These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 613 fasta sequence [AACTTTGTTCGGAGCAGATCACATCGCCCATCTCTCTTGCAAGCCGCCAGATCCGATCACATCGATCGCTCTCTCGGGCTTGATGGCCGGCGTCGAGGTTTCTGTTTCCGTCTCCCCTACCAAGAAGAGAAAAGGGGAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCCTCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGCCCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTTCGCTGGTGCCCTCGCCGGAGGAGGAGGAGGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCGCAACTGCTTAGGGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGGAGTACGTTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGTGTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGGATCATCCTTCCGACACCGACGATGATGACGACGAAGACTGGAAGCTTTTCATTAGCGCAATTAGGAGGACCTTCGTCTGAATCGAA] [+] EMBL OSS2593A [AACTTTGTTCGGAGCAGATCACATCGCCCATCTCTCTTGCAAGCCGCCAGATCCGATCACATCGATCGCTCTCTCGGGCTTGATGGCCGGCGTCGAGGTTTCTGTTTCCGTCTCCCCTACCAAGAAGAGAAAAGGGGAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCCTCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGCCCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTTCGCTGGTGCCCTCGCCGGAGGAGGAGGAGGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCGCAACTGCTTAGGGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGGAGTACGTTCGGAAAGGATTC ] [+] EMBL OSS2789A [AACTTTGTTCGGAGCAGATCACATCGCCCATCTCTCTTGCAAGCCGCCAGATCCGATCACATCGATCGCTCTCTCGGGCTTGATGGCCGGCGTCGAGGNTTCTGTTTCCGTCTCCCCTACCAAGAAGAGAAAAGGGGAGTNTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCCTCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGNCCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTT ] [+] EMBL AU101952 [ ATGCTTCTTTACGCGTGCGTCCGCAACTGC TA GGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGC GAGTACGCTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGTGTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGGATCATCCTTCCGACACCGACGATGATGACGACGAAGACTGGAAGCTTTTCATTAGCGCAATTAGGAGGACCTTCGTCTGAATCGAA] consensusID : consensus_8702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 591 fasta sequence [GCCCTGGACGGAGGAGAGGACGATGCCCTGGCTCATCCATCAAAGAAGAAGAAGATGTGGCTGCTGCCCAAGGAGGAGGTGGACTGGATCCTCGCTCAGTGCAACGAGCCCATCTGCGCCAGGTTCCGGGAGCTGAAGCGCGCCAACCCGTCGCTGGTGCCGTCGCCGGAGGAGAAGGACGAGTGCACCATGCTTCTCTACGAGTGCACCCGCGAATCCTACGAGGACGAGGCTAAGTACGCCAAGTTCCAGGACTGGGTTCGGGGCGAGTACGCTCGCAAAGGATTTGTGGAGGTGGACTATGACTATTTCGCCAAGAGGGAGGAGGCCATTTGGCTGAACGAGGAAGCACGGGAGGAGGTTTTGGGGCACTGGTCAGACCGTCATCATCCTTCCCACACCGACCTTGACGATGAAGATTGGAAGCTTGTAAGATCAATTCTAGAACGATTTGATCAACGGTCCGCAATTTCCCGATTCAACAGAAGGAACTAAGCTTTTGTAGTGAACAAATCAATTCACCTCTGTATGATTCACTTTGTGCTTCCATTCTCTCTCTGGCAGAGAAATTATTTTGAAGTGTCATATGTT] [+] EMBL CA766901 [GCCCTGGACGGAGGAGAGGACGATGCCCTGGCTCATCCATCAAAGAAGAAGAAGATGTGGCTGCTGCCCAAGGAGGAGGTGGACTGGATCCTCGCTCAGTGCAACGAGCCCATCTGCGCCAGGTTCCGGGAGCTGAAGCGCGCCAACCCGTCGCTGGTGCCGTCGCCGGAGGAGAAGGACGAGTGCACCATGCTTCTCTACGAGTGCACCCGCGAATCCTACGAGGACGAGGCTAAGTACGCCAAGTTCCAGGACTGGGTTCGGGGCGAGTACGCTCGCAAAGGATTTGTGGAGGTGGACTATGACTATTTCGCCAAGAGGGAGGAGGCCATTTGGCTGAACGAGGAAGCACGGGAGGAGGTTTTGGGGCACTGGTCAGACCGTCATCATCCTTCCCACACCGACCTTGACGATGAAGATTGGAAGCTTGTAAGATCAATTCTAGAACGATTTGATCAACGGTCCGCAATTTCCCGATTCAACAGAAGGAACTAAGCTTTTGTAGTGAACAAATCAATTCACCTCTGTATGATTCACTTTGTGCTTCCATTCTCTCTCTGGCAGAGAAATTATTTTGAAGTGTCATATGTT] [-] EMBL CF297083 [ TTCCCGATTCAACAGAAGGAACTAAGCATAAAAAGTGAACAAATCAATTCACCTCTGTATGATTCACTTTGTGCTTCCATTCTCTCTCTGGCAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8702#0 AACTTTGTTCGGAGCAGATCACATCGCCCATCTCTCTTGCAAGCCGCCAGATCCGATCAC 60 consensus_8702#1 ------------------------------------------------------------ consensus_8702#0 ATCGATCGCTCTCTCGGGCTTGATGGCCGGCGTCGAGGTTTCTGTTTCCGTCTCCCCTAC 120 consensus_8702#1 ------------------------------------------------------------ consensus_8702#0 CAAGAAGAGAAAAGGGGAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCC 180 consensus_8702#1 -------------------------GCCCTGGACGGAGGAGAGGACGATGCCCTGGCTCA 35 ************************** ** **** consensus_8702#0 TCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCAGGAGGAGGTGGACTGGATCCTCGC 240 consensus_8702#1 TCCATCAAAGAAGAAGAAGATGTGGCTGCTGCCCAAGGAGGAGGTGGACTGGATCCTCGC 95 **** **************************** ************************* consensus_8702#0 CCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTTCGCT 300 consensus_8702#1 TCAGTGCAACGAGCCCATCTGCGCCAGGTTCCGGGAGCTGAAGCGCGCCAACCCGTCGCT 155 **** ********* ** * ** *************************** ***** consensus_8702#0 GGTGCCCTCGCCGGAGGAGGAGGAGGACGAGTCCACCATGCTTCTTTACGCGTGCGTCCG 360 consensus_8702#1 GGTGCCGTCGCCGGAGGAGAAG---GACGAGTGCACCATGCTTCTCTACGAGTGCACCCG 212 ****** ************ ** ******* ************ **** **** *** consensus_8702#0 CAACTGCTTAGGGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGGA 420 consensus_8702#1 CGAATCCT--ACGAGGACGAGGCTAAGTACGCCAAGTTCCAGGACTGGGTTCGGGGCG-A 269 * * * ** ***** ***** **** ************** ******** **** * consensus_8702#0 GTACGTTCGGAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGCGAGAGGGCGGAGGT 480 consensus_8702#1 GTACGCTCGCAAAGGATTTGTGGAGGTGGACTATGACTATTTCGCCAAGAGGGAGGAGGC 329 ***** *** ******** ************** ***** **** * ****** ***** consensus_8702#0 GTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGG---------ATCA 531 consensus_8702#1 CATTTGGCTGAACGAGGAAGCACGGGAGGAGGTTTTGGGGCACTGGTCAGACCGTCATCA 389 * ********** ** ************** **** ****** **** consensus_8702#0 TCCTTCCGACACCGAC---GATGATGACGAC--GAAGACTGGAAGCTTTTCATTAGCGCA 586 consensus_8702#1 TCCTTCCCACACCGACCTTGACGATGAAGATTGGAAGCTTGTAAGATCAATTCTAGAACG 449 ******* ******** ** ***** ** **** ** *** * *** * consensus_8702#0 ATTAGGAGGACCTTCGTCTGAATCGAA--------------------------------- 613 consensus_8702#1 ATTTGATCAACGGTCCGCAATTTCCCGATTCAACAGAAGGAACTAAGCTTTTGTAGTGAA 509 *** * ** ** * ** consensus_8702#0 ------------------------------------------------------------ consensus_8702#1 CAAATCAATTCACCTCTGTATGATTCACTTTGTGCTTCCATTCTCTCTCTGGCAGAGAAA 569 consensus_8702#0 ---------------------- consensus_8702#1 TTATTTTGAAGTGTCATATGTT 591 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||