These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 995 fasta sequence [CGACCTCGCCCTCTCCCGCCACCGCTGGGAGCGCCTCCCCGACATGCGCGTCCCGCGAGGGAGCTTCGCCTGCGCCCCCGCGCCCAGCGGCGGAGTCATCGTGGCCGGAGGTGGCTCCAGGCACCCGACGTTCCCCTCCTACGGCAGCCGCACCAGCGGCGTCGAGTTGTACGACGCCGCAGCGCGCGCGTGGCGCGTCACCGCGGCGATGCCCAGGGACCGGGCCGGGTGCGTGGGGTTCGTCGCGCACGGGGCGGGGGATGGGAGGGAGGATGAGTTCTGGGTGATGGGCGGGTACGACGGCTACACCACGGTGGGGGGAGTGGTGCCTAGTGACGTATACTGCCGGGACGCGGTGGCGCTCGGGCTGTGGAGCGGCAAGTGGAGGGAGATTGGGGACATGTGGGAGGAATGGGAGAGAGAGCGCCTTGGGCCGGTGGCTGTCATTTCTGCTGAAGATGGAAGGGTCACAGAGGTGTTCATGCTCGATGGTCATGATATCTTCAGGTATAACTTCTCTTCGAACAGTTGGTCAAAGGAAGCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTTTCATAGCAATGAATGGCGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAACCTCAAGTCCATGGAAGCAGTCGAAGAAGAGGTTGGCGCTGGAGTTTCAAGTTTACAACCCTGCAGCAAAGATGTGGAGGGTGCTCACCACACATCCCCCTGTTAACGTACCAATTGATTTCAGGACTGCAGCTCTCTGTACGGTTGAGCTGTAGGTTTCTTGATGATCACCATTCACTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCAAATTTAGATGTAAATGAGAACACCATCCAATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGAC] [+] EMBL AK105757 [CGACCTCGCCCTCTCCCGCCACCGCTGGGAGCGCCTCCCCGACATGCGCGTCCCGCGAGGGAGCTTCGCCTGCGCCCCCGCGCCCAGCGGCGGAGTCATCGTGGCCGGAGGTGGCTCCAGGCACCCGACGTTCCCCTCCTACGGCAGCCGCACCAGCGGCGTCGAGTTGTACGACGCCGCAGCGCGCGCGTGGCGCGTCACCGCGGCGATGCCCAGGGACCGGGCCGGGTGCGTGGGGTTCGTCGCGCACGGGGCGGGGGATGGGAGGGAGGATGAGTTCTGGGTGATGGGCGGGTACGACGGCTACACCACGGTGGGGGGAGTGGTGCCTAGTGACGTATACTGCCGGGACGCGGTGGCGCTCGGGCTGTGGAGCGGCAAGTGGAGGGAGATTGGGGACATGTGGGAGGAATGGGAGAGAGAGCGCCTTGGGCCGGTGGCTGTCATTTCTGCTGAAGATGGAAGGGTCACAGAGGTGTTCATGCTCGATGGTCATGATATCTTCAGGTATAACTTCTCTTCGAACAGTTGGTCAAAGGAAGCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTCTCATAGCAATGAATGGCGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAACCTCAAGTCCATGGAAGCAGTCGAAGAAGAGGTTGGCGCTGGAGTTTCAAGTTTACAACCCTGCAGCAAAGATGTGGAGGGTGCTCACCACACATCCCCCTGTTAACGTACCAATTGATTTCAGGACTGCAGCTCTCTGTACGGTTGAGCTGTAGGTTTCTTGATGATCACCATTCACTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCAAATTTAGATGTAAATGAGAACACCATCCAATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATGATCTAATAAAAAGGAC] [+] EMBL AK073932 [CGACCTCGCCCTCTCCCGCCACCGCTGGGAGCGCCTCCCCGACATGCGCGTCCCGCGAGGGAGCTTCGCCTGCGCCCCCGCGCCCAGCGGCGGAGTCATCGTGGCCGGAGGTGGCTCCAGGCACCCGACGTTCCCCTCCTACGGCAGCCGCACCAGCGGCGTCGAGTTGTACGACGCCGCAGCGCGCGCGTGGCGCGTCACCGCGGCGATGCCCAGGGACCGGGCCGGGTGCGTGGGGTTCGTCGCGCACGGGGCGGGGGATGGGAGGGAGGATGAGTTCTGGGTGATGGGCGGGTACGACGGCTACACCACGGTGGGGGGAGTGGTGCCTAGTGACGTATACTGCCGGGACGCGGTGGCGCTCGGGCTGTGGAGCGGCAAGTGGAGGGAGATTGGGGACATGTGGGAGGAATGGGAGAGAGAGCGCCTTGGGCCGGTGGCTGTCATTTCTGCTGAAGATGGAAGGGTCACAGAGGTGTTCATGCTCGATGGTCATGATATCTTCAGGTATAACTTCTCTTCGAACAGTTGGTCAAAGGAAGCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTTTCATAGCAATGAATGGCGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAACCTCAAGTCCATGGAAGCAGTCGAAGAAGAGGTTGGCGCTGGAGTTTCAAGTTTACAACCCTGCAGCAAAGATGTGGAGGGTGCTCACCACACATCCCCCTGTTAACGTACCAATTGATTTCAGGACTGCAGCTCTCTGTACGGTTGAGCTGTAGGTTTCTTGATGATCACCATTCACTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCAAATTTAGATGTAAATGAGAACACCATCCAATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGAC] [+] EMBL CF305065 [ AGAGCGCCTTGGGCCGGTGGCTGTCATTTCTGCTGAAGATGGAAGGGTCACAGAGGTGTTCATGCTCGATGGTCATGATATCTTCAGGTATAACTTCTCTTCGAACAGTTGGTCAAAGGAAGCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTTTCATAGCAATGAATGGCGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAACCTCAAGTCCATGGAAGCAGTCGAAGAAGAGGTTGGCGCTGGAGTTTCAAGTTTACAACCCTGCAGCAAAGATGTGGAGGGTGCTCACCACACATCCCCCTGTTAACGTACCAATTGATTTCAGGACTGCAGCTCTCTGTACGGTTGAGCTGTAGGTTTCTTGATGATCACCATTCACTGTAC ] [+] EMBL CB685194 [ AGGACCCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTTTCATAGCAATGAATGGCGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAACCTCAAGTCCATGGAAGCAGTCGAAGAAGAGGTTGGCGCTGGAGTTTCAAGTTTACAACCCTGCAGCAAAGATGTGGAGGGTGCTCACCACACATCCCCCTGTTAACGTACCAATTGATTTCAGGACTGCAGCTCTCTGTACGGTTGAGCTGTAGGTTTCTTGATGATCACCATTCACTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCAAATTTAGATGTAAATGAGAACACCATCCAATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGAC] consensusID : consensus_8701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TTCCGAAAACCCTCAAGTCCCACTGGAAGCCAGTTCGAAGAAGAGGTTGGCCGCCTGGAGTTTCCAAGTTTACAACCCCTGCAGCCACAAGATTGTTGGAGGGGTGCTCACCCACCACCATCCCCCTGTTAACGTACCCACATTGATTTCAGGACTGCAGCTCTCTGTACCGGTTGAGCCTGTAGGTTTCTTGATGATCACCCATTCACCTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCACAATTTAGATGTAACTGAGAACNCCATCCCATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGACGGTACATTGCAAAGAG] [+] EMBL BQ906001 [TTCCGAAAACCCTCAAGTCCCACTGGAAGCCAGTTCGAAGAAGAGGTTGGCCGCCTGGAGTTTCCAAGTTTACAACCCCTGCAGCCACAAGATTGTTGGAGGGGTGCTCACCCACCACCATCCCCCTGTTAACGTACCCACATTGATTTCAGGACTGCAGCTCTCTGTACCGGTTGAGCCTGTAGGTTTCTTGATGATCACCCATTCACCTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCACAATTTAGATGTAACTGAGAACNCCATCCCATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCATTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGACGGTACATTGCAAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8701#0 CGACCTCGCCCTCTCCCGCCACCGCTGGGAGCGCCTCCCCGACATGCGCGTCCCGCGAGG 60 consensus_8701#1 ------------------------------------------------------------ consensus_8701#0 GAGCTTCGCCTGCGCCCCCGCGCCCAGCGGCGGAGTCATCGTGGCCGGAGGTGGCTCCAG 120 consensus_8701#1 ------------------------------------------------------------ consensus_8701#0 GCACCCGACGTTCCCCTCCTACGGCAGCCGCACCAGCGGCGTCGAGTTGTACGACGCCGC 180 consensus_8701#1 ------------------------------------------------------------ consensus_8701#0 AGCGCGCGCGTGGCGCGTCACCGCGGCGATGCCCAGGGACCGGGCCGGGTGCGTGGGGTT 240 consensus_8701#1 ------------------------------------------------------------ consensus_8701#0 CGTCGCGCACGGGGCGGGGGATGGGAGGGAGGATGAGTTCTGGGTGATGGGCGGGTACGA 300 consensus_8701#1 ------------------------------------------------------------ consensus_8701#0 CGGCTACACCACGGTGGGGGGAGTGGTGCCTAGTGACGTATACTGCCGGGACGCGGTGGC 360 consensus_8701#1 ------------------------------------------------------------ consensus_8701#0 GCTCGGGCTGTGGAGCGGCAAGTGGAGGGAGATTGGGGACATGTGGGAGGAATGGGAGAG 420 consensus_8701#1 ------------------------------------------------------------ consensus_8701#0 AGAGCGCCTTGGGCCGGTGGCTGTCATTTCTGCTGAAGATGGAAGGGTCACAGAGGTGTT 480 consensus_8701#1 ------------------------------------------------------------ consensus_8701#0 CATGCTCGATGGTCATGATATCTTCAGGTATAACTTCTCTTCGAACAGTTGGTCAAAGGA 540 consensus_8701#1 ------------------------------------------------------------ consensus_8701#0 AGCTACATTGAGGAGAAAGATCCCAAGTACTCAATCATGTGGTTTCATAGCAATGAATGG 600 consensus_8701#1 ------------------------------------------------------------ consensus_8701#0 CGAACTTTATGTTCTTACATCTGCAAAACTCCCTGTCGAAA--CCTCAAGTCCA--TGGA 656 consensus_8701#1 ---------------------------------TTCCGAAAACCCTCAAGTCCCACTGGA 27 * ***** ********** **** consensus_8701#0 AGCAG--TCGAAGAAGAGGTTGGCG--CTGGAGTTTC-AAGTTTACAACCC-TGCAGC-- 708 consensus_8701#1 AGCCAGTTCGAAGAAGAGGTTGGCCGCCTGGAGTTTCCAAGTTTACAACCCCTGCAGCCA 87 *** ***************** ********** ************* ****** consensus_8701#0 -AAAGATGT--GGAGGGTGCTCACCA--CAC-ATCCCCCTGTTAACGTACCAA--TTGAT 760 consensus_8701#1 CAAGATTGTTGGAGGGGTGCTCACCCACCACCATCCCCCTGTTAACGTACCCACATTGAT 147 ** *** * *********** *** ******************* * ***** consensus_8701#0 TTCAGGACTGCAGCTCTCTGTAC-GGTTGAGC-TGTAGGTTTCTTGATGATCACC-ATTC 817 consensus_8701#1 TTCAGGACTGCAGCTCTCTGTACCGGTTGAGCCTGTAGGTTTCTTGATGATCACCCATTC 207 *********************** ******** ********************** **** consensus_8701#0 AC-TGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCA-AATTTAGATGTAAATGAG 875 consensus_8701#1 ACCTGTACAGATTAAGGTAGTTGATCAGACATTTGATTGCACAATTTAGATGTAACTGAG 267 ** ************************************** ************* **** consensus_8701#0 AACACCATCCAATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCA 935 consensus_8701#1 AACNCCATCCCATGATGTCAGCAAATAGGCGAAGATTGTTGCGCTCGTGAGTGCTTTGCA 327 *** ****** ************************************************* consensus_8701#0 TTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGAC 995 consensus_8701#1 TTGGTAGCTTGTGTGTATATGTACAGGATGGGACATTGCACATTATCTAATAAAAAGGAC 387 ************************************************************ consensus_8701#0 ---------------- consensus_8701#1 GGTACATTGCAAAGAG 403 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||