cluster # 8697

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Oryza sativa
cluster # 8697 cluster # 8697 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8697#0 length = 549 sequences # 3

consensus_8697#1 length = 449 sequences # 1
consensus_8697#2 length = 432 sequences # 1

consensusID : consensus_8697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 549
fasta sequence

                              [AACCCCTCCAGTACCGGTCCCGATTTCCCGGTCGACCCACGCGTCCCTGACACAAAAGTTTGTCAACACAACCCCCCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTCCCACCGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCAACGGCGGCGCCGGCGCCAAGGGAAAGAGCGGCGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTAC-AATTTATGTAAAAAAAAAA]

[+] EMBL BI795910             [AACCCCTCCAGTACCGGTCCCGATTTCCCGGTCGACCCACGCGTCCCTGACACAAAAGTTTGTCAACACAACCCCCCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTCCCACCGTCTCGTCCCCCACGCTCGTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCTGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAA GCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCAACGGCGGCGCCGGCGCCAAGGGAAAGAGCGGCGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTAC AATTTATGTAAAAAAAAAA]
[+] EMBL C73202               [                                                                          cgCTGCTTCTAGATACTTCTTCCTCCATTTNTTTCCTCCTTGCCACCGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGGGNGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTNAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCAACGGCGGCG CNGCGCCAAGGGAAAGAGCGGCGGGAAGAAGTAGGCAT                                                                                                                                                                     ]
[+] EMBL AU172651             [                                                                                                                        CGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCAACGGCGGCGCCGGCGCCAAGGGAAAGAGCGGCGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCTGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAAAAA     ]




>consensus_8697#0
AACCCCTCCAGTACCGGTCCCGATTTCCCGGTCGACCCACGCGTCCCTGACACAAAAGTT
TGTCAACACAACCCCCCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTCCCAC
CGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGAC
CAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTGAAGGGGCGCGAC
GACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCG
GCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCAACGGCGGCGCCGGCGCCAAGGGA
AAGAGCGGCGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCTGTTCTCACCTCA
CGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCA
TGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAATTTATGTA
AAAAAAAAA

consensusID : consensus_8697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [TCACGACACAAAAGTTTGTCAACAGCAGCCGCCCGCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTGCCACCGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCTGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAGA]

[+] EMBL AK063349             [TCACGACACAAAAGTTTGTCAACAGCAGCCGCCCGCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTGCCACCGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCACCGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCTGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAGA]




>consensus_8697#1
TCACGACACAAAAGTTTGTCAACAGCAGCCGCCCGCTGCTTCTAGATACTTCTTCCTCCA
TTTCTTTCCTCCTTGCCACCGTCTCGTCCCCCACGCTCTTGCGACCTCTTATAATTTCAC
CGCTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCC
GGTTGTGAAGGGGCGCGACGACGGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAA
GGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGGGCGGCATATG
CCGGCATTTGATCTGTTCTCACCTCACGTCTGGTTGCGTGTGACAACACCGTTCTTTCGA
TCGTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCT
TTGGAAATTGCATTACAAATTTATGTAGA

consensusID : consensus_8697#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GCTCTGTGCGACCTCTTATAATTTCACCGTCTATGACTCGCGGCGACCAGAGGGACCGGGACAGCAGAGGGCGCAGGCTGCGTGAAGCCTGTTGTGAAGGGGCAGCTGACGACGGGTCTCACGCCGGAGCAGCACCAGCGAGAGGGACGCCAAGGCAGCTGCAGGAGAAGCAGCCCAGGAAGCAGGCACAGCCCACCGGGCAGGCGCAACGCGGCACCAGGCACCAAGGGAAAGAGCGCGCAGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCGTGTTCTCACCTCACAGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAGATTGTGAAACAAAAAA]

[+] EMBL BI796651             [GCTCTGTGCGACCTCTTATAATTTCACCGTCTATGACTCGCGGCGACCAGAGGGACCGGGACAGCAGAGGGCGCAGGCTGCGTGAAGCCTGTTGTGAAGGGGCAGCTGACGACGGGTCTCACGCCGGAGCAGCACCAGCGAGAGGGACGCCAAGGCAGCTGCAGGAGAAGCAGCCCAGGAAGCAGGCACAGCCCACCGGGCAGGCGCAACGCGGCACCAGGCACCAAGGGAAAGAGCGCGCAGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCGTGTTCTCACCTCACAGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAGATTGTGAAACAAAAAA]




>consensus_8697#2
GCTCTGTGCGACCTCTTATAATTTCACCGTCTATGACTCGCGGCGACCAGAGGGACCGGG
ACAGCAGAGGGCGCAGGCTGCGTGAAGCCTGTTGTGAAGGGGCAGCTGACGACGGGTCTC
ACGCCGGAGCAGCACCAGCGAGAGGGACGCCAAGGCAGCTGCAGGAGAAGCAGCCCAGGA
AGCAGGCACAGCCCACCGGGCAGGCGCAACGCGGCACCAGGCACCAAGGGAAAGAGCGCG
CAGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATCGTGTTCTCACCTCACAGTCG
GGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGCTCCTGATCCTGCCCATGTTG
CAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTACAAATTTATGTAGATTG
TGAAACAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8697#0      AACCCCTCCAGTACCGGTCCCGATTTCCCGGTCGACCCACGCGTCCCTGACACAAAAGTT 60
consensus_8697#1      --------------------------------------------TCACGACACAAAAGTT 16
consensus_8697#2      ------------------------------------------------------------
                                                                                  

consensus_8697#0      TGTCAACA-CAACCCCCC--TGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTCC 117
consensus_8697#1      TGTCAACAGCAGCCGCCCGCTGCTTCTAGATACTTCTTCCTCCATTTCTTTCCTCCTTGC 76
consensus_8697#2      ------------------------------------------------------------
                                                                                  

consensus_8697#0      CACCGTCTCGTCCCCCACGCTCT-TGCGACCTCTTATAATTTCACCG-CTATGACTCGCG 175
consensus_8697#1      CACCGTCTCGTCCCCCACGCTCT-TGCGACCTCTTATAATTTCACCG-CTATGACTCGCG 134
consensus_8697#2      ------------------GCTCTGTGCGACCTCTTATAATTTCACCGTCTATGACTCGCG 42
                                        ***** *********************** ************

consensus_8697#0      GCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGC-GCG-GAAGCCGGTTGTGAAGGG 233
consensus_8697#1      GCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGC-GCG-GAAGCCGGTTGTGAAGGG 192
consensus_8697#2      GCGACCAGAGGGACCGGGACAG-CAGAGGGCGCAGGCTGCGTGAAGCCTGTTGTGAAGGG 101
                      ************* ******** ************** *** ****** ***********

consensus_8697#0      GCG--CGACGACGGG-CTCACGCCGGAGCAGCGCC-GCGAGAGGGACGCCAAGGC-GCTG 288
consensus_8697#1      GCG--CGACGACGGG-CTCACGCCGGAGCAGCGCC-GCGAGAGGGACGCCAAGGC-GCTG 247
consensus_8697#2      GCAGCTGACGACGGGTCTCACGCCGGAGCAGCACCAGCGAGAGGGACGCCAAGGCAGCTG 161
                      **    ********* **************** ** ******************* ****

consensus_8697#0      CAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGG-GCGGCAACGGCGGCGC 347
consensus_8697#1      CAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCACCGGGCAGG-GCGGCA---------- 296
consensus_8697#2      CAGGAGAAGCAGCCCAGGAAGCAGGCACAGCCCACCGGGCAGGCGCAACG-CGGCACCAG 220
                      *********  * ********  *** *** ************ **  *           

consensus_8697#0      CGGCGCCAAGGGAAAGAGCGGCGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATC 407
consensus_8697#1      -------------------------------------------TATGCCGGCATTTGATC 313
consensus_8697#2      GCACCAAGGGAAAGAGCGCGCAGGGAAGAAGTAGGCATCGGCATATGCCGGCATTTGATC 280
                                                                 *****************

consensus_8697#0      -TGTTCTCACCTCAC-GTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGC 465
consensus_8697#1      -TGTTCTCACCTCAC-GTCTGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGC 371
consensus_8697#2      GTGTTCTCACCTCACAGTCGGGTTGCGTGTGACAACACCGTTCTTTCGATCGTCATCTGC 340
                       ************** *** ****************************************

consensus_8697#0      TCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGC 525
consensus_8697#1      TCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGC 431
consensus_8697#2      TCCTGATCCTGCCCATGTTG-CAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGC 399
                      ******************** ***************************************

consensus_8697#0      ATTACAA-TTTATGTAAAAAAAAAA-------- 549
consensus_8697#1      ATTACAAATTTATGTAGA--------------- 449
consensus_8697#2      ATTACAAATTTATGTAGATTGTGAAACAAAAAA 432
                      ******* ******** *