCAGCGCGCGAAGCTGGGCAACCAGATCGCGATCGCGTCCACCATGGTCGGGCTGGTGGAGGGCATGGTGTACGCGCACAAGGCCGGGCTGGACGTGGCGAAGTGGCTGGAGGCCATCTCCACGGGCGCGGCGGGGTCCAAGTCGCTGGACCTGTACGGGAAGCGGATGCTGGAGCGGGACATGGCGGCCGGGTTCTACGTGCGCCACTTCGTCAAGGACCTCGGGATCTGCCTGTCGGAGTGCCAGGCCATGGGGCTGGCGCTGCCGGGGCTCGCGCTCGCGCACCAGCTCTACGTGTCGCTGCTCGCGCACGGCGAGGGCGGCCTCGGCACGCAGGCGCTCATCCTCGCCATCGAGCGGCTCAACAACACCTGCCTTGACAAGAAACCGGAGTGAGCTCTGCTCAGGCTCAGCTCGGTTAGATGTGTTCGATCGTGTAATGGAATGGTTGGATGATTGCTTCGCTCTGTCTGTTTACAGTACAGTGGTTAAAAGATTCAGATCAATAAAAGAAGCATAC ]
[+] EMBL AK071100 [ CCACCCCTTCCGCTTTCCGCCGCCGCCGCCGCCGCAGCAGCAGCCATGTCGTCGTCCGCCACCGGCGTGAACGTCTCCGACCGTCCGATTTCCCCGGACACCACCCGCGTCGCCTGGGTCGGGACGGGCGTCATGGGCCAATCCATGGCCGGCCACCTCCTCGCCGCCGGCTACGCGCTCACTGTCTACAACCGCACGGCCTCCAAGGCCGAGGGGCTCGTCTCCCGGGGAGCCACCCTCGCGGAAAGCCCGCGCGCGGCCGCCGCCGCAGCCGATGTCATCTTCCTCATGGTCGGCTTCCCCTCCGACGTCCGCTCCACCTCCCTCGACCCCTCCACGGGTGCCCTCGCCGGCCTCGCCCCAGGCGGATTGCTCGTCGACATGACCACTTCCGACCCCACCCTCGCCGCGGAGATCGCCGAGGCCGCGGCCGCCAAAAGCTGCGCCGCCGTCGACGCCCCGGTCTCCGGCGGCGACCGCGGGGCCCGCAGCGCGACGCTCTCCATCTTCGCCGGCGGCGACGCGGCCGTGGTCGCCCGCCTGGCGCCCCTGTTCAAGCTGATGGGGAACGCGCTGTACATGGGCGGGCCGGGCGCCGGGCAGCGCGCGAAGCTGGGCAACCAGATCGCGATCGCGTCCACCATGGTCGGGCTGGTGGAGGGCATGGTGTACGCGCACAAGGCCGGGCTGGACGTGGCGAAGTGGCTGGAGGCCATCTCCACGGGCGCGGCGGGGTCCAAGTCGCTGGACCTGTACGGGAAGCGGATGCTGGAGCGGGACATGGCGGCCGGGTTCTACGTGCGCCACTTCGTCAAGGACCTCGGGATCTGCCTGTCAGAGTGCCAGGCCATGGGGCTGGCGCTGCCGGGGCTCGCGCTCGCGCACCAGCTCTACGTGTCGCTGCTCGCGCACGGCGAGGGCGGCCTCGGCACGCAGGCGCTCATCCTCGCCATCGAGCGGCTCAACAACACCTGCCTTGACAAGAAACCGGAGTGAGCTCTGCTCAGGCTCAGCTCGGTTAGATGTGTTCGATCGTGTAATGGAATGGTTGGATGATTGCTTCGCTCTGTCTGTTTACAGTACAGTGGTTAAAAGATTCAGATCAATAAAAGAAGCATACGTGGTGTTTCACC]
[+] EMBL AU197283 [ CCACCCCTTCCGCTTTCCGCCGCCGCCGCCGCCGCAGCAGCAGCCATGTCGTCGTCCGCCACCGGCGTGAACGTCTCCGACCGTCCGATTTCCCCGGACACCACCCGCGTCGCCTGGGTCGGGACGGGCGTCATGGGCCAATCCATGGCCGGCCACCTCCTCGCCGCCGGCTACGCGCTCACTGTCTACAACCGCACGGCCTCCAAGGCCGAGGGGCTCGTCTCCCGGGGAGCCACCCTCGCGGA ]
consensusID : consensus_8695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1027 fasta sequence
[CGGTAAATGTGACAAATAAAAAAATATCACTGCTATTTACGTCATTATATAGATGCCACTGAAACTTTTTTAAATTGAAACCATGCCACTCCGTCACCCTTCCCGTCCTCCCCCGCCACTCTTTCCGTCCTCTCTCGTCCTCTCTTCACGCCGCATATCGCCGCTGCCGGGAGGGGAGCATGAGCAGCGAGAAGGGGCTCCACGAGCTCGGCCCCAGCGGCGCACGCGCGGGGAGGCTCGCCTTGGAGTACTCGACGAACGCCCGGAAATCGACGGATCATGTGGTGAAGAGGAAGGCGAGGACATGGGAGGCGGAGAGCGCGCAGAGGACGACGAGGGCGTCGGTGAAGTCGAGCGTCAGGACCACGACCACCAGCCAGAGCGCGTAGAGCACGGAGTAGGTCGACGCCCAGTGCCGCCACCGAAGCAGGTCCACGCCCTCCACCAACTTACCGCCCACCTCAAATCGCGCCATGCCGGTGCCGTAGATCGGGGCGGGAGAGCGGCGAGGTCGTCGGGGGGAGGGGGCGAGCTCAGATCGGGATTCTCTCCCCGTCCTCCTCCTCTGCCGCCGCCCCGGCGATGGTCCCTCCCGGTCCCTCGTTCGCAGTCGCCAACCCCTTCCACTTGCTACCGTCGTCCACCACCGGCACGAACGTCATGGGCCAGTCCATGGCCAGTCACCTCCTCGCTGCCGGGGCGCCACCCTCGCGAAAAGCCCGTGCGCGGCCGCCGTCGCAGCCGATGTCATCTTCCTCATGGTCGGCTTCCCCTCTGACGTCTGCTCCACCTCCCTCACCCCTCCACGGGCGCCCTCGTCGGCCTCGCCCCAGGCGGCGCGCTCGTCGACATGACCACCTCCGACCCCACCCTCGCCACGGAGATTGCCGAGGTCACGGCCGATAAAGGCCGGTCTCCGGCGGCGACCGTGGGGCCCGCAAGGCGACGCTCTCCATCTTCGCTGGCGGCGACACAGCCGTGGTCGCCCGCCTCACGCCCCTGTTCAAGCTAATGGGGAACGCACTGT]
[-] EMBL AK110607 [CGGTAAATGTGACAAATAAAAAAATATCACTGCTATTTACGTCATTATATAGATGCCACTGAAACTTTTTTAAATTGAAACCATGCCACTCCGTCACCCTTCCCGTCCTCCCCCGCCACTCTTTCCGTCCTCTCTCGTCCTCTCTTCACGCCGCATATCGCCGCTGCCGGGAGGGGAGCATGAGCAGCGAGAAGGGGCTCCACGAGCTCGGCCCCAGCGGCGCACGCGCGGGGAGGCTCGCCTTGGAGTACTCGACGAACGCCCGGAAATCGACGGATCATGTGGTGAAGAGGAAGGCGAGGACATGGGAGGCGGAGAGCGCGCAGAGGACGACGAGGGCGTCGGTGAAGTCGAGCGTCAGGACCACGACCACCAGCCAGAGCGCGTAGAGCACGGAGTAGGTCGACGCCCAGTGCCGCCACCGAAGCAGGTCCACGCCCTCCACCAACTTACCGCCCACCTCAAATCGCGCCATGCCGGTGCCGTAGATCGGGGCGGGAGAGCGGCGAGGTCGTCGGGGGGAGGGGGCGAGCTCAGATCGGGATTCTCTCCCCGTCCTCCTCCTCTGCCGCCGCCCCGGCGATGGTCCCTCCCGGTCCCTCGTTCGCAGTCGCCAACCCCTTCCACTTGCTACCGTCGTCCACCACCGGCACGAACGTCATGGGCCAGTCCATGGCCAGTCACCTCCTCGCTGCCGGGGCGCCACCCTCGCGAAAAGCCCGTGCGCGGCCGCCGTCGCAGCCGATGTCATCTTCCTCATGGTCGGCTTCCCCTCTGACGTCTGCTCCACCTCCCTCACCCCTCCACGGGCGCCCTCGTCGGCCTCGCCCCAGGCGGCGCGCTCGTCGACATGACCACCTCCGACCCCACCCTCGCCACGGAGATTGCCGAGGTCACGGCCGATAAAGGCCGGTCTCCGGCGGCGACCGTGGGGCCCGCAAGGCGACGCTCTCCATCTTCGCTGGCGGCGACACAGCCGTGGTCGCCCGCCTCACGCCCCTGTTCAAGCTAATGGGGAACGCACTGT]
consensusID : consensus_8695#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence
[AACGCCCGGAAGTCGACAAACCGTGCAGTGAAGAGGAAGGCGAGGACATGGGAGGCAGAGAGCGCGCAGAGGACGACGAGGGCGTCGGTGAAGTCGAGCGTCAGGACCACAACCACCAGCTAGAACGCGTAGAGCACGGAGCAGGTCCACGCCCTCTACCAACTTACCGTCCACCTCGGC]
[+] EMBL AW070067 [AACGCCCGGAAGTCGACAAACCGTGCAGTGAAGAGGAAGGCGAGGACATGGGAGGCAGAGAGCGCGCAGAGGACGACGAGGGCGTCGGTGAAGTCGAGCGTCAGGACCACAACCACCAGCTAGAACGCGTAGAGCACGGAGCAGGTCCACGCCCTCTACCAACTTACCGTCCACCTCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8695#1 ------------------------------------------------------------
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 TCGCCCACCCCTTCCGCTTTCCGCCGCCGCCGCCGCCGCAGCAGCAGCCATGTCGTCGTC 60
consensus_8695#1 ------------------------------------------------------------
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 CGCCACCGGCGTGAACGTCTCCGACCGTCCGATTTCCCCGGACACCACCCGCGTCGCCTG 120
consensus_8695#1 -CGGTAAATGTGACAAATAAAAAAATATCACTGCTATTTACGTCATTATATAGATGCCAC 59
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 GGTCGGGACGGGCGTCATGGGCCAATCCATGGCCGGCCACCTCCTCGCCGCCGGCTACGC 180
consensus_8695#1 TGAAACTTTTTTAAATTGAAACCATGCCACTCCGTCACCCTTCCCGTCCTCCCCCGCCAC 119
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 GCTCACTGTCTACAACCGCACGGCCTCCAAGGCCGAGGGGCTCGTCTCCCGGGGAGCCAC 240
consensus_8695#1 TCTTTCCGTCCTCTCTCGTCCTCTCTTCAC-GCCGCATATCGCCGCTGCCGGGAGGGGAG 178
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 CCTCGCGGAAAGCCCGCGCGCGGCCGCCGCCGCAGCCGATGTCATCTTCCTCATGGTCGG 300
consensus_8695#1 CATGAGCAGCGAGAAGGGGCTCCACGAGCTCGGCCCCAGCGGCGCACGCGCGGGGAGGCT 238
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 CTTCTCCTCCGACGTCCGCTCCACCTCCCTCGACCCCTCCACGGGTGCCCTCGCCGGCCT 360
consensus_8695#1 CGCCTTGGAGTACTCGACGAACGCCCGGAAATCGACGGATCATGT----GGTGAAGAGGA 294
consensus_8695#2 -------------------AACGCCCGGAAGTCGACAAACCGTGC----AGTGAAGAGGA 37
consensus_8695#0 CGCCCCAGGCGGATTGCTCGTCGACATGACCACTTCCGACCCCACCCTCGCCGCGGAGAT 420
** * ** * * * * * ***
consensus_8695#1 AGGCGAGGACATGGGAGGCGGAGAGCGCGCAGAGGACGACGAGGGCGTCGGTGAAGTCGA 354
consensus_8695#2 AGGCGAGGACATGGGAGGCAGAGAGCGCGCAGAGGACGACGAGGGCGTCGGTGAAGTCGA 97
consensus_8695#0 CGCCGAGGCCGCGGCCGCCAAAAGCTGCGCCGCCGTCGACGCCCCGGTCTCCGGCGGCGA 480
* ***** * ** * * * **** * * ***** *** * * ***
consensus_8695#1 GCGTCAGGACCACGACCACCAGCCAGAGCGCGTAGAGCACGGAGTAGGTCGACGCCCAGT 414
consensus_8695#2 GCGTCAGGACCACAACCACCAGCTAGAACGCGTAGAGCACGGAG---------------- 141
consensus_8695#0 CCGCGGGGCCCGCAGCGCGACGCTCTCCATCTTCGCCGGCGGCG-ACGCGGCCGTGGTCG 539
** ** ** * * ** * * * *** *
consensus_8695#1 GCCGCCACCGAAGCAGGTCCACGCCCTCCACCAACTTACCGCCCACC--TCAAATCGCGC 472
consensus_8695#2 -------------CAGGTCCACGCCCTCTACCAACTTACCGTCCACC--TCGGC------ 180
consensus_8695#0 CCCGCCTGGCGCCCCTGTTCAAGCTGATGGGGAACGCGCTGTACATGGGCGGGCCGGGCG 599
* ** ** ** *** * * **
consensus_8695#1 CATGCCGGTGCCGTAGATCGGGGCGGGAGAGCGGCGAGGTCGTCGGGGGGAGGGGGCGAG 532
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 CCGGGCAGCGCGCGAAGCTGGGCAACCAGATCGCGATCGCGTCCACCATGGTCGGGCTGG 659
consensus_8695#1 CTCAGATCGGGATTCTCTCCCCGTCCTCCTCCTCTGCCGCCGCCCCGGCGATGGTCCCTC 592
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 TGGAGGGCATGGTGTACGCGCACAAGGCCGGGCTGGACGTGGCGAAGTGGCTGGAGGCCA 719
consensus_8695#1 CCGGTCCCTCGTTCGCAGTCGCCAACCCCTTCCACTTGCTACCGTCGTCCACCACCGGCA 652
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 TCTCCACGGGCGCGGCGGGGTCCAAGTCGCTGGACCTGTACGGGAAGCGGATGCTGGAGC 779
consensus_8695#1 CGAACGTCATGGGCCAGTCCATGGCCAGTCACCTCCTCGCTGCCGGGGCGCCACCCTCGC 712
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 GGGACATGGCGGCCGGGTTCTACGTGCGCCACTTCGTCAAGGACCTCGGGATCTGCCTGT 839
consensus_8695#1 GAAAAGCCCGTGCGCGGCCGCCGTCGCAGCCGATGTCATCTTCCTCATGGTCGGCTTCCC 772
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 CGGAGTGCCAGGCCATGGGGCTGGCGCTGCCGGGGCTCGCGCTCGCGCACCAGCTCTACG 899
consensus_8695#1 CTCTGACGTCTGCTCCACCTCCCTCACCCCTCCACGGGCGCCCTCGTCGGCCTCGCCCCA 832
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 TGTCGCTGCTCGCGCACGGCGAGGGCGGCCTCGGCACGCAGGCGCTCATCCTCGCCATCG 959
consensus_8695#1 GGCGGCGCGCTCGTCGACATGACCACCTCCGACCCCACCCTCGCCACGGAGATTGCCGAG 892
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 AGCGGCTCAACAACACCTGCCTTGACAAGAAACCGGAGTGAGCTCTGCTCAGGCTCAGCT 1019
consensus_8695#1 GTCACGGCCGATAAAGGCCGGTCTCCGGCGGCGACCGTGGGGCCCGCAAGGCGACGCTCT 952
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 CGGTTAGATGTGTTCGATCGTGTAATGGAATGGTTGGATGATTGCTTCGCTCTGTCTGTT 1079
consensus_8695#1 CCATCTTCGCTGGCGGCGACACAGCCGTGGTCGCCCGCCTCACGCCCCTGTTCAAGCTAA 1012
consensus_8695#2 ------------------------------------------------------------
consensus_8695#0 TACAGTACAGTGGTTAAAAGATTCAGATCAATAAAAGAAGCATACGTGGTGTTTCACC-- 1137
consensus_8695#1 TGGGGAACGCACTGT 1027
consensus_8695#2 ---------------
consensus_8695#0 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||